def defineEvgen16Job(self, i):
        """Define an Evgen16 job based on predefined values and randomly generated names
        """

        job = JobSpec()
        job.computingSite = self.__site
        job.cloud = self.__cloud

        job.jobDefinitionID = int(time.time()) % 10000
        job.jobName = "%s_%d" % (uuid.uuid1(), i)
        job.AtlasRelease = 'Atlas-16.6.2'
        job.homepackage = 'AtlasProduction/16.6.2.1'
        job.transformation = 'Evgen_trf.py'
        job.destinationDBlock = self.__datasetName
        job.destinationSE = self.__destName
        job.currentPriority = 10000
        job.prodSourceLabel = 'test'
        job.cmtConfig = 'i686-slc5-gcc43-opt'

        #Output file
        fileO = FileSpec()
        fileO.lfn = "%s.evgen.pool.root" % job.jobName
        fileO.destinationDBlock = job.destinationDBlock
        fileO.destinationSE = job.destinationSE
        fileO.dataset = job.destinationDBlock
        fileO.destinationDBlockToken = 'ATLASDATADISK'
        fileO.type = 'output'
        job.addFile(fileO)

        #Log file
        fileL = FileSpec()
        fileL.lfn = "%s.job.log.tgz" % job.jobName
        fileL.destinationDBlock = job.destinationDBlock
        fileL.destinationSE = job.destinationSE
        fileL.dataset = job.destinationDBlock
        fileL.destinationDBlockToken = 'ATLASDATADISK'
        fileL.type = 'log'
        job.addFile(fileL)

        job.jobParameters = "2760 105048 19901 101 200 MC10.105048.PythiaB_ccmu3mu1X.py %s NONE NONE NONE MC10JobOpts-latest-test.tar.gz" % fileO.lfn
        return job
    def defineEvgen16Job(self, i):
        """Define an Evgen16 job based on predefined values and randomly generated names
        """

        job = JobSpec()
        job.computingSite = self.__site
        job.cloud = self.__cloud

        job.jobDefinitionID = int(time.time()) % 10000
        job.jobName = "%s_%d" % (uuid.uuid1(), i)
        job.AtlasRelease = 'Atlas-16.6.2'
        job.homepackage = 'AtlasProduction/16.6.2.1'
        job.transformation = 'Evgen_trf.py'
        job.destinationDBlock = self.__datasetName
        job.destinationSE = self.__destName
        job.currentPriority = 10000
        job.prodSourceLabel = 'test'
        job.cmtConfig = 'i686-slc5-gcc43-opt'

        #Output file
        fileO = FileSpec()
        fileO.lfn = "%s.evgen.pool.root" % job.jobName
        fileO.destinationDBlock = job.destinationDBlock
        fileO.destinationSE = job.destinationSE
        fileO.dataset = job.destinationDBlock
        fileO.destinationDBlockToken = 'ATLASDATADISK'
        fileO.type = 'output'
        job.addFile(fileO)

        #Log file
        fileL = FileSpec()
        fileL.lfn = "%s.job.log.tgz" % job.jobName
        fileL.destinationDBlock = job.destinationDBlock
        fileL.destinationSE = job.destinationSE
        fileL.dataset = job.destinationDBlock
        fileL.destinationDBlockToken = 'ATLASDATADISK'
        fileL.type = 'log'
        job.addFile(fileL)

        job.jobParameters = "2760 105048 19901 101 200 MC10.105048.PythiaB_ccmu3mu1X.py %s NONE NONE NONE MC10JobOpts-latest-test.tar.gz" % fileO.lfn
        return job
Exemplo n.º 3
0
    def run(self, data):
        datasetName = 'panda:panda.destDB.%s' % commands.getoutput('uuidgen')
        destName = 'ANALY_RRC-KI-HPC'
        site = 'ANALY_RRC-KI-HPC'
        scope = config['DEFAULT_SCOPE']

        distributive = data['distributive']
        release = data['release']
        parameters = data['parameters']
        input_type = data['input_type']
        input_params = data['input_params']
        input_files = data['input_files']
        output_type = data['output_type']
        output_params = data['output_params']
        output_files = data['output_files']

        jobid = data['jobid']
        _logger.debug('Jobid: ' + str(jobid))

        job = JobSpec()
        job.jobDefinitionID = int(time.time()) % 10000
        job.jobName = commands.getoutput('uuidgen')
        job.transformation = config['DEFAULT_TRF']
        job.destinationDBlock = datasetName
        job.destinationSE = destName
        job.currentPriority = 1000
        job.prodSourceLabel = 'user'
        job.computingSite = site
        job.cloud = 'RU'
        job.prodDBlock = "%s:%s.%s" % (scope, scope, job.jobName)

        job.jobParameters = '%s %s "%s"' % (release, distributive, parameters)

        params = {}
        _logger.debug('MoveData')
        ec = 0
        ec, uploaded_input_files = movedata(
            params=params,
            fileList=input_files,
            fromType=input_type,
            fromParams=input_params,
            toType='hpc',
            toParams={'dest': '/' + re.sub(':', '/', job.prodDBlock)})
        if ec != 0:
            _logger.error('Move data error: ' + ec[1])
            return

        for file in uploaded_input_files:
            fileIT = FileSpec()
            fileIT.lfn = file
            fileIT.dataset = job.prodDBlock
            fileIT.prodDBlock = job.prodDBlock
            fileIT.type = 'input'
            fileIT.scope = scope
            fileIT.status = 'ready'
            fileIT.GUID = commands.getoutput('uuidgen')
            job.addFile(fileIT)

        for file in output_files:
            fileOT = FileSpec()
            fileOT.lfn = file
            fileOT.destinationDBlock = job.prodDBlock
            fileOT.destinationSE = job.destinationSE
            fileOT.dataset = job.prodDBlock
            fileOT.type = 'output'
            fileOT.scope = scope
            fileOT.GUID = commands.getoutput('uuidgen')
            job.addFile(fileOT)

        fileOL = FileSpec()
        fileOL.lfn = "%s.log.tgz" % job.jobName
        fileOL.destinationDBlock = job.destinationDBlock
        fileOL.destinationSE = job.destinationSE
        fileOL.dataset = job.destinationDBlock
        fileOL.type = 'log'
        fileOL.scope = 'panda'
        job.addFile(fileOL)

        self.jobList.append(job)

        #submitJob
        o = self.submitJobs(self.jobList)
        x = o[0]

        #update PandaID
        conn = MySQLdb.connect(
            host=self.dbhost,
            db=self.dbname,
            #                                        port=self.dbport, connect_timeout=self.dbtimeout,
            user=self.dbuser,
            passwd=self.dbpasswd)
        cur = conn.cursor()
        try:
            varDict = {}
            PandaID = int(x[0])
            varDict['id'] = jobid
            varDict['pandaId'] = PandaID

            sql = "UPDATE %s SET %s.pandaId=%s WHERE %s.id=%s" % (
                self.table_jobs, self.table_jobs, varDict['pandaId'],
                self.table_jobs, varDict['id'])
            cur.execute(sql, varDict)

        except:
            _logger.error('SENDJOB: Incorrect server response')
        try:
            conn.commit()
            return True
        except:
            _logger.error("commit error")
            return False
Exemplo n.º 4
0
    def master_prepare(self, app, appconfig):
        '''Prepare the master job'''

        from pandatools import Client
        from taskbuffer.JobSpec import JobSpec
        from taskbuffer.FileSpec import FileSpec

        job = app._getParent()
        logger.debug('ExecutablePandaRTHandler master_prepare called for %s',
                     job.getFQID('.'))

        # set chirp variables
        if configPanda['chirpconfig'] or configPanda['chirpserver']:
            setChirpVariables()

#       Pack inputsandbox
        inputsandbox = 'sources.%s.tar' % commands.getoutput(
            'uuidgen 2> /dev/null')
        inpw = job.getInputWorkspace()
        # add user script to inputsandbox
        if hasattr(job.application.exe, "name"):
            if not job.application.exe in job.inputsandbox:
                job.inputsandbox.append(job.application.exe)

        for fname in [f.name for f in job.inputsandbox]:
            fname.rstrip(os.sep)
            path = fname[:fname.rfind(os.sep)]
            f = fname[fname.rfind(os.sep) + 1:]
            rc, output = commands.getstatusoutput(
                'tar rf %s -C %s %s' % (inpw.getPath(inputsandbox), path, f))
            if rc:
                logger.error('Packing inputsandbox failed with status %d', rc)
                logger.error(output)
                raise ApplicationConfigurationError(
                    None, 'Packing inputsandbox failed.')
        if len(job.inputsandbox) > 0:
            rc, output = commands.getstatusoutput('gzip %s' %
                                                  (inpw.getPath(inputsandbox)))
            if rc:
                logger.error('Packing inputsandbox failed with status %d', rc)
                logger.error(output)
                raise ApplicationConfigurationError(
                    None, 'Packing inputsandbox failed.')
            inputsandbox += ".gz"
        else:
            inputsandbox = None

#       Upload Inputsandbox
        if inputsandbox:
            logger.debug('Uploading source tarball ...')
            uploadSources(inpw.getPath(), os.path.basename(inputsandbox))
            self.inputsandbox = inputsandbox
        else:
            self.inputsandbox = None

#       input dataset
        if job.inputdata:
            if job.inputdata._name != 'DQ2Dataset':
                raise ApplicationConfigurationError(
                    None, 'PANDA application supports only DQ2Datasets')

        # run brokerage here if not splitting
        if not job.splitter:
            from GangaPanda.Lib.Panda.Panda import runPandaBrokerage
            runPandaBrokerage(job)
        elif job.splitter._name not in [
                'DQ2JobSplitter', 'ArgSplitter', 'ArgSplitterTask'
        ]:
            raise ApplicationConfigurationError(
                None, 'Panda splitter must be DQ2JobSplitter or ArgSplitter')

        if job.backend.site == 'AUTO':
            raise ApplicationConfigurationError(
                None, 'site is still AUTO after brokerage!')

#       output dataset
        if job.outputdata:
            if job.outputdata._name != 'DQ2OutputDataset':
                raise ApplicationConfigurationError(
                    None, 'Panda backend supports only DQ2OutputDataset')
        else:
            logger.info('Adding missing DQ2OutputDataset')
            job.outputdata = DQ2OutputDataset()

        job.outputdata.datasetname, outlfn = dq2outputdatasetname(
            job.outputdata.datasetname, job.id, job.outputdata.isGroupDS,
            job.outputdata.groupname)

        self.outDsLocation = Client.PandaSites[job.backend.site]['ddm']

        try:
            Client.addDataset(job.outputdata.datasetname,
                              False,
                              location=self.outDsLocation)
            logger.info('Output dataset %s registered at %s' %
                        (job.outputdata.datasetname, self.outDsLocation))
            dq2_set_dataset_lifetime(job.outputdata.datasetname,
                                     location=self.outDsLocation)
        except exceptions.SystemExit:
            raise BackendError(
                'Panda', 'Exception in Client.addDataset %s: %s %s' %
                (job.outputdata.datasetname, sys.exc_info()[0],
                 sys.exc_info()[1]))

        # handle the libds
        if job.backend.libds:
            self.libDataset = job.backend.libds
            self.fileBO = getLibFileSpecFromLibDS(self.libDataset)
            self.library = self.fileBO.lfn
        elif job.backend.bexec:
            self.libDataset = job.outputdata.datasetname + '.lib'
            self.library = '%s.tgz' % self.libDataset
            try:
                Client.addDataset(self.libDataset,
                                  False,
                                  location=self.outDsLocation)
                dq2_set_dataset_lifetime(self.libDataset,
                                         location=self.outDsLocation)
                logger.info('Lib dataset %s registered at %s' %
                            (self.libDataset, self.outDsLocation))
            except exceptions.SystemExit:
                raise BackendError(
                    'Panda', 'Exception in Client.addDataset %s: %s %s' %
                    (self.libDataset, sys.exc_info()[0], sys.exc_info()[1]))

        # collect extOutFiles
        self.extOutFile = []
        for tmpName in job.outputdata.outputdata:
            if tmpName != '':
                self.extOutFile.append(tmpName)

        for tmpName in job.outputsandbox:
            if tmpName != '':
                self.extOutFile.append(tmpName)

        for tmpName in job.backend.extOutFile:
            if tmpName != '':
                self.extOutFile.append(tmpName)

        # create build job
        if job.backend.bexec != '':
            jspec = JobSpec()
            jspec.jobDefinitionID = job.id
            jspec.jobName = commands.getoutput('uuidgen 2> /dev/null')
            jspec.transformation = '%s/buildGen-00-00-01' % Client.baseURLSUB
            if Client.isDQ2free(job.backend.site):
                jspec.destinationDBlock = '%s/%s' % (
                    job.outputdata.datasetname, self.libDataset)
                jspec.destinationSE = 'local'
            else:
                jspec.destinationDBlock = self.libDataset
                jspec.destinationSE = job.backend.site
            jspec.prodSourceLabel = configPanda['prodSourceLabelBuild']
            jspec.processingType = configPanda['processingType']
            jspec.assignedPriority = configPanda['assignedPriorityBuild']
            jspec.computingSite = job.backend.site
            jspec.cloud = job.backend.requirements.cloud
            jspec.jobParameters = '-o %s' % (self.library)
            if self.inputsandbox:
                jspec.jobParameters += ' -i %s' % (self.inputsandbox)
            else:
                raise ApplicationConfigurationError(
                    None,
                    'Executable on Panda with build job defined, but inputsandbox is emtpy !'
                )
            matchURL = re.search('(http.*://[^/]+)/', Client.baseURLCSRVSSL)
            if matchURL:
                jspec.jobParameters += ' --sourceURL %s ' % matchURL.group(1)
            if job.backend.bexec != '':
                jspec.jobParameters += ' --bexec "%s" ' % urllib.quote(
                    job.backend.bexec)
                jspec.jobParameters += ' -r %s ' % '.'

            fout = FileSpec()
            fout.lfn = self.library
            fout.type = 'output'
            fout.dataset = self.libDataset
            fout.destinationDBlock = self.libDataset
            jspec.addFile(fout)

            flog = FileSpec()
            flog.lfn = '%s.log.tgz' % self.libDataset
            flog.type = 'log'
            flog.dataset = self.libDataset
            flog.destinationDBlock = self.libDataset
            jspec.addFile(flog)
            return jspec
        else:
            return None
Exemplo n.º 5
0
    def prepare(self, app, appsubconfig, appmasterconfig, jobmasterconfig):
        '''prepare the subjob specific configuration'''

        from pandatools import Client
        from taskbuffer.JobSpec import JobSpec
        from taskbuffer.FileSpec import FileSpec

        job = app._getParent()
        logger.debug('AthenaPandaRTHandler prepare called for %s',
                     job.getFQID('.'))

        #       in case of a simple job get the dataset content, otherwise subjobs are filled by the splitter
        if job.inputdata and not job._getRoot().subjobs:

            if not job.inputdata.names:

                contents = job.inputdata.get_contents(overlap=False, size=True)

                for ds in contents.keys():

                    for f in contents[ds]:
                        job.inputdata.guids.append(f[0])
                        job.inputdata.names.append(f[1][0])
                        job.inputdata.sizes.append(f[1][1])
                        job.inputdata.checksums.append(f[1][2])
                        job.inputdata.scopes.append(f[1][3])

        site = job._getRoot().backend.site
        job.backend.site = site
        job.backend.actualCE = site
        cloud = job._getRoot().backend.requirements.cloud
        job.backend.requirements.cloud = cloud

        #       if no outputdata are given
        if not job.outputdata:
            job.outputdata = DQ2OutputDataset()
            job.outputdata.datasetname = job._getRoot().outputdata.datasetname
        #if not job.outputdata.datasetname:
        else:
            job.outputdata.datasetname = job._getRoot().outputdata.datasetname

        if not job.outputdata.datasetname:
            raise ApplicationConfigurationError(
                None, 'DQ2OutputDataset has no datasetname')

        jspec = JobSpec()
        jspec.jobDefinitionID = job._getRoot().id
        jspec.jobName = commands.getoutput('uuidgen 2> /dev/null')
        jspec.transformation = '%s/runGen-00-00-02' % Client.baseURLSUB
        if job.inputdata:
            jspec.prodDBlock = job.inputdata.dataset[0]
        else:
            jspec.prodDBlock = 'NULL'
        jspec.destinationDBlock = job.outputdata.datasetname
        if job.outputdata.location:
            if not job._getRoot().subjobs or job.id == 0:
                logger.warning(
                    'You have specified outputdata.location. Note that Panda may not support writing to a user-defined output location.'
                )
            jspec.destinationSE = job.outputdata.location
        else:
            jspec.destinationSE = site
        jspec.prodSourceLabel = configPanda['prodSourceLabelRun']
        jspec.processingType = configPanda['processingType']
        jspec.assignedPriority = configPanda['assignedPriorityRun']
        jspec.cloud = cloud
        # memory
        if job.backend.requirements.memory != -1:
            jspec.minRamCount = job.backend.requirements.memory
        # cputime
        if job.backend.requirements.cputime != -1:
            jspec.maxCpuCount = job.backend.requirements.cputime
        jspec.computingSite = site

        #       library (source files)
        if job.backend.libds:
            flib = FileSpec()
            flib.lfn = self.fileBO.lfn
            flib.GUID = self.fileBO.GUID
            flib.type = 'input'
            flib.status = self.fileBO.status
            flib.dataset = self.fileBO.destinationDBlock
            flib.dispatchDBlock = self.fileBO.destinationDBlock
            jspec.addFile(flib)
        elif job.backend.bexec:
            flib = FileSpec()
            flib.lfn = self.library
            flib.type = 'input'
            flib.dataset = self.libDataset
            flib.dispatchDBlock = self.libDataset
            jspec.addFile(flib)

#       input files FIXME: many more input types
        if job.inputdata:
            for guid, lfn, size, checksum, scope in zip(
                    job.inputdata.guids, job.inputdata.names,
                    job.inputdata.sizes, job.inputdata.checksums,
                    job.inputdata.scopes):
                finp = FileSpec()
                finp.lfn = lfn
                finp.GUID = guid
                finp.scope = scope

                #            finp.fsize =
                #            finp.md5sum =
                finp.dataset = job.inputdata.dataset[0]
                finp.prodDBlock = job.inputdata.dataset[0]
                finp.dispatchDBlock = job.inputdata.dataset[0]
                finp.type = 'input'
                finp.status = 'ready'
                jspec.addFile(finp)


#       output files
#        outMap = {}

#FIXME: if options.outMeta != []:
        self.rundirectory = "."

        #       log files

        flog = FileSpec()
        flog.lfn = '%s._$PANDAID.log.tgz' % job.outputdata.datasetname
        flog.type = 'log'
        flog.dataset = job.outputdata.datasetname
        flog.destinationDBlock = job.outputdata.datasetname
        flog.destinationSE = job.backend.site
        jspec.addFile(flog)

        #       job parameters
        param = ''

        # source URL
        matchURL = re.search("(http.*://[^/]+)/", Client.baseURLCSRVSSL)
        srcURL = ""
        if matchURL != None:
            srcURL = matchURL.group(1)
            param += " --sourceURL %s " % srcURL

        param += '-r "%s" ' % self.rundirectory

        exe_name = job.application.exe
        if job.backend.bexec == '':
            if hasattr(job.application.exe, "name"):
                exe_name = os.path.basename(job.application.exe.name)

            # set jobO parameter
            if job.application.args:
                param += ' -j "" -p "%s %s" ' % (
                    exe_name, urllib.quote(" ".join(job.application.args)))
            else:
                param += ' -j "" -p "%s" ' % exe_name
            if self.inputsandbox:
                param += ' -a %s ' % self.inputsandbox

        else:
            param += '-l %s ' % self.library
            param += '-j "" -p "%s %s" ' % (
                exe_name, urllib.quote(" ".join(job.application.args)))

        if job.inputdata:
            param += '-i "%s" ' % job.inputdata.names

        # fill outfiles
        outfiles = {}
        for f in self.extOutFile:
            tarnum = 1
            if f.find('*') != -1:
                # archive *
                outfiles[f] = "outputbox%i.%s.%s.tar.gz" % (
                    tarnum, job.getFQID('.'), time.strftime("%Y%m%d%H%M%S"))
                tarnum += 1
            else:
                outfiles[f] = "%s.%s.%s" % (f, job.getFQID('.'),
                                            time.strftime("%Y%m%d%H%M%S"))

            fout = FileSpec()
            fout.lfn = outfiles[f]
            fout.type = 'output'
            fout.dataset = job.outputdata.datasetname
            fout.destinationDBlock = job.outputdata.datasetname
            fout.destinationSE = job.backend.site
            jspec.addFile(fout)

        param += '-o "%s" ' % (
            outfiles
        )  # must be double quotes, because python prints strings in 'single quotes'

        for file in jspec.Files:
            if file.type in ['output', 'log'] and configPanda['chirpconfig']:
                file.dispatchDBlockToken = configPanda['chirpconfig']
                logger.debug('chirp file %s', file)

        jspec.jobParameters = param

        return jspec
Exemplo n.º 6
0
    def master_prepare(self, app, appmasterconfig):

        # PandaTools
        from pandatools import Client
        from pandatools import AthenaUtils
        from taskbuffer.JobSpec import JobSpec
        from taskbuffer.FileSpec import FileSpec

        job = app._getParent()
        logger.debug('AthenaMCPandaRTHandler master_prepare called for %s',
                     job.getFQID('.'))
        usertag = configDQ2['usertag']
        #usertag='user09'
        nickname = getNickname(allowMissingNickname=True)
        self.libDataset = '%s.%s.ganga.%s_%d.lib._%06d' % (
            usertag, nickname, commands.getoutput('hostname').split('.')[0],
            int(time.time()), job.id)
        #        self.userprefix='%s.%s.ganga' % (usertag,gridProxy.identity())
        sources = 'sources.%s.tar.gz' % commands.getoutput(
            'uuidgen 2> /dev/null')
        self.library = '%s.lib.tgz' % self.libDataset

        # check DBRelease
        # if job.backend.dbRelease != '' and job.backend.dbRelease.find(':') == -1:
        #   raise ApplicationConfigurationError(None,"ERROR : invalid argument for backend.dbRelease. Must be 'DatasetName:FileName'")

        #       unpack library
        logger.debug('Creating source tarball ...')
        tmpdir = '/tmp/%s' % commands.getoutput('uuidgen 2> /dev/null')
        os.mkdir(tmpdir)

        inputbox = []
        if os.path.exists(app.transform_archive):
            # must add a condition on size.
            inputbox += [File(app.transform_archive)]
        if app.evgen_job_option:
            self.evgen_job_option = app.evgen_job_option
            if os.path.exists(app.evgen_job_option):
                # locally modified job option file to add to the input sand box
                inputbox += [File(app.evgen_job_option)]
                self.evgen_job_option = app.evgen_job_option.split("/")[-1]

#       add input sandbox files
        if (job.inputsandbox):
            for file in job.inputsandbox:
                inputbox += [file]
#        add option files
        for extFile in job.backend.extOutFile:
            try:
                shutil.copy(extFile, tmpdir)
            except IOError:
                os.makedirs(tmpdir)
                shutil.copy(extFile, tmpdir)
#       fill the archive
        for opt_file in inputbox:
            try:
                shutil.copy(opt_file.name, tmpdir)
            except IOError:
                os.makedirs(tmpdir)
                shutil.copy(opt_file.name, tmpdir)
#       now tar it up again

        inpw = job.getInputWorkspace()
        rc, output = commands.getstatusoutput('tar czf %s -C %s .' %
                                              (inpw.getPath(sources), tmpdir))
        if rc:
            logger.error('Packing sources failed with status %d', rc)
            logger.error(output)
            raise ApplicationConfigurationError(None,
                                                'Packing sources failed.')

        shutil.rmtree(tmpdir)

        #       upload sources

        logger.debug('Uploading source tarball ...')
        try:
            cwd = os.getcwd()
            os.chdir(inpw.getPath())
            rc, output = Client.putFile(sources)
            if output != 'True':
                logger.error('Uploading sources %s failed. Status = %d',
                             sources, rc)
                logger.error(output)
                raise ApplicationConfigurationError(
                    None, 'Uploading archive failed')
        finally:
            os.chdir(cwd)

        # Use Panda's brokerage
##         if job.inputdata and len(app.sites)>0:
##             # update cloud, use inputdata's
##             from dq2.info.TiersOfATLAS import whichCloud,ToACache
##             inclouds=[]
##             for site in app.sites:
##                 cloudSite=whichCloud(app.sites[0])
##                 if cloudSite not in inclouds:
##                     inclouds.append(cloudSite)
##             # now converting inclouds content into proper brokering stuff.
##             outclouds=[]
##             for cloudSite in inclouds:
##                 for cloudID, eachCloud in ToACache.dbcloud.iteritems():
##                     if cloudSite==eachCloud:
##                         cloud=cloudID
##                         outclouds.append(cloud)
##                         break

##             print outclouds
##             # finally, matching with user's wishes
##             if len(outclouds)>0:
##                 if not job.backend.requirements.cloud: # no user wish, update
##                     job.backend.requirements.cloud=outclouds[0]
##                 else:
##                     try:
##                         assert job.backend.requirements.cloud in outclouds
##                     except:
##                         raise ApplicationConfigurationError(None,'Input dataset not available in target cloud %s. Please try any of the following %s' % (job.backend.requirements.cloud, str(outclouds)))

        from GangaPanda.Lib.Panda.Panda import runPandaBrokerage

        runPandaBrokerage(job)

        if job.backend.site == 'AUTO':
            raise ApplicationConfigurationError(
                None, 'site is still AUTO after brokerage!')

        # output dataset preparation and registration
        try:
            outDsLocation = Client.PandaSites[job.backend.site]['ddm']
        except:
            raise ApplicationConfigurationError(
                None,
                "Could not extract output dataset location from job.backend.site value: %s. Aborting"
                % job.backend.site)
        if not app.dryrun:
            for outtype in app.outputpaths.keys():
                dset = string.replace(app.outputpaths[outtype], "/", ".")
                dset = dset[1:]
                # dataset registration must be done only once.
                print "registering output dataset %s at %s" % (dset,
                                                               outDsLocation)
                try:
                    Client.addDataset(dset, False, location=outDsLocation)
                    dq2_set_dataset_lifetime(dset, location=outDsLocation)
                except:
                    raise ApplicationConfigurationError(
                        None,
                        "Fail to create output dataset %s. Aborting" % dset)
            # extend registration to build job lib dataset:
            print "registering output dataset %s at %s" % (self.libDataset,
                                                           outDsLocation)

            try:
                Client.addDataset(self.libDataset,
                                  False,
                                  location=outDsLocation)
                dq2_set_dataset_lifetime(self.libDataset, outDsLocation)
            except:
                raise ApplicationConfigurationError(
                    None, "Fail to create output dataset %s. Aborting" %
                    self.libDataset)

        ###
        cacheVer = "-AtlasProduction_" + str(app.prod_release)

        logger.debug("master job submit?")
        self.outsite = job.backend.site
        if app.se_name and app.se_name != "none" and not self.outsite:
            self.outsite = app.se_name

        #       create build job
        jspec = JobSpec()
        jspec.jobDefinitionID = job.id
        jspec.jobName = commands.getoutput('uuidgen 2> /dev/null')
        jspec.AtlasRelease = 'Atlas-%s' % app.atlas_rel
        jspec.homepackage = 'AnalysisTransforms' + cacheVer  #+nightVer
        jspec.transformation = '%s/buildJob-00-00-03' % Client.baseURLSUB  # common base to Athena and AthenaMC jobs: buildJob is a pilot job which takes care of all inputs for the real jobs (in prepare()
        jspec.destinationDBlock = self.libDataset
        jspec.destinationSE = job.backend.site
        jspec.prodSourceLabel = 'panda'
        jspec.assignedPriority = 2000
        jspec.computingSite = job.backend.site
        jspec.cloud = job.backend.requirements.cloud
        #        jspec.jobParameters     = self.args not known yet
        jspec.jobParameters = '-o %s' % (self.library)
        if app.userarea:
            print app.userarea
            jspec.jobParameters += ' -i %s' % (os.path.basename(app.userarea))
        else:
            jspec.jobParameters += ' -i %s' % (sources)
        jspec.cmtConfig = AthenaUtils.getCmtConfig(athenaVer=app.atlas_rel)

        matchURL = re.search('(http.*://[^/]+)/', Client.baseURLSSL)
        if matchURL:
            jspec.jobParameters += ' --sourceURL %s' % matchURL.group(1)

        fout = FileSpec()
        fout.lfn = self.library
        fout.type = 'output'
        fout.dataset = self.libDataset
        fout.destinationDBlock = self.libDataset
        jspec.addFile(fout)

        flog = FileSpec()
        flog.lfn = '%s.log.tgz' % self.libDataset
        flog.type = 'log'
        flog.dataset = self.libDataset
        flog.destinationDBlock = self.libDataset
        jspec.addFile(flog)
        #print "MASTER JOB DETAILS:",jspec.jobParameters

        return jspec
Exemplo n.º 7
0
    def master_prepare(self,app,appconfig):
        '''Prepare the master job'''

        from pandatools import Client
        from taskbuffer.JobSpec import JobSpec
        from taskbuffer.FileSpec import FileSpec

        job = app._getParent()
        logger.debug('ExecutablePandaRTHandler master_prepare called for %s', job.getFQID('.')) 

        # set chirp variables
        if configPanda['chirpconfig'] or configPanda['chirpserver']:
            setChirpVariables()

#       Pack inputsandbox
        inputsandbox = 'sources.%s.tar' % commands.getoutput('uuidgen 2> /dev/null') 
        inpw = job.getInputWorkspace()
        # add user script to inputsandbox
        if hasattr(job.application.exe, "name"):
            if not job.application.exe in job.inputsandbox:
                job.inputsandbox.append(job.application.exe)

        for fname in [f.name for f in job.inputsandbox]:
            fname.rstrip(os.sep)
            path = fname[:fname.rfind(os.sep)]
            f = fname[fname.rfind(os.sep)+1:]
            rc, output = commands.getstatusoutput('tar rf %s -C %s %s' % (inpw.getPath(inputsandbox), path, f))
            if rc:
                logger.error('Packing inputsandbox failed with status %d',rc)
                logger.error(output)
                raise ApplicationConfigurationError('Packing inputsandbox failed.')
        if len(job.inputsandbox) > 0:
            rc, output = commands.getstatusoutput('gzip %s' % (inpw.getPath(inputsandbox)))
            if rc:
                logger.error('Packing inputsandbox failed with status %d',rc)
                logger.error(output)
                raise ApplicationConfigurationError('Packing inputsandbox failed.')
            inputsandbox += ".gz"
        else:
            inputsandbox = None

#       Upload Inputsandbox
        if inputsandbox:
            logger.debug('Uploading source tarball ...')
            uploadSources(inpw.getPath(),os.path.basename(inputsandbox))
            self.inputsandbox = inputsandbox
        else:
            self.inputsandbox = None

#       input dataset
        if job.inputdata:
            if job.inputdata._name != 'DQ2Dataset':
                raise ApplicationConfigurationError('PANDA application supports only DQ2Datasets')

        # run brokerage here if not splitting
        if not job.splitter:
            from GangaPanda.Lib.Panda.Panda import runPandaBrokerage
            runPandaBrokerage(job)
        elif job.splitter._name not in ['DQ2JobSplitter', 'ArgSplitter', 'ArgSplitterTask']:
            raise ApplicationConfigurationError('Panda splitter must be DQ2JobSplitter or ArgSplitter')
        
        if job.backend.site == 'AUTO':
            raise ApplicationConfigurationError('site is still AUTO after brokerage!')

#       output dataset
        if job.outputdata:
            if job.outputdata._name != 'DQ2OutputDataset':
                raise ApplicationConfigurationError('Panda backend supports only DQ2OutputDataset')
        else:
            logger.info('Adding missing DQ2OutputDataset')
            job.outputdata = DQ2OutputDataset()

        job.outputdata.datasetname,outlfn = dq2outputdatasetname(job.outputdata.datasetname, job.id, job.outputdata.isGroupDS, job.outputdata.groupname)

        self.outDsLocation = Client.PandaSites[job.backend.site]['ddm']

        try:
            Client.addDataset(job.outputdata.datasetname,False,location=self.outDsLocation)
            logger.info('Output dataset %s registered at %s'%(job.outputdata.datasetname,self.outDsLocation))
            dq2_set_dataset_lifetime(job.outputdata.datasetname, location=self.outDsLocation)
        except exceptions.SystemExit:
            raise BackendError('Panda','Exception in Client.addDataset %s: %s %s'%(job.outputdata.datasetname,sys.exc_info()[0],sys.exc_info()[1]))

        # handle the libds
        if job.backend.libds:
            self.libDataset = job.backend.libds
            self.fileBO = getLibFileSpecFromLibDS(self.libDataset)
            self.library = self.fileBO.lfn
        elif job.backend.bexec:
            self.libDataset = job.outputdata.datasetname+'.lib'
            self.library = '%s.tgz' % self.libDataset
            try:
                Client.addDataset(self.libDataset,False,location=self.outDsLocation)
                dq2_set_dataset_lifetime(self.libDataset, location=self.outDsLocation)
                logger.info('Lib dataset %s registered at %s'%(self.libDataset,self.outDsLocation))
            except exceptions.SystemExit:
                raise BackendError('Panda','Exception in Client.addDataset %s: %s %s'%(self.libDataset,sys.exc_info()[0],sys.exc_info()[1]))

        # collect extOutFiles
        self.extOutFile = []
        for tmpName in job.outputdata.outputdata:
            if tmpName != '':
                self.extOutFile.append(tmpName)

        for tmpName in job.outputsandbox:
            if tmpName != '':
                self.extOutFile.append(tmpName)

        for tmpName in job.backend.extOutFile:
            if tmpName != '':
                self.extOutFile.append(tmpName)

        # create build job
        if job.backend.bexec != '':
            jspec = JobSpec()
            jspec.jobDefinitionID   = job.id
            jspec.jobName           = commands.getoutput('uuidgen 2> /dev/null')
            jspec.transformation    = '%s/buildGen-00-00-01' % Client.baseURLSUB
            if Client.isDQ2free(job.backend.site):
                jspec.destinationDBlock = '%s/%s' % (job.outputdata.datasetname,self.libDataset)
                jspec.destinationSE     = 'local'
            else:
                jspec.destinationDBlock = self.libDataset
                jspec.destinationSE     = job.backend.site
            jspec.prodSourceLabel   = configPanda['prodSourceLabelBuild']
            jspec.processingType    = configPanda['processingType']
            jspec.assignedPriority  = configPanda['assignedPriorityBuild']
            jspec.computingSite     = job.backend.site
            jspec.cloud             = job.backend.requirements.cloud
            jspec.jobParameters     = '-o %s' % (self.library)
            if self.inputsandbox:
                jspec.jobParameters     += ' -i %s' % (self.inputsandbox)
            else:
                raise ApplicationConfigurationError('Executable on Panda with build job defined, but inputsandbox is emtpy !')
            matchURL = re.search('(http.*://[^/]+)/',Client.baseURLCSRVSSL)
            if matchURL:
                jspec.jobParameters += ' --sourceURL %s ' % matchURL.group(1)
            if job.backend.bexec != '':
                jspec.jobParameters += ' --bexec "%s" ' % urllib.quote(job.backend.bexec)
                jspec.jobParameters += ' -r %s ' % '.'
                

            fout = FileSpec()
            fout.lfn  = self.library
            fout.type = 'output'
            fout.dataset = self.libDataset
            fout.destinationDBlock = self.libDataset
            jspec.addFile(fout)

            flog = FileSpec()
            flog.lfn = '%s.log.tgz' % self.libDataset
            flog.type = 'log'
            flog.dataset = self.libDataset
            flog.destinationDBlock = self.libDataset
            jspec.addFile(flog)
            return jspec
        else:
            return None
Exemplo n.º 8
0
for lfn in files.keys():
    index += 1
    job = JobSpec()
    job.jobDefinitionID = int(time.time()) % 10000
    job.jobName = "%s_%d" % (commands.getoutput('uuidgen'), index)
    job.AtlasRelease = 'Atlas-13.0.40'
    job.homepackage = 'AtlasProduction/13.0.40.3'
    job.transformation = 'csc_simul_trf.py'
    job.destinationDBlock = datasetName
    job.destinationSE = destName
    job.computingSite = site
    job.prodDBlock = 'valid1.005001.pythia_minbias.evgen.EVNT.e306_tid019128'

    job.prodSourceLabel = 'test'
    job.currentPriority = 10000
    job.cloud = 'IT'

    fileI = FileSpec()
    fileI.dataset = job.prodDBlock
    fileI.prodDBlock = job.prodDBlock
    fileI.lfn = lfn
    fileI.type = 'input'
    job.addFile(fileI)

    fileD = FileSpec()
    fileD.dataset = 'ddo.000001.Atlas.Ideal.DBRelease.v040701'
    fileD.prodDBlock = 'ddo.000001.Atlas.Ideal.DBRelease.v030101'
    fileD.lfn = 'DBRelease-4.7.1.tar.gz'
    fileD.type = 'input'
    job.addFile(fileD)
Exemplo n.º 9
0
    def master_prepare(self,app,appmasterconfig):

        # PandaTools
        from pandatools import Client
        from pandatools import AthenaUtils
        from taskbuffer.JobSpec import JobSpec
        from taskbuffer.FileSpec import FileSpec

        job = app._getParent()
        logger.debug('AthenaMCPandaRTHandler master_prepare called for %s', job.getFQID('.'))
        usertag = configDQ2['usertag']
        #usertag='user09'
        nickname = getNickname(allowMissingNickname=True)
        self.libDataset = '%s.%s.ganga.%s_%d.lib._%06d' % (usertag,nickname,commands.getoutput('hostname').split('.')[0],int(time.time()),job.id)
#        self.userprefix='%s.%s.ganga' % (usertag,gridProxy.identity())
        sources = 'sources.%s.tar.gz' % commands.getoutput('uuidgen 2> /dev/null') 
        self.library = '%s.lib.tgz' % self.libDataset

        # check DBRelease
        # if job.backend.dbRelease != '' and job.backend.dbRelease.find(':') == -1:
         #   raise ApplicationConfigurationError(None,"ERROR : invalid argument for backend.dbRelease. Must be 'DatasetName:FileName'")

#       unpack library
        logger.debug('Creating source tarball ...')        
        tmpdir = '/tmp/%s' % commands.getoutput('uuidgen 2> /dev/null')
        os.mkdir(tmpdir)

        inputbox=[]
        if os.path.exists(app.transform_archive):
            # must add a condition on size.
            inputbox += [ File(app.transform_archive) ]
        if app.evgen_job_option:
            self.evgen_job_option=app.evgen_job_option
            if os.path.exists(app.evgen_job_option):
                # locally modified job option file to add to the input sand box
                inputbox += [ File(app.evgen_job_option) ]
                self.evgen_job_option=app.evgen_job_option.split("/")[-1]

         
#       add input sandbox files
        if (job.inputsandbox):
            for file in job.inputsandbox:
                inputbox += [ file ]
#        add option files
        for extFile in job.backend.extOutFile:
            try:
                shutil.copy(extFile,tmpdir)
            except IOError:
                os.makedirs(tmpdir)
                shutil.copy(extFile,tmpdir)
#       fill the archive
        for opt_file in inputbox:
            try:
                shutil.copy(opt_file.name,tmpdir)
            except IOError:
                os.makedirs(tmpdir)
                shutil.copy(opt_file.name,tmpdir)
#       now tar it up again

        inpw = job.getInputWorkspace()
        rc, output = commands.getstatusoutput('tar czf %s -C %s .' % (inpw.getPath(sources),tmpdir))
        if rc:
            logger.error('Packing sources failed with status %d',rc)
            logger.error(output)
            raise ApplicationConfigurationError(None,'Packing sources failed.')

        shutil.rmtree(tmpdir)

#       upload sources

        logger.debug('Uploading source tarball ...')
        try:
            cwd = os.getcwd()
            os.chdir(inpw.getPath())
            rc, output = Client.putFile(sources)
            if output != 'True':
                logger.error('Uploading sources %s failed. Status = %d', sources, rc)
                logger.error(output)
                raise ApplicationConfigurationError(None,'Uploading archive failed')
        finally:
            os.chdir(cwd)      


        # Use Panda's brokerage
##         if job.inputdata and len(app.sites)>0:
##             # update cloud, use inputdata's
##             from dq2.info.TiersOfATLAS import whichCloud,ToACache
##             inclouds=[]
##             for site in app.sites:
##                 cloudSite=whichCloud(app.sites[0])
##                 if cloudSite not in inclouds:
##                     inclouds.append(cloudSite)
##             # now converting inclouds content into proper brokering stuff.
##             outclouds=[]
##             for cloudSite in inclouds:
##                 for cloudID, eachCloud in ToACache.dbcloud.iteritems():
##                     if cloudSite==eachCloud:
##                         cloud=cloudID
##                         outclouds.append(cloud)
##                         break
                    
##             print outclouds
##             # finally, matching with user's wishes
##             if len(outclouds)>0:
##                 if not job.backend.requirements.cloud: # no user wish, update
##                     job.backend.requirements.cloud=outclouds[0]
##                 else:
##                     try:
##                         assert job.backend.requirements.cloud in outclouds
##                     except:
##                         raise ApplicationConfigurationError(None,'Input dataset not available in target cloud %s. Please try any of the following %s' % (job.backend.requirements.cloud, str(outclouds)))
                                                            
        from GangaPanda.Lib.Panda.Panda import runPandaBrokerage
        
        runPandaBrokerage(job)
        
        if job.backend.site == 'AUTO':
            raise ApplicationConfigurationError(None,'site is still AUTO after brokerage!')

        # output dataset preparation and registration
        try:
            outDsLocation = Client.PandaSites[job.backend.site]['ddm']
        except:
            raise ApplicationConfigurationError(None,"Could not extract output dataset location from job.backend.site value: %s. Aborting" % job.backend.site)
        if not app.dryrun:
            for outtype in app.outputpaths.keys():
                dset=string.replace(app.outputpaths[outtype],"/",".")
                dset=dset[1:]
                # dataset registration must be done only once.
                print "registering output dataset %s at %s" % (dset,outDsLocation)
                try:
                    Client.addDataset(dset,False,location=outDsLocation)
                    dq2_set_dataset_lifetime(dset, location=outDsLocation)
                except:
                    raise ApplicationConfigurationError(None,"Fail to create output dataset %s. Aborting" % dset)
            # extend registration to build job lib dataset:
            print "registering output dataset %s at %s" % (self.libDataset,outDsLocation)

            try:
                Client.addDataset(self.libDataset,False,location=outDsLocation)
                dq2_set_dataset_lifetime(self.libDataset, outDsLocation)
            except:
                raise ApplicationConfigurationError(None,"Fail to create output dataset %s. Aborting" % self.libDataset)


        ###
        cacheVer = "-AtlasProduction_" + str(app.prod_release)
            
        logger.debug("master job submit?")
        self.outsite=job.backend.site
        if app.se_name and app.se_name != "none" and not self.outsite:
            self.outsite=app.se_name

       
        #       create build job
        jspec = JobSpec()
        jspec.jobDefinitionID   = job.id
        jspec.jobName           = commands.getoutput('uuidgen 2> /dev/null')
        jspec.AtlasRelease      = 'Atlas-%s' % app.atlas_rel
        jspec.homepackage       = 'AnalysisTransforms'+cacheVer#+nightVer
        jspec.transformation    = '%s/buildJob-00-00-03' % Client.baseURLSUB # common base to Athena and AthenaMC jobs: buildJob is a pilot job which takes care of all inputs for the real jobs (in prepare()
        jspec.destinationDBlock = self.libDataset
        jspec.destinationSE     = job.backend.site
        jspec.prodSourceLabel   = 'panda'
        jspec.assignedPriority  = 2000
        jspec.computingSite     = job.backend.site
        jspec.cloud             = job.backend.requirements.cloud
#        jspec.jobParameters     = self.args not known yet
        jspec.jobParameters     = '-o %s' % (self.library)
        if app.userarea:
            print app.userarea
            jspec.jobParameters     += ' -i %s' % (os.path.basename(app.userarea))
        else:
            jspec.jobParameters     += ' -i %s' % (sources)
        jspec.cmtConfig         = AthenaUtils.getCmtConfig(athenaVer=app.atlas_rel)
        
        matchURL = re.search('(http.*://[^/]+)/',Client.baseURLSSL)
        if matchURL:
            jspec.jobParameters += ' --sourceURL %s' % matchURL.group(1)

        fout = FileSpec()
        fout.lfn  = self.library
        fout.type = 'output'
        fout.dataset = self.libDataset
        fout.destinationDBlock = self.libDataset
        jspec.addFile(fout)

        flog = FileSpec()
        flog.lfn = '%s.log.tgz' % self.libDataset
        flog.type = 'log'
        flog.dataset = self.libDataset
        flog.destinationDBlock = self.libDataset
        jspec.addFile(flog)
        #print "MASTER JOB DETAILS:",jspec.jobParameters

        return jspec
Exemplo n.º 10
0
    def prepare(self, app, appsubconfig, appmasterconfig, jobmasterconfig):
        """Prepare the specific aspec of each subjob.
           Returns: subjobconfig list of objects understood by backends."""

        from pandatools import Client
        from pandatools import AthenaUtils
        from taskbuffer.JobSpec import JobSpec
        from taskbuffer.FileSpec import FileSpec
        from GangaAtlas.Lib.ATLASDataset.DQ2Dataset import dq2_set_dataset_lifetime
        from GangaPanda.Lib.Panda.Panda import refreshPandaSpecs

        # make sure we have the correct siteType
        refreshPandaSpecs()

        job = app._getParent()
        masterjob = job._getRoot()

        logger.debug('ProdTransPandaRTHandler prepare called for %s',
                     job.getFQID('.'))

        job.backend.actualCE = job.backend.site
        job.backend.requirements.cloud = Client.PandaSites[
            job.backend.site]['cloud']

        # check that the site is in a submit-able status
        if not job.splitter or job.splitter._name != 'DQ2JobSplitter':
            allowed_sites = job.backend.list_ddm_sites()

        try:
            outDsLocation = Client.PandaSites[job.backend.site]['ddm']
            tmpDsExist = False
            if (configPanda['processingType'].startswith('gangarobot') or
                    configPanda['processingType'].startswith('hammercloud')):
                #if Client.getDatasets(job.outputdata.datasetname):
                if getDatasets(job.outputdata.datasetname):
                    tmpDsExist = True
                    logger.info('Re-using output dataset %s' %
                                job.outputdata.datasetname)
            if not configPanda[
                    'specialHandling'] == 'ddm:rucio' and not configPanda[
                        'processingType'].startswith(
                            'gangarobot'
                        ) and not configPanda['processingType'].startswith(
                            'hammercloud') and not configPanda[
                                'processingType'].startswith('rucio_test'):
                Client.addDataset(job.outputdata.datasetname,
                                  False,
                                  location=outDsLocation,
                                  allowProdDisk=True,
                                  dsExist=tmpDsExist)
            logger.info('Output dataset %s registered at %s' %
                        (job.outputdata.datasetname, outDsLocation))
            dq2_set_dataset_lifetime(job.outputdata.datasetname, outDsLocation)
        except exceptions.SystemExit:
            raise BackendError(
                'Panda', 'Exception in adding dataset %s: %s %s' %
                (job.outputdata.datasetname, sys.exc_info()[0],
                 sys.exc_info()[1]))

        # JobSpec.
        jspec = JobSpec()
        jspec.currentPriority = app.priority
        jspec.jobDefinitionID = masterjob.id
        jspec.jobName = commands.getoutput('uuidgen 2> /dev/null')
        jspec.coreCount = app.core_count
        jspec.AtlasRelease = 'Atlas-%s' % app.atlas_release
        jspec.homepackage = app.home_package
        jspec.transformation = app.transformation
        jspec.destinationDBlock = job.outputdata.datasetname
        if job.outputdata.location:
            jspec.destinationSE = job.outputdata.location
        else:
            jspec.destinationSE = job.backend.site
        if job.inputdata:
            jspec.prodDBlock = job.inputdata.dataset[0]
        else:
            jspec.prodDBlock = 'NULL'
        if app.prod_source_label:
            jspec.prodSourceLabel = app.prod_source_label
        else:
            jspec.prodSourceLabel = configPanda['prodSourceLabelRun']
        jspec.processingType = configPanda['processingType']
        jspec.specialHandling = configPanda['specialHandling']
        jspec.computingSite = job.backend.site
        jspec.cloud = job.backend.requirements.cloud
        jspec.cmtConfig = app.atlas_cmtconfig
        if app.dbrelease == 'LATEST':
            try:
                latest_dbrelease = getLatestDBReleaseCaching()
            except:
                from pandatools import Client
                latest_dbrelease = Client.getLatestDBRelease()
            m = re.search('(.*):DBRelease-(.*)\.tar\.gz', latest_dbrelease)
            if m:
                self.dbrelease_dataset = m.group(1)
                self.dbrelease = m.group(2)
            else:
                raise ApplicationConfigurationError(
                    None,
                    "Error retrieving LATEST DBRelease. Try setting application.dbrelease manually."
                )
        else:
            self.dbrelease_dataset = app.dbrelease_dataset
            self.dbrelease = app.dbrelease
        jspec.jobParameters = app.job_parameters

        if self.dbrelease:
            if self.dbrelease == 'current':
                jspec.jobParameters += ' --DBRelease=current'
            else:
                if jspec.transformation.endswith(
                        "_tf.py") or jspec.transformation.endswith("_tf"):
                    jspec.jobParameters += ' --DBRelease=DBRelease-%s.tar.gz' % (
                        self.dbrelease, )
                else:
                    jspec.jobParameters += ' DBRelease=DBRelease-%s.tar.gz' % (
                        self.dbrelease, )
                dbspec = FileSpec()
                dbspec.lfn = 'DBRelease-%s.tar.gz' % self.dbrelease
                dbspec.dataset = self.dbrelease_dataset
                dbspec.prodDBlock = jspec.prodDBlock
                dbspec.type = 'input'
                jspec.addFile(dbspec)

        if job.inputdata:
            m = re.search('(.*)\.(.*)\.(.*)\.(.*)\.(.*)\.(.*)',
                          job.inputdata.dataset[0])
            if not m:
                logger.error("Error retrieving run number from dataset name")
                #raise ApplicationConfigurationError(None, "Error retrieving run number from dataset name")
                runnumber = 105200
            else:
                runnumber = int(m.group(2))
            if jspec.transformation.endswith(
                    "_tf.py") or jspec.transformation.endswith("_tf"):
                jspec.jobParameters += ' --runNumber %d' % runnumber
            else:
                jspec.jobParameters += ' RunNumber=%d' % runnumber

        # Output files.
        randomized_lfns = []
        ilfn = 0
        for lfn, lfntype in zip(app.output_files, app.output_type):
            ofspec = FileSpec()
            if app.randomize_lfns:
                randomized_lfn = lfn + (
                    '.%s.%d.%s' %
                    (job.backend.site, int(time.time()),
                     commands.getoutput('uuidgen 2> /dev/null')[:4]))
            else:
                randomized_lfn = lfn
            ofspec.lfn = randomized_lfn
            randomized_lfns.append(randomized_lfn)
            ofspec.destinationDBlock = jspec.destinationDBlock
            ofspec.destinationSE = jspec.destinationSE
            ofspec.dataset = jspec.destinationDBlock
            ofspec.type = 'output'
            jspec.addFile(ofspec)
            if jspec.transformation.endswith(
                    "_tf.py") or jspec.transformation.endswith("_tf"):
                jspec.jobParameters += ' --output%sFile %s' % (
                    lfntype, randomized_lfns[ilfn])
            else:
                jspec.jobParameters += ' output%sFile=%s' % (
                    lfntype, randomized_lfns[ilfn])
            ilfn = ilfn + 1

        # Input files.
        if job.inputdata:
            for guid, lfn, size, checksum, scope in zip(
                    job.inputdata.guids, job.inputdata.names,
                    job.inputdata.sizes, job.inputdata.checksums,
                    job.inputdata.scopes):
                ifspec = FileSpec()
                ifspec.lfn = lfn
                ifspec.GUID = guid
                ifspec.fsize = size
                ifspec.md5sum = checksum
                ifspec.scope = scope
                ifspec.dataset = jspec.prodDBlock
                ifspec.prodDBlock = jspec.prodDBlock
                ifspec.type = 'input'
                jspec.addFile(ifspec)
            if app.input_type:
                itype = app.input_type
            else:
                itype = m.group(5)
            if jspec.transformation.endswith(
                    "_tf.py") or jspec.transformation.endswith("_tf"):
                jspec.jobParameters += ' --input%sFile %s' % (itype, ','.join(
                    job.inputdata.names))
            else:
                jspec.jobParameters += ' input%sFile=%s' % (itype, ','.join(
                    job.inputdata.names))

        # Log files.
        lfspec = FileSpec()
        lfspec.lfn = '%s.job.log.tgz' % jspec.jobName
        lfspec.destinationDBlock = jspec.destinationDBlock
        lfspec.destinationSE = jspec.destinationSE
        lfspec.dataset = jspec.destinationDBlock
        lfspec.type = 'log'
        jspec.addFile(lfspec)

        return jspec
Exemplo n.º 11
0
job = JobSpec()
job.jobDefinitionID = int(time.time()) % 10000
job.jobName = "%s_%d" % (commands.getoutput('uuidgen'), index)
job.AtlasRelease = 'Atlas-14.1.0\nAtlas-14.1.0'
job.homepackage = 'AtlasProduction/14.1.0.3\nAtlasProduction/14.1.0.3'
job.transformation = 'csc_digi_trf.py\ncsc_reco_trf.py'
job.destinationDBlock = datasetName

job.computingSite = site

job.prodDBlock = 'valid1.005200.T1_McAtNlo_Jimmy.simul.HITS.e322_s429_tid022081'

job.prodSourceLabel = 'test'
job.currentPriority = 10000
job.cloud = 'US'

for lfn in ['HITS.022081._00001.pool.root', 'HITS.022081._00002.pool.root']:
    fileI = FileSpec()
    fileI.dataset = job.prodDBlock
    fileI.prodDBlock = job.prodDBlock
    fileI.lfn = lfn
    fileI.type = 'input'
    job.addFile(fileI)

fileD1 = FileSpec()
fileD1.dataset = 'ddo.000001.Atlas.Ideal.DBRelease.v050001'
fileD1.prodDBlock = fileD1.dataset
fileD1.lfn = 'DBRelease-5.0.1.tar.gz'
fileD1.type = 'input'
job.addFile(fileD1)
Exemplo n.º 12
0
    def createJobSpec(self, task, outdataset, job, jobset, jobdef, site,
                      jobname, lfnhanger, allsites, jobid):
        """Create a spec for one job

        :arg TaskWorker.DataObject.Task task: the task to work on
        :arg str outdataset: the output dataset name where all the produced files will be placed
        :arg WMCore.DataStructs.Job job: the abstract job
        :arg int jobset: the PanDA jobset corresponding to the current task
        :arg int jobdef: the PanDA jobdef where to append the current jobs --- not used
        :arg str site: the borkered site where to run the jobs
        :arg str jobname: the job name
        :arg str lfnhanger: the random string to be added in the output file name
        :arg list str allsites: all possible sites where the job can potentially run
        :arg int jobid: incremental job number
        :return: the sepc object."""

        pandajob = JobSpec()
        ## always setting a job definition ID
        pandajob.jobDefinitionID = jobdef if jobdef else -1
        ## always setting a job set ID
        pandajob.jobsetID = jobset if jobset else -1
        pandajob.jobName = jobname
        pandajob.prodUserID = task['tm_user_dn']
        pandajob.destinationDBlock = outdataset
        pandajob.prodDBlock = task['tm_input_dataset']
        pandajob.prodSourceLabel = 'user'
        pandajob.computingSite = site
        pandajob.cloud = getSite(pandajob.computingSite)
        pandajob.destinationSE = 'local'
        pandajob.transformation = task['tm_transformation']
        ## need to initialize this
        pandajob.metadata = ''

        def outFileSpec(of=None, log=False):
            """Local routine to create an FileSpec for the an job output/log file

               :arg str of: output file base name
               :return: FileSpec object for the output file."""
            outfile = FileSpec()
            if log:
                outfile.lfn = "job.log_%d_%s.tgz" % (jobid, lfnhanger)
                outfile.type = 'log'
            else:
                outfile.lfn = '%s_%d_%s%s' % (os.path.splitext(of)[0],
                                              jobid, lfnhanger,
                                              os.path.splitext(of)[1])
                outfile.type = 'output'
            outfile.destinationDBlock = pandajob.destinationDBlock
            outfile.destinationSE = task['tm_asyncdest']
            outfile.dataset = pandajob.destinationDBlock
            return outfile

        alloutfiles = []
        outjobpar = {}
        outfilestring = ''
        for outputfile in task['tm_outfiles']:
            outfilestring += '%s,' % outputfile
            filespec = outFileSpec(outputfile)
            alloutfiles.append(filespec)
            #pandajob.addFile(filespec)
            outjobpar[outputfile] = filespec.lfn
        for outputfile in task['tm_tfile_outfiles']:
            outfilestring += '%s,' % outputfile
            filespec = outFileSpec(outputfile)
            alloutfiles.append(filespec)
            #pandajob.addFile(filespec)
            outjobpar[outputfile] = filespec.lfn
        for outputfile in task['tm_edm_outfiles']:
            outfilestring += '%s,' % outputfile
            filespec = outFileSpec(outputfile)
            alloutfiles.append(filespec)
            #pandajob.addFile(filespec)
            outjobpar[outputfile] = filespec.lfn
        outfilestring = outfilestring[:-1]

        infiles = []
        for inputfile in job['input_files']:
            infiles.append(inputfile['lfn'])

        pandajob.jobParameters = '-a %s ' % task['tm_user_sandbox']
        pandajob.jobParameters += '--sourceURL %s ' % task['tm_cache_url']
        pandajob.jobParameters += '--jobNumber=%s ' % jobid
        pandajob.jobParameters += '--cmsswVersion=%s ' % task['tm_job_sw']
        pandajob.jobParameters += '--scramArch=%s ' % task['tm_job_arch']
        pandajob.jobParameters += '--inputFile=\'%s\' ' % json.dumps(infiles)

        self.jobParametersSetting(pandajob, job,
                                  self.jobtypeMapper[task['tm_job_type']])

        pandajob.jobParameters += '-o "%s" ' % str(outjobpar)
        pandajob.jobParameters += '--dbs_url=%s ' % task['tm_dbs_url']
        pandajob.jobParameters += '--publish_dbs_url=%s ' % task[
            'tm_publish_dbs_url']
        pandajob.jobParameters += '--publishFiles=%s ' % (
            'True' if task['tm_publication'] == 'T' else 'False')
        pandajob.jobParameters += '--saveLogs=%s ' % (
            'True' if task['tm_save_logs'] == 'T' else 'False')
        pandajob.jobParameters += '--availableSites=\'%s\' ' % json.dumps(
            allsites)

        pandajob.jobParameters += '--group=%s ' % (
            task['tm_user_group'] if task['tm_user_group'] else '')
        pandajob.jobParameters += '--role=%s ' % (task['tm_user_role'] if
                                                  task['tm_user_role'] else '')

        self.logger.info(type(task['tm_user_infiles']))
        self.logger.info(task['tm_user_infiles'])

        if task['tm_user_infiles']:
            addinfilestring = ''
            for addinfile in task['tm_user_infiles']:
                addinfilestring += '%s,' % addinfile
            pandajob.jobParameters += '--userFiles=%s ' % (
                addinfilestring[:-1])

        pandajob.jobName = '%s' % task[
            'tm_taskname']  #Needed by ASO and Dashboard

        if 'panda_oldjobid' in job and job['panda_oldjobid']:
            pandajob.parentID = job['panda_oldjobid']

        pandajob.addFile(outFileSpec(log=True))
        for filetoadd in alloutfiles:
            pandajob.addFile(filetoadd)

        return pandajob
Exemplo n.º 13
0
for lfn in files.keys():
    index += 1
    job = JobSpec()
    job.jobDefinitionID   = int(time.time()) % 10000
    job.jobName           = "%s_%d" % (commands.getoutput('uuidgen'),index)
    job.AtlasRelease      = 'Atlas-13.0.40'
    job.homepackage       = 'AtlasProduction/13.0.40.3'
    job.transformation    = 'csc_simul_trf.py'
    job.destinationDBlock = datasetName
    job.destinationSE     = destName
    job.computingSite     = site
    job.prodDBlock        = 'valid1.005001.pythia_minbias.evgen.EVNT.e306_tid019128'
    
    job.prodSourceLabel   = 'test'    
    job.currentPriority   = 10000
    job.cloud             = 'IT'

    fileI = FileSpec()
    fileI.dataset    = job.prodDBlock
    fileI.prodDBlock = job.prodDBlock
    fileI.lfn = lfn
    fileI.type = 'input'
    job.addFile(fileI)

    fileD = FileSpec()
    fileD.dataset    = 'ddo.000001.Atlas.Ideal.DBRelease.v040701'
    fileD.prodDBlock = 'ddo.000001.Atlas.Ideal.DBRelease.v030101'
    fileD.lfn = 'DBRelease-4.7.1.tar.gz'
    fileD.type = 'input'
    job.addFile(fileD)
Exemplo n.º 14
0
def send_job(jobid, siteid):
    _logger.debug('Jobid: ' + str(jobid))

    site = sites_.get(siteid)

    job = jobs_.get(int(jobid))
    cont = job.container
    files_catalog = cont.files

    fscope = getScope(job.owner.username)
    datasetName = '{}:{}'.format(fscope, cont.guid)

    distributive = job.distr.name
    release = job.distr.release

    # Prepare runScript
    parameters = job.distr.command
    parameters = parameters.replace("$COMMAND$", job.params)
    parameters = parameters.replace("$USERNAME$", job.owner.username)
    parameters = parameters.replace("$WORKINGGROUP$", job.owner.working_group)

    # Prepare metadata
    metadata = dict(user=job.owner.username)

    # Prepare PanDA Object
    pandajob = JobSpec()
    pandajob.jobDefinitionID = int(time.time()) % 10000
    pandajob.jobName = cont.guid
    pandajob.transformation = client_config.DEFAULT_TRF
    pandajob.destinationDBlock = datasetName
    pandajob.destinationSE = site.se
    pandajob.currentPriority = 1000
    pandajob.prodSourceLabel = 'user'
    pandajob.computingSite = site.ce
    pandajob.cloud = 'RU'
    pandajob.VO = 'atlas'
    pandajob.prodDBlock = "%s:%s" % (fscope, pandajob.jobName)
    pandajob.coreCount = job.corecount
    pandajob.metadata = json.dumps(metadata)
    #pandajob.workingGroup = job.owner.working_group

    if site.encode_commands:
        # It requires script wrapper on cluster side
        pandajob.jobParameters = '%s %s %s "%s"' % (cont.guid, release, distributive, parameters)
    else:
        pandajob.jobParameters = parameters


    has_input = False
    for fcc in files_catalog:
        if fcc.type == 'input':
            f = fcc.file
            guid = f.guid
            fileIT = FileSpec()
            fileIT.lfn = f.lfn
            fileIT.dataset = pandajob.prodDBlock
            fileIT.prodDBlock = pandajob.prodDBlock
            fileIT.type = 'input'
            fileIT.scope = fscope
            fileIT.status = 'ready'
            fileIT.GUID = guid
            pandajob.addFile(fileIT)

            has_input = True
        if fcc.type == 'output':
            f = fcc.file
            fileOT = FileSpec()
            fileOT.lfn = f.lfn
            fileOT.destinationDBlock = pandajob.prodDBlock
            fileOT.destinationSE = pandajob.destinationSE
            fileOT.dataset = pandajob.prodDBlock
            fileOT.type = 'output'
            fileOT.scope = fscope
            fileOT.GUID = f.guid
            pandajob.addFile(fileOT)

            # Save replica meta
            fc.new_replica(f, site)

    if not has_input:
        # Add fake input
        fileIT = FileSpec()
        fileIT.lfn = "fake.input"
        fileIT.dataset = pandajob.prodDBlock
        fileIT.prodDBlock = pandajob.prodDBlock
        fileIT.type = 'input'
        fileIT.scope = fscope
        fileIT.status = 'ready'
        fileIT.GUID = "fake.guid"
        pandajob.addFile(fileIT)

    # Prepare lof file
    fileOL = FileSpec()
    fileOL.lfn = "%s.log.tgz" % pandajob.jobName
    fileOL.destinationDBlock = pandajob.destinationDBlock
    fileOL.destinationSE = pandajob.destinationSE
    fileOL.dataset = '{}:logs'.format(fscope)
    fileOL.type = 'log'
    fileOL.scope = 'panda'
    pandajob.addFile(fileOL)

    # Save log meta
    log = File()
    log.scope = fscope
    log.lfn = fileOL.lfn
    log.guid = getGUID(log.scope, log.lfn)
    log.type = 'log'
    log.status = 'defined'
    files_.save(log)

    # Save replica meta
    fc.new_replica(log, site)

    # Register file in container
    fc.reg_file_in_cont(log, cont, 'log')

    # Submit job
    o = submitJobs([pandajob])
    x = o[0]

    try:
        #update PandaID
        PandaID = int(x[0])
        job.pandaid = PandaID
        job.ce = site.ce
    except:
        job.status = 'submit_error'
    jobs_.save(job)

    return 0
Exemplo n.º 15
0
index = 0
for lfn in files.keys():
    index += 1
    job = JobSpec()
    job.jobDefinitionID   = int(time.time()) % 10000
    job.jobName           = "%s_%d" % (commands.getoutput('uuidgen'),index)
    job.AtlasRelease      = 'Atlas-12.0.6'
    job.homepackage       = 'AtlasProduction/12.0.6.4'
    job.transformation    = 'csc_reco_trf.py'
    job.destinationDBlock = datasetName
    job.destinationSE     = destName
    job.computingSite     = site
    #job.prodDBlock        = 'misal1_mc12.005200.T1_McAtNlo_Jimmy.digit.RDO.v12000601_tid007554'
    job.prodDBlock        = 'misal1_mc12.005802.JF17_pythia_jet_filter.digit.RDO.v12000601_tid008610' 
    job.cloud             = 'US'   

    job.prodSourceLabel   = 'test'    
    job.currentPriority   = 10000
    job.cmtConfig         = 'i686-slc4-gcc34-opt'

    fileI = FileSpec()
    fileI.dataset    = job.prodDBlock
    fileI.prodDBlock = job.prodDBlock
    fileI.lfn = lfn
    fileI.type = 'input'
    job.addFile(fileI)

    fileD = FileSpec()
    fileD.dataset    = 'ddo.000001.Atlas.Ideal.DBRelease.v030101'
    fileD.prodDBlock = 'ddo.000001.Atlas.Ideal.DBRelease.v030101'
Exemplo n.º 16
0
    def prepare(self,app,appconfig,appmasterconfig,jobmasterconfig):
        '''prepare the subjob specific configuration'''
 
        # PandaTools
        from pandatools import Client
        from pandatools import AthenaUtils
        from taskbuffer.JobSpec import JobSpec
        from taskbuffer.FileSpec import FileSpec

        job = app._getParent()
        logger.debug('AthenaMCPandaRTHandler prepare called for %s', job.getFQID('.'))
        
