def projecttest_context(set_up_project_stage='init'):
"""
Context manager used within TargetExplorer testing framework.
Uses the SetUpSampleProject class to set up a TargetExplorer database at various points of
completion, within a temporary directory set up by the nose plugin `setup_tmp_db_plugin`.
The following command will set up the database at the point after retrieval of UniProt data:
>>> with projecttest_context(set_up_project_stage='uniprot'):
>>> ...
See docs for SetUpSampleProject for other stages which can be set up.
"""
# Set up
with open(installation_testdir_filepath) as installation_testdir_file:
temp_dir = installation_testdir_file.read()
cwd = os.getcwd()
os.chdir(temp_dir)
set_up_sample_project(stage=set_up_project_stage)
# Test is run at this point
yield temp_dir
# Tear down
db.drop_all()
db.create_all()
os.chdir(cwd)
def projecttest_context(set_up_project_stage='init'):
"""
Context manager used within TargetExplorer testing framework.
Uses the SetUpSampleProject class to set up a TargetExplorer database at various points of
completion, within a temporary directory set up by the nose plugin `setup_tmp_db_plugin`.
The following command will set up the database at the point after retrieval of UniProt data:
>>> with projecttest_context(set_up_project_stage='uniprot'):
>>> ...
See docs for SetUpSampleProject for other stages which can be set up.
"""
# Set up
with open(installation_testdir_filepath) as installation_testdir_file:
temp_dir = installation_testdir_file.read()
cwd = os.getcwd()
os.chdir(temp_dir)
set_up_sample_project(stage=set_up_project_stage)
# Test is run at this point
yield temp_dir
# Tear down
db.drop_all()
db.create_all()
os.chdir(cwd)
def create_db(self):
from targetexplorer.flaskapp import db, app
app.config.update(SQLALCHEMY_DATABASE_URI=self.sqlalchemy_database_uri)
db.create_all()
def create_db(self):
from targetexplorer.flaskapp import db, app
app.config.update(
SQLALCHEMY_DATABASE_URI=self.sqlalchemy_database_uri
)
db.create_all()
