homedir = os.getcwd()
tool_title = widgets.Label(r'\(\textbf{pc4cancerimmune}\)')
if nanoHUB_flag or hublib_flag:
# define this, but don't use (yet)
remote_cb = widgets.Checkbox(
indent=False,
value=False,
description='Submit as Batch Job to Clusters/Grid')
top_row = widgets.HBox(children=[read_config, tool_title])
gui = widgets.VBox(children=[top_row, tabs, run_button.w])
else: # missing hublib (e.g. Windows desktop)
gui_height = '900px'
gui_layout = widgets.Layout(
width='auto',
height=gui_height,
overflow_y='scroll',
)
top_row = widgets.HBox(children=[tool_title])
gui = widgets.VBox(children=[top_row, tabs, run_button], layout=gui_layout)
fill_gui_params(read_config.options['DEFAULT'])
# pass in (relative) directory where output data is located
output_dir = "tmpdir"
svg.update(output_dir)
sub.update_dropdown_fields("data")
sub.update(output_dir)
# s.run(run_name, "--local ../bin/pc-nb config.xml")
# os.system("../cancer_biorobots ../config/PhysiCell_settings.xml &")
# cmd_str = "./myproj " + full_xml_filename + " &"
# os.system(cmd_str)
run_button = widgets.Button(
# description='Run',
description='Write',
button_style='success', # 'success', 'info', 'warning', 'danger' or ''
tooltip='Run simulation',
)
run_button.on_click(run_button_cb)
#titles = ['Basics', 'Substrates', 'Custom', 'Cell Plots', 'Substrate Plots']
titles = ['Basics', 'User Params', 'Cell Plots', 'Substrate Plots']
#tabs = widgets.Tab(children=[config_tab.tab, cells.tab, custom.tab, svg.tab, sub.tab],
tabs = widgets.Tab(children=[config_tab.tab, user_tab.tab, svg.tab, sub.tab],
_titles={i: t
for i, t in enumerate(titles)},
layout=tab_layout)
#gui = widgets.VBox(children=[read_config, tabs, write_config_row, run_button.w])
gui = widgets.VBox(children=[tabs, run_button])
#fill_gui_params(read_config.options['DEFAULT'])
#fill_gui_params("../config/PhysiCell_settings.xml")
fill_gui_params(full_xml_filename)
#svg.update(read_config.value)
svg.update("output")
sub.update("output")