        try:
            assert self.outsite
        except:
            logger.error("outsite not set. Aborting")
            raise Exception()
        
        job.backend.site = self.outsite
        job.backend.actualCE = self.outsite
        cloud = job._getRoot().backend.requirements.cloud
        job.backend.requirements.cloud = cloud
        

        # now just filling the job from AthenaMC data
        
        jspec = JobSpec()
        jspec.jobDefinitionID   = job._getRoot().id
        jspec.jobName           = commands.getoutput('uuidgen 2> /dev/null')  
        jspec.AtlasRelease      = 'Atlas-%s' % app.atlas_rel
        
        if app.transform_archive:
            jspec.homepackage       = 'AnalysisTransforms'+app.transform_archive
        elif app.prod_release:
            jspec.homepackage       = 'AnalysisTransforms-AtlasProduction_'+str(app.prod_release)
        jspec.transformation    = '%s/runAthena-00-00-11' % Client.baseURLSUB
            
        #---->????  prodDBlock and destinationDBlock when facing several input / output datasets?

        jspec.prodDBlock    = 'NULL'
        if job.inputdata and len(app.inputfiles)>0 and app.inputfiles[0] in app.dsetmap:
            jspec.prodDBlock    = app.dsetmap[app.inputfiles[0]]

        # How to specify jspec.destinationDBlock  when more than one type of output is available? Panda prod jobs seem to specify only the last output dataset
        outdset=""
        for type in ["EVNT","RDO","HITS","AOD","ESD","NTUP"]:
            if type in app.outputpaths.keys():
                outdset=string.replace(app.outputpaths[type],"/",".")
                outdset=outdset[1:-1]
                break
        if not outdset:
            try:
                assert len(app.outputpaths.keys())>0
            except:
                logger.error("app.outputpaths is empty: check your output datasets")
                raise
            type=app.outputpaths.keys()[0]
            outdset=string.replace(app.outputpaths[type],"/",".")
            outdset=outdset[1:-1]
            
        jspec.destinationDBlock = outdset
        jspec.destinationSE = self.outsite
        jspec.prodSourceLabel   = 'user'
        jspec.assignedPriority  = 1000
        jspec.cloud             = cloud
        # memory
        if job.backend.requirements.memory != -1:
            jspec.minRamCount = job.backend.requirements.memory
        jspec.computingSite     = self.outsite
        jspec.cmtConfig         = AthenaUtils.getCmtConfig(athenaVer=app.atlas_rel)
#       library (source files)
        flib = FileSpec()
        flib.lfn            = self.library
#        flib.GUID           = 
        flib.type           = 'input'
#        flib.status         = 
        flib.dataset        = self.libDataset
        flib.dispatchDBlock = self.libDataset
        jspec.addFile(flib)

        #       input files FIXME: many more input types
        for lfn in app.inputfiles:
            useguid=app.turls[lfn].replace("guid:","")
            finp = FileSpec()
            finp.lfn            = lfn
            finp.GUID           = useguid
            finp.dataset        = app.dsetmap[lfn]
            finp.prodDBlock     = app.dsetmap[lfn]
            finp.prodDBlockToken = 'local'
            finp.dispatchDBlock = app.dsetmap[lfn]
            finp.type           = 'input'
            finp.status         = 'ready'
            jspec.addFile(finp)
        # add dbfiles if any:
        for lfn in app.dbfiles:
            useguid=app.dbturls[lfn].replace("guid:","")
            finp = FileSpec()
            finp.lfn            = lfn
            finp.GUID           = useguid
            finp.dataset        = app.dsetmap[lfn]
            finp.prodDBlock     = app.dsetmap[lfn]
            finp.prodDBlockToken = 'local'
            finp.dispatchDBlock = app.dsetmap[lfn]
            finp.type           = 'input'
            finp.status         = 'ready'
            jspec.addFile(finp)
        # then minbias files
        for lfn in app.mbfiles:
            useguid=app.minbias_turls[lfn].replace("guid:","")
            finp = FileSpec()
            finp.lfn            = lfn
            finp.GUID           = useguid
            finp.dataset        = app.dsetmap[lfn]
            finp.prodDBlock     = app.dsetmap[lfn]
            finp.prodDBlockToken = 'local'
            finp.dispatchDBlock = app.dsetmap[lfn]
            finp.type           = 'input'
            finp.status         = 'ready'
            jspec.addFile(finp)
        # then cavern files
        for lfn in app.cavernfiles:
            useguid=app.cavern_turls[lfn].replace("guid:","")
            finp = FileSpec()
            finp.lfn            = lfn
            finp.GUID           = useguid
            finp.dataset        = app.dsetmap[lfn]
            finp.prodDBlock     = app.dsetmap[lfn]
            finp.prodDBlockToken = 'local'
            finp.dispatchDBlock = app.dsetmap[lfn]
            finp.type           = 'input'
            finp.status         = 'ready'
            jspec.addFile(finp)
            

#       output files( this includes the logfiles)
        # Output files
        jidtag=""
        job = app._getParent() # Returns job or subjob object
        if job._getRoot().subjobs:
            jidtag = job._getRoot().id
        else:
            jidtag = "%d" % job.id       
        outfiles=app.subjobsOutfiles[job.id]
        pandaOutfiles={}
        for type in outfiles.keys():
            pandaOutfiles[type]=outfiles[type]+"."+str(jidtag)
            if type=="LOG":
                pandaOutfiles[type]+=".tgz"
        #print pandaOutfiles

        for outtype in pandaOutfiles.keys():
            fout = FileSpec()
            dset=string.replace(app.outputpaths[outtype],"/",".")
            dset=dset[1:-1]
            fout.dataset=dset
            fout.lfn=pandaOutfiles[outtype]
            fout.type              = 'output'
            #            fout.destinationDBlock = jspec.destinationDBlock
            fout.destinationDBlock = fout.dataset
            fout.destinationSE    = jspec.destinationSE
            if outtype=='LOG':
                fout.type='log'
                fout.destinationDBlock = fout.dataset
                fout.destinationSE     = job.backend.site
            jspec.addFile(fout)


        #       job parameters
        param =  '-l %s ' % self.library # user tarball.
        # use corruption checker
        if job.backend.requirements.corCheck:
            param += '--corCheck '
        # disable to skip missing files
        if job.backend.requirements.notSkipMissing:
            param += '--notSkipMissing '
        
        # transform parameters
        # need to update arglist with final output file name...
        newArgs=[]
        if app.mode == "evgen":
            app.args[3]=app.args[3]+" -t "
            if app.verbosity:
                app.args[3]=app.args[3]+" -l %s " % app.verbosity

        for arg in app.args[3:]:
            for type in outfiles.keys():
                if arg.find(outfiles[type])>-1:
                    arg=arg.replace(outfiles[type],pandaOutfiles[type])

            newArgs.append(arg)
        arglist=string.join(newArgs," ")
#        print "Arglist:",arglist

        param += ' -r ./ '
        param += ' -j "%s"' % urllib.quote(arglist)

        allinfiles=app.inputfiles+app.dbfiles
        # Input files.
        param += ' -i "%s" ' % allinfiles
        if len(app.mbfiles)>0:
            param+= ' -m "%s" ' % app.mbfiles
        if len(app.cavernfiles)>0:
            param+= ' -n "%s" ' % app.cavernfiles
        #        param += '-m "[]" ' #%minList FIXME
        #        param += '-n "[]" ' #%cavList FIXME

        del pandaOutfiles["LOG"] # logfiles do not appear in IROOT block, and this one is not needed anymore...
        param += ' -o "{\'IROOT\':%s }"' % str(pandaOutfiles.items())

        # source URL        
        matchURL = re.search("(http.*://[^/]+)/",Client.baseURLSSL)
        if matchURL != None:
            param += " --sourceURL %s " % matchURL.group(1)
        param += " --trf"


        jspec.jobParameters = param
        jspec.metadata="--trf \"%s\"" % arglist

        #print "SUBJOB DETAILS:",jspec.values()
        if app.dryrun:
            print "job.application.dryrun activated, printing out job parameters"
            print jspec.values()
            return
        
        return jspec
Exemplo n.º 17
0
    def createJobSpec(self, task, outdataset, job, jobset, jobdef, site, jobname, lfnhanger, allsites, jobid):
        """Create a spec for one job

        :arg TaskWorker.DataObject.Task task: the task to work on
        :arg str outdataset: the output dataset name where all the produced files will be placed
        :arg WMCore.DataStructs.Job job: the abstract job
        :arg int jobset: the PanDA jobset corresponding to the current task
        :arg int jobdef: the PanDA jobdef where to append the current jobs --- not used
        :arg str site: the borkered site where to run the jobs
        :arg str jobname: the job name
        :arg str lfnhanger: the random string to be added in the output file name
        :arg list str allsites: all possible sites where the job can potentially run
        :arg int jobid: incremental job number
        :return: the sepc object."""

        pandajob = JobSpec()
        ## always setting a job definition ID
        pandajob.jobDefinitionID = jobdef if jobdef else -1
        ## always setting a job set ID
        pandajob.jobsetID = jobset if jobset else -1
        pandajob.jobName = jobname
        pandajob.prodUserID = task['tm_user_dn']
        pandajob.destinationDBlock = outdataset
        pandajob.prodDBlock = task['tm_input_dataset']
        pandajob.prodSourceLabel = 'user'
        pandajob.computingSite = site
        pandajob.cloud = getSite(pandajob.computingSite)
        pandajob.destinationSE = 'local'
        pandajob.transformation = task['tm_transformation']
        ## need to initialize this
        pandajob.metadata = ''

        def outFileSpec(of=None, log=False):
            """Local routine to create an FileSpec for the an job output/log file

               :arg str of: output file base name
               :return: FileSpec object for the output file."""
            outfile = FileSpec()
            if log:
                outfile.lfn = "job.log_%d_%s.tgz" % (jobid, lfnhanger)
                outfile.type = 'log'
            else:
                outfile.lfn = '%s_%d_%s%s' %(os.path.splitext(of)[0], jobid, lfnhanger, os.path.splitext(of)[1])
                outfile.type = 'output'
            outfile.destinationDBlock = pandajob.destinationDBlock
            outfile.destinationSE = task['tm_asyncdest']
            outfile.dataset = pandajob.destinationDBlock
            return outfile

        alloutfiles = []
        outjobpar = {}
        outfilestring = ''
        for outputfile in task['tm_outfiles']:
            outfilestring += '%s,' % outputfile
            filespec = outFileSpec(outputfile)
            alloutfiles.append(filespec)
            #pandajob.addFile(filespec)
            outjobpar[outputfile] = filespec.lfn
        for outputfile in task['tm_tfile_outfiles']:
            outfilestring += '%s,' % outputfile
            filespec = outFileSpec(outputfile)
            alloutfiles.append(filespec)
            #pandajob.addFile(filespec)
            outjobpar[outputfile] = filespec.lfn
        for outputfile in task['tm_edm_outfiles']:
            outfilestring += '%s,' % outputfile
            filespec = outFileSpec(outputfile)
            alloutfiles.append(filespec)
            #pandajob.addFile(filespec)
            outjobpar[outputfile] = filespec.lfn
        outfilestring = outfilestring[:-1]

        infiles = []
        for inputfile in job['input_files']:
            infiles.append( inputfile['lfn'] )

        pandajob.jobParameters = '-a %s ' % task['tm_user_sandbox']
        pandajob.jobParameters += '--sourceURL %s ' % task['tm_cache_url']
        pandajob.jobParameters += '--jobNumber=%s ' % jobid
        pandajob.jobParameters += '--cmsswVersion=%s ' % task['tm_job_sw']
        pandajob.jobParameters += '--scramArch=%s ' % task['tm_job_arch']
        pandajob.jobParameters += '--inputFile=\'%s\' ' % json.dumps(infiles)

        self.jobParametersSetting(pandajob, job, self.jobtypeMapper[task['tm_job_type']])

        pandajob.jobParameters += '-o "%s" ' % str(outjobpar)
        pandajob.jobParameters += '--dbs_url=%s ' % task['tm_dbs_url']
        pandajob.jobParameters += '--publish_dbs_url=%s ' % task['tm_publish_dbs_url']
        pandajob.jobParameters += '--publishFiles=%s ' % ('True' if task['tm_publication'] == 'T' else 'False')
        pandajob.jobParameters += '--saveLogs=%s ' % ('True' if task['tm_save_logs'] == 'T' else 'False')
        pandajob.jobParameters += '--availableSites=\'%s\' ' %json.dumps(allsites)

        pandajob.jobParameters += '--group=%s ' % (task['tm_user_group'] if task['tm_user_group'] else '')
        pandajob.jobParameters += '--role=%s ' % (task['tm_user_role'] if task['tm_user_role'] else '')

        self.logger.info(type(task['tm_user_infiles']))
        self.logger.info(task['tm_user_infiles'])

        if task['tm_user_infiles']:
            addinfilestring = ''
            for addinfile in task['tm_user_infiles']:
                addinfilestring += '%s,' % addinfile
            pandajob.jobParameters += '--userFiles=%s ' % ( addinfilestring[:-1] )

        pandajob.jobName = '%s' % task['tm_taskname'] #Needed by ASO and Dashboard

        if 'panda_oldjobid' in job and job['panda_oldjobid']:
            pandajob.parentID = job['panda_oldjobid']

        pandajob.addFile(outFileSpec(log=True))
        for filetoadd in alloutfiles:
            pandajob.addFile(filetoadd)

        return pandajob
    def prepare(self, app, appsubconfig, appmasterconfig, jobmasterconfig):
        """Prepare the specific aspec of each subjob.
           Returns: subjobconfig list of objects understood by backends."""

        from pandatools import Client
        from pandatools import AthenaUtils
        from taskbuffer.JobSpec import JobSpec
        from taskbuffer.FileSpec import FileSpec
        from GangaAtlas.Lib.ATLASDataset.DQ2Dataset import dq2_set_dataset_lifetime
        from GangaPanda.Lib.Panda.Panda import refreshPandaSpecs
        
