def parse_gctx(infile):
fid = File(infile, 'r')
mat = fid.getNode('/0/DATA/0', 'matrix').read()
rid = fid.getNode('/0/META/ROW', 'id').read()
cid = fid.getNode('/0/META/COL', 'id').read()
fid.close()
return {'matrix': mat, 'rid': rid, 'cid': cid}
def upload_file():
"""Upload a file to the database"""
if not current_user.is_authenticated:
flash("You need to log in or sign up before uploading file.")
return redirect(url_for("login"))
form = UploadFileForm()
if form.validate_on_submit():
pic = form.file.data
filename = generate_filename(File, pic.filename)
mimetype = pic.mimetype
file = File(filename=filename, file=pic.read(), mimetype=mimetype, file_owner=current_user)
db.session.add(file)
db.session.commit()
return redirect(url_for("get_files"))
return render_template("upload-img.html", form=form, logged_in=True, file=True)