        # make sure we have the correct siteType
        refreshPandaSpecs()

        job = app._getParent()
        masterjob = job._getRoot()

        logger.debug('ProdTransPandaRTHandler prepare called for %s',
                     job.getFQID('.'))

        job.backend.actualCE = job.backend.site
        job.backend.requirements.cloud = Client.PandaSites[job.backend.site]['cloud']

        # check that the site is in a submit-able status
        if not job.splitter or job.splitter._name != 'DQ2JobSplitter':
            allowed_sites = job.backend.list_ddm_sites()

        try:
            outDsLocation = Client.PandaSites[job.backend.site]['ddm']
            tmpDsExist = False
            if (configPanda['processingType'].startswith('gangarobot') or configPanda['processingType'].startswith('hammercloud')):
                #if Client.getDatasets(job.outputdata.datasetname):
                if getDatasets(job.outputdata.datasetname):
                    tmpDsExist = True
                    logger.info('Re-using output dataset %s'%job.outputdata.datasetname)
            if not configPanda['specialHandling']=='ddm:rucio' and not  configPanda['processingType'].startswith('gangarobot') and not configPanda['processingType'].startswith('hammercloud') and not configPanda['processingType'].startswith('rucio_test'):
                Client.addDataset(job.outputdata.datasetname,False,location=outDsLocation,allowProdDisk=True,dsExist=tmpDsExist)
            logger.info('Output dataset %s registered at %s'%(job.outputdata.datasetname,outDsLocation))
            dq2_set_dataset_lifetime(job.outputdata.datasetname, outDsLocation)
        except exceptions.SystemExit:
            raise BackendError('Panda','Exception in adding dataset %s: %s %s'%(job.outputdata.datasetname,sys.exc_info()[0],sys.exc_info()[1]))
        
        # JobSpec.
        jspec = JobSpec()
        jspec.currentPriority = app.priority
        jspec.jobDefinitionID = masterjob.id
        jspec.jobName = commands.getoutput('uuidgen 2> /dev/null')
        jspec.coreCount = app.core_count
        jspec.AtlasRelease = 'Atlas-%s' % app.atlas_release
        jspec.homepackage = app.home_package
        jspec.transformation = app.transformation
        jspec.destinationDBlock = job.outputdata.datasetname
        if job.outputdata.location:
            jspec.destinationSE = job.outputdata.location
        else:
            jspec.destinationSE = job.backend.site
        if job.inputdata:
            jspec.prodDBlock = job.inputdata.dataset[0]
        else:
            jspec.prodDBlock = 'NULL'
        if app.prod_source_label:
            jspec.prodSourceLabel = app.prod_source_label
        else:
            jspec.prodSourceLabel = configPanda['prodSourceLabelRun']
        jspec.processingType = configPanda['processingType']
        jspec.specialHandling = configPanda['specialHandling']
        jspec.computingSite = job.backend.site
        jspec.cloud = job.backend.requirements.cloud
        jspec.cmtConfig = app.atlas_cmtconfig
        if app.dbrelease == 'LATEST':
            try:
                latest_dbrelease = getLatestDBReleaseCaching()
            except:
                from pandatools import Client
                latest_dbrelease = Client.getLatestDBRelease()
            m = re.search('(.*):DBRelease-(.*)\.tar\.gz', latest_dbrelease)
            if m:
                self.dbrelease_dataset = m.group(1)
                self.dbrelease = m.group(2)
            else:
                raise ApplicationConfigurationError(None, "Error retrieving LATEST DBRelease. Try setting application.dbrelease manually.")
        else:
            self.dbrelease_dataset = app.dbrelease_dataset
            self.dbrelease = app.dbrelease
        jspec.jobParameters = app.job_parameters

        if self.dbrelease:
            if self.dbrelease == 'current':
                jspec.jobParameters += ' --DBRelease=current' 
            else:
                if jspec.transformation.endswith("_tf.py") or jspec.transformation.endswith("_tf"):
                    jspec.jobParameters += ' --DBRelease=DBRelease-%s.tar.gz' % (self.dbrelease,)
                else:
                    jspec.jobParameters += ' DBRelease=DBRelease-%s.tar.gz' % (self.dbrelease,)
                dbspec = FileSpec()
                dbspec.lfn = 'DBRelease-%s.tar.gz' % self.dbrelease
                dbspec.dataset = self.dbrelease_dataset
                dbspec.prodDBlock = jspec.prodDBlock
                dbspec.type = 'input'
                jspec.addFile(dbspec)

        if job.inputdata:
            m = re.search('(.*)\.(.*)\.(.*)\.(.*)\.(.*)\.(.*)',
                          job.inputdata.dataset[0])
            if not m:
                logger.error("Error retrieving run number from dataset name")
                #raise ApplicationConfigurationError(None, "Error retrieving run number from dataset name")
                runnumber = 105200
            else:
                runnumber = int(m.group(2))
            if jspec.transformation.endswith("_tf.py") or jspec.transformation.endswith("_tf"):
                jspec.jobParameters += ' --runNumber %d' % runnumber
            else:
                jspec.jobParameters += ' RunNumber=%d' % runnumber
        
        # Output files.
        randomized_lfns = []
        ilfn = 0
        for lfn, lfntype in zip(app.output_files,app.output_type):
            ofspec = FileSpec()
            if app.randomize_lfns:
                randomized_lfn = lfn + ('.%s.%d.%s' % (job.backend.site, int(time.time()), commands.getoutput('uuidgen 2> /dev/null')[:4] ) )
            else:
                randomized_lfn = lfn
            ofspec.lfn = randomized_lfn
            randomized_lfns.append(randomized_lfn)
            ofspec.destinationDBlock = jspec.destinationDBlock
            ofspec.destinationSE = jspec.destinationSE
            ofspec.dataset = jspec.destinationDBlock
            ofspec.type = 'output'
            jspec.addFile(ofspec)
            if jspec.transformation.endswith("_tf.py") or jspec.transformation.endswith("_tf"):
                jspec.jobParameters += ' --output%sFile %s' % (lfntype, randomized_lfns[ilfn])
            else:
                jspec.jobParameters += ' output%sFile=%s' % (lfntype, randomized_lfns[ilfn])
            ilfn=ilfn+1

        # Input files.
        if job.inputdata:
            for guid, lfn, size, checksum, scope in zip(job.inputdata.guids, job.inputdata.names, job.inputdata.sizes, job.inputdata.checksums, job.inputdata.scopes):
                ifspec = FileSpec()
                ifspec.lfn = lfn
                ifspec.GUID = guid
                ifspec.fsize = size
                ifspec.md5sum = checksum
                ifspec.scope = scope
                ifspec.dataset = jspec.prodDBlock
                ifspec.prodDBlock = jspec.prodDBlock
                ifspec.type = 'input'
                jspec.addFile(ifspec)
            if app.input_type:
                itype = app.input_type
            else:
                itype = m.group(5)
            if jspec.transformation.endswith("_tf.py") or jspec.transformation.endswith("_tf"):
                jspec.jobParameters += ' --input%sFile %s' % (itype, ','.join(job.inputdata.names))
            else:
                jspec.jobParameters += ' input%sFile=%s' % (itype, ','.join(job.inputdata.names))

        # Log files.
        lfspec = FileSpec()
        lfspec.lfn = '%s.job.log.tgz' % jspec.jobName
        lfspec.destinationDBlock = jspec.destinationDBlock
        lfspec.destinationSE  = jspec.destinationSE
        lfspec.dataset = jspec.destinationDBlock
        lfspec.type = 'log'
        jspec.addFile(lfspec)
        
        return jspec
Exemplo n.º 19
0
jobList = []

for i in range(1):
    job = JobSpec()
    job.jobDefinitionID = int(time.time()) % 10000
    job.jobName = "%s_%d" % (commands.getoutput('uuidgen'), i)
    job.AtlasRelease = 'Atlas-17.0.5'
    job.homepackage = 'AtlasProduction/17.0.5.6'
    job.transformation = 'Evgen_trf.py'
    job.destinationDBlock = datasetName
    job.destinationSE = destName
    job.currentPriority = 10000
    job.prodSourceLabel = 'test'
    job.computingSite = site
    job.cloud = cloud
    job.cmtConfig = 'i686-slc5-gcc43-opt'

    file = FileSpec()
    file.lfn = "%s.evgen.pool.root" % job.jobName
    file.destinationDBlock = job.destinationDBlock
    file.destinationSE = job.destinationSE
    file.dataset = job.destinationDBlock
    file.destinationDBlockToken = 'ATLASDATADISK'
    file.type = 'output'
    job.addFile(file)

    fileOL = FileSpec()
    fileOL.lfn = "%s.job.log.tgz" % job.jobName
    fileOL.destinationDBlock = job.destinationDBlock
    fileOL.destinationSE = job.destinationSE
Exemplo n.º 20
0
    def prepare(self,app,appsubconfig,appmasterconfig,jobmasterconfig):
        '''prepare the subjob specific configuration'''
 
        from pandatools import Client
        from taskbuffer.JobSpec import JobSpec
        from taskbuffer.FileSpec import FileSpec

        job = app._getParent()
        logger.debug('AthenaPandaRTHandler prepare called for %s', job.getFQID('.'))

#       in case of a simple job get the dataset content, otherwise subjobs are filled by the splitter
        if job.inputdata and not job._getRoot().subjobs:

            if not job.inputdata.names:
                
                contents = job.inputdata.get_contents(overlap=False, size=True)

                for ds in contents.keys():

                    for f in contents[ds]:
                        job.inputdata.guids.append( f[0] )
                        job.inputdata.names.append( f[1][0] )
                        job.inputdata.sizes.append( f[1][1] )
                        job.inputdata.checksums.append( f[1][2] )
                        job.inputdata.scopes.append( f[1][3] )


        site = job._getRoot().backend.site
        job.backend.site = site
        job.backend.actualCE = site
        cloud = job._getRoot().backend.requirements.cloud
        job.backend.requirements.cloud = cloud

#       if no outputdata are given
        if not job.outputdata:
            job.outputdata = DQ2OutputDataset()
            job.outputdata.datasetname = job._getRoot().outputdata.datasetname
        #if not job.outputdata.datasetname:
        else:
            job.outputdata.datasetname = job._getRoot().outputdata.datasetname

        if not job.outputdata.datasetname:
            raise ApplicationConfigurationError('DQ2OutputDataset has no datasetname')

        jspec = JobSpec()
        jspec.jobDefinitionID   = job._getRoot().id
        jspec.jobName           = commands.getoutput('uuidgen 2> /dev/null')
        jspec.transformation    = '%s/runGen-00-00-02' % Client.baseURLSUB
        if job.inputdata:
            jspec.prodDBlock    = job.inputdata.dataset[0]
        else:
            jspec.prodDBlock    = 'NULL'
        jspec.destinationDBlock = job.outputdata.datasetname
        if job.outputdata.location:
            if not job._getRoot().subjobs or job.id == 0:
                logger.warning('You have specified outputdata.location. Note that Panda may not support writing to a user-defined output location.')
            jspec.destinationSE = job.outputdata.location
        else:
            jspec.destinationSE = site
        jspec.prodSourceLabel   = configPanda['prodSourceLabelRun']
        jspec.processingType    = configPanda['processingType']
        jspec.assignedPriority  = configPanda['assignedPriorityRun']
        jspec.cloud             = cloud
        # memory
        if job.backend.requirements.memory != -1:
            jspec.minRamCount = job.backend.requirements.memory
        # cputime     
        if job.backend.requirements.cputime != -1:
            jspec.maxCpuCount = job.backend.requirements.cputime
        jspec.computingSite     = site

#       library (source files)
        if job.backend.libds:
            flib = FileSpec()
            flib.lfn            = self.fileBO.lfn
            flib.GUID           = self.fileBO.GUID
            flib.type           = 'input'
            flib.status         = self.fileBO.status
            flib.dataset        = self.fileBO.destinationDBlock
            flib.dispatchDBlock = self.fileBO.destinationDBlock
            jspec.addFile(flib)
        elif job.backend.bexec:
            flib = FileSpec()
            flib.lfn            = self.library
            flib.type           = 'input'
            flib.dataset        = self.libDataset
            flib.dispatchDBlock = self.libDataset
            jspec.addFile(flib)

#       input files FIXME: many more input types
        if job.inputdata:            
            for guid, lfn, size, checksum, scope in zip(job.inputdata.guids,job.inputdata.names,job.inputdata.sizes, job.inputdata.checksums, job.inputdata.scopes):
                finp = FileSpec()
                finp.lfn            = lfn
                finp.GUID           = guid
                finp.scope          = scope
                
#            finp.fsize =
#            finp.md5sum =
                finp.dataset        = job.inputdata.dataset[0]
                finp.prodDBlock     = job.inputdata.dataset[0]
                finp.dispatchDBlock = job.inputdata.dataset[0]
                finp.type           = 'input'
                finp.status         = 'ready'
                jspec.addFile(finp)

#       output files
#        outMap = {}
        
        #FIXME: if options.outMeta != []:
        self.rundirectory = "."

#       log files

        flog = FileSpec()
        flog.lfn = '%s._$PANDAID.log.tgz' % job.outputdata.datasetname
        flog.type = 'log'
        flog.dataset           = job.outputdata.datasetname
        flog.destinationDBlock = job.outputdata.datasetname
        flog.destinationSE     = job.backend.site
        jspec.addFile(flog)

#       job parameters
        param = ''

        # source URL
        matchURL = re.search("(http.*://[^/]+)/",Client.baseURLCSRVSSL)
        srcURL = ""
        if matchURL != None:
            srcURL = matchURL.group(1)
            param += " --sourceURL %s " % srcURL

        param += '-r "%s" ' % self.rundirectory

        exe_name = job.application.exe
        if job.backend.bexec == '':
            if hasattr(job.application.exe, "name"):
                exe_name = os.path.basename(job.application.exe.name)

            # set jobO parameter
            if job.application.args:
                param += ' -j "" -p "%s %s" '%(exe_name,urllib.quote(" ".join(job.application.args)))
            else:
                param += ' -j "" -p "%s" '%exe_name
            if self.inputsandbox:
                param += ' -a %s '%self.inputsandbox

        else:
            param += '-l %s ' % self.library
            param += '-j "" -p "%s %s" ' % ( exe_name,urllib.quote(" ".join(job.application.args)))

        if job.inputdata:
            param += '-i "%s" ' % job.inputdata.names

        # fill outfiles
        outfiles = {}
        for f in self.extOutFile:
            tarnum = 1
            if f.find('*') != -1:
            # archive *
                outfiles[f] = "outputbox%i.%s.%s.tar.gz" % (tarnum, job.getFQID('.'), time.strftime("%Y%m%d%H%M%S") )
                tarnum += 1
            else:
                outfiles[f] = "%s.%s.%s" %(f, job.getFQID('.'), time.strftime("%Y%m%d%H%M%S"))

            fout = FileSpec()
            fout.lfn = outfiles[f]
            fout.type = 'output'
            fout.dataset           = job.outputdata.datasetname
            fout.destinationDBlock = job.outputdata.datasetname
            fout.destinationSE     = job.backend.site
            jspec.addFile(fout)

        param += '-o "%s" ' % (outfiles) # must be double quotes, because python prints strings in 'single quotes' 

        for file in jspec.Files:
            if file.type in [ 'output', 'log'] and configPanda['chirpconfig']:
                file.dispatchDBlockToken = configPanda['chirpconfig']
                logger.debug('chirp file %s',file)

        jspec.jobParameters = param
        
        return jspec
Exemplo n.º 21
0
def send_job(jobid, siteid):
    _logger.debug('Jobid: ' + str(jobid))

    site = sites_.get(siteid)

    job = jobs_.get(int(jobid))
    cont = job.container
    files_catalog = cont.files

    fscope = getScope(job.owner.username)
    datasetName = '{}:{}'.format(fscope, cont.guid)

    distributive = job.distr.name
    release = job.distr.release

    # Prepare runScript
    parameters = job.distr.command
    parameters = parameters.replace("$COMMAND$", job.params)
    parameters = parameters.replace("$USERNAME$", job.owner.username)
    parameters = parameters.replace("$WORKINGGROUP$", job.owner.working_group)

    # Prepare metadata
    metadata = dict(user=job.owner.username)

    # Prepare PanDA Object
    pandajob = JobSpec()
    pandajob.jobDefinitionID = int(time.time()) % 10000
    pandajob.jobName = cont.guid
    pandajob.transformation = client_config.DEFAULT_TRF
    pandajob.destinationDBlock = datasetName
    pandajob.destinationSE = site.se
    pandajob.currentPriority = 1000
    pandajob.prodSourceLabel = 'user'
    pandajob.computingSite = site.ce
    pandajob.cloud = 'RU'
    pandajob.VO = 'atlas'
    pandajob.prodDBlock = "%s:%s" % (fscope, pandajob.jobName)
    pandajob.coreCount = job.corecount
    pandajob.metadata = json.dumps(metadata)
    #pandajob.workingGroup = job.owner.working_group

    if site.encode_commands:
        # It requires script wrapper on cluster side
        pandajob.jobParameters = '%s %s %s "%s"' % (cont.guid, release,
                                                    distributive, parameters)
    else:
        pandajob.jobParameters = parameters

    has_input = False
    for fcc in files_catalog:
        if fcc.type == 'input':
            f = fcc.file
            guid = f.guid
            fileIT = FileSpec()
            fileIT.lfn = f.lfn
            fileIT.dataset = pandajob.prodDBlock
            fileIT.prodDBlock = pandajob.prodDBlock
            fileIT.type = 'input'
            fileIT.scope = fscope
            fileIT.status = 'ready'
            fileIT.GUID = guid
            pandajob.addFile(fileIT)

            has_input = True
        if fcc.type == 'output':
            f = fcc.file
            fileOT = FileSpec()
            fileOT.lfn = f.lfn
            fileOT.destinationDBlock = pandajob.prodDBlock
            fileOT.destinationSE = pandajob.destinationSE
            fileOT.dataset = pandajob.prodDBlock
            fileOT.type = 'output'
            fileOT.scope = fscope
            fileOT.GUID = f.guid
            pandajob.addFile(fileOT)

            # Save replica meta
            fc.new_replica(f, site)

    if not has_input:
        # Add fake input
        fileIT = FileSpec()
        fileIT.lfn = "fake.input"
        fileIT.dataset = pandajob.prodDBlock
        fileIT.prodDBlock = pandajob.prodDBlock
        fileIT.type = 'input'
        fileIT.scope = fscope
        fileIT.status = 'ready'
        fileIT.GUID = "fake.guid"
        pandajob.addFile(fileIT)

    # Prepare lof file
    fileOL = FileSpec()
    fileOL.lfn = "%s.log.tgz" % pandajob.jobName
    fileOL.destinationDBlock = pandajob.destinationDBlock
    fileOL.destinationSE = pandajob.destinationSE
    fileOL.dataset = '{}:logs'.format(fscope)
    fileOL.type = 'log'
    fileOL.scope = 'panda'
    pandajob.addFile(fileOL)

    # Save log meta
    log = File()
    log.scope = fscope
    log.lfn = fileOL.lfn
    log.guid = getGUID(log.scope, log.lfn)
    log.type = 'log'
    log.status = 'defined'
    files_.save(log)

    # Save replica meta
    fc.new_replica(log, site)

    # Register file in container
    fc.reg_file_in_cont(log, cont, 'log')

    # Submit job
    o = submitJobs([pandajob])
    x = o[0]

    try:
        #update PandaID
        PandaID = int(x[0])
        job.pandaid = PandaID
        job.ce = site.ce
    except:
        job.status = 'submit_error'
    jobs_.save(job)

    return 0
Exemplo n.º 22
0
jobList = []

for i in range(1):
    job = JobSpec()
    job.jobDefinitionID   = int(time.time()) % 10000
    job.jobName           = "%s_%d" % (commands.getoutput('uuidgen'),i)
#    job.AtlasRelease      = 'Atlas-12.0.6'
#    job.homepackage       = 'AtlasProduction/12.0.6.5'
    job.AtlasRelease      = 'Atlas-12.0.7'
    job.homepackage       = 'AtlasProduction/12.0.7.1'

    job.transformation    = 'csc_evgen_trf.py'
    job.destinationDBlock = datasetName
#    job.destinationSE     = destName
#    job.cloud             = 'CA'
    job.cloud             = cloud
    job.taskID = taskid
    job.currentPriority   = 1000
    job.prodSourceLabel   = 'test'
#    job.prodSourceLabel   = 'cloudtest'
    job.computingSite     = site
    
    file = FileSpec()
    file.lfn = "%s.evgen.pool.root" % job.jobName
    file.destinationDBlock = job.destinationDBlock
    file.destinationSE     = job.destinationSE
    file.dataset           = job.destinationDBlock
    file.type = 'output'
    job.addFile(file)
    
    fileOL = FileSpec()
Exemplo n.º 23
0
    def prepare(self, app, appconfig, appmasterconfig, jobmasterconfig):
        '''prepare the subjob specific configuration'''

        # PandaTools
        from pandatools import Client
        from pandatools import AthenaUtils
        from taskbuffer.JobSpec import JobSpec
        from taskbuffer.FileSpec import FileSpec

        job = app._getParent()
        logger.debug('AthenaMCPandaRTHandler prepare called for %s',
                     job.getFQID('.'))

        try:
            assert self.outsite
        except:
            logger.error("outsite not set. Aborting")
            raise Exception()

        job.backend.site = self.outsite
        job.backend.actualCE = self.outsite
        cloud = job._getRoot().backend.requirements.cloud
        job.backend.requirements.cloud = cloud

        # now just filling the job from AthenaMC data

        jspec = JobSpec()
        jspec.jobDefinitionID = job._getRoot().id
        jspec.jobName = commands.getoutput('uuidgen 2> /dev/null')
        jspec.AtlasRelease = 'Atlas-%s' % app.atlas_rel

        if app.transform_archive:
            jspec.homepackage = 'AnalysisTransforms' + app.transform_archive
        elif app.prod_release:
            jspec.homepackage = 'AnalysisTransforms-AtlasProduction_' + str(
                app.prod_release)
        jspec.transformation = '%s/runAthena-00-00-11' % Client.baseURLSUB

        #---->????  prodDBlock and destinationDBlock when facing several input / output datasets?

        jspec.prodDBlock = 'NULL'
        if job.inputdata and len(
                app.inputfiles) > 0 and app.inputfiles[0] in app.dsetmap:
            jspec.prodDBlock = app.dsetmap[app.inputfiles[0]]

        # How to specify jspec.destinationDBlock  when more than one type of output is available? Panda prod jobs seem to specify only the last output dataset
        outdset = ""
        for type in ["EVNT", "RDO", "HITS", "AOD", "ESD", "NTUP"]:
            if type in app.outputpaths.keys():
                outdset = string.replace(app.outputpaths[type], "/", ".")
                outdset = outdset[1:-1]
                break
        if not outdset:
            try:
                assert len(app.outputpaths.keys()) > 0
            except:
                logger.error(
                    "app.outputpaths is empty: check your output datasets")
                raise
            type = app.outputpaths.keys()[0]
            outdset = string.replace(app.outputpaths[type], "/", ".")
            outdset = outdset[1:-1]

        jspec.destinationDBlock = outdset
        jspec.destinationSE = self.outsite
        jspec.prodSourceLabel = 'user'
        jspec.assignedPriority = 1000
        jspec.cloud = cloud
        # memory
        if job.backend.requirements.memory != -1:
            jspec.minRamCount = job.backend.requirements.memory
        jspec.computingSite = self.outsite
        jspec.cmtConfig = AthenaUtils.getCmtConfig(athenaVer=app.atlas_rel)
        #       library (source files)
        flib = FileSpec()
        flib.lfn = self.library
        #        flib.GUID           =
        flib.type = 'input'
        #        flib.status         =
        flib.dataset = self.libDataset
        flib.dispatchDBlock = self.libDataset
        jspec.addFile(flib)

        #       input files FIXME: many more input types
        for lfn in app.inputfiles:
            useguid = app.turls[lfn].replace("guid:", "")
            finp = FileSpec()
            finp.lfn = lfn
            finp.GUID = useguid
            finp.dataset = app.dsetmap[lfn]
            finp.prodDBlock = app.dsetmap[lfn]
            finp.prodDBlockToken = 'local'
            finp.dispatchDBlock = app.dsetmap[lfn]
            finp.type = 'input'
            finp.status = 'ready'
            jspec.addFile(finp)
        # add dbfiles if any:
        for lfn in app.dbfiles:
            useguid = app.dbturls[lfn].replace("guid:", "")
            finp = FileSpec()
            finp.lfn = lfn
            finp.GUID = useguid
            finp.dataset = app.dsetmap[lfn]
            finp.prodDBlock = app.dsetmap[lfn]
            finp.prodDBlockToken = 'local'
            finp.dispatchDBlock = app.dsetmap[lfn]
            finp.type = 'input'
            finp.status = 'ready'
            jspec.addFile(finp)
        # then minbias files
        for lfn in app.mbfiles:
            useguid = app.minbias_turls[lfn].replace("guid:", "")
            finp = FileSpec()
            finp.lfn = lfn
            finp.GUID = useguid
            finp.dataset = app.dsetmap[lfn]
            finp.prodDBlock = app.dsetmap[lfn]
            finp.prodDBlockToken = 'local'
            finp.dispatchDBlock = app.dsetmap[lfn]
            finp.type = 'input'
            finp.status = 'ready'
            jspec.addFile(finp)
        # then cavern files
        for lfn in app.cavernfiles:
            useguid = app.cavern_turls[lfn].replace("guid:", "")
            finp = FileSpec()
            finp.lfn = lfn
            finp.GUID = useguid
            finp.dataset = app.dsetmap[lfn]
            finp.prodDBlock = app.dsetmap[lfn]
            finp.prodDBlockToken = 'local'
            finp.dispatchDBlock = app.dsetmap[lfn]
            finp.type = 'input'
            finp.status = 'ready'
            jspec.addFile(finp)


#       output files( this includes the logfiles)
# Output files
        jidtag = ""
        job = app._getParent()  # Returns job or subjob object
        if job._getRoot().subjobs:
            jidtag = job._getRoot().id
        else:
            jidtag = "%d" % job.id
        outfiles = app.subjobsOutfiles[job.id]
        pandaOutfiles = {}
        for type in outfiles.keys():
            pandaOutfiles[type] = outfiles[type] + "." + str(jidtag)
            if type == "LOG":
                pandaOutfiles[type] += ".tgz"
        #print pandaOutfiles

        for outtype in pandaOutfiles.keys():
            fout = FileSpec()
            dset = string.replace(app.outputpaths[outtype], "/", ".")
            dset = dset[1:-1]
            fout.dataset = dset
            fout.lfn = pandaOutfiles[outtype]
            fout.type = 'output'
            #            fout.destinationDBlock = jspec.destinationDBlock
            fout.destinationDBlock = fout.dataset
            fout.destinationSE = jspec.destinationSE
            if outtype == 'LOG':
                fout.type = 'log'
                fout.destinationDBlock = fout.dataset
                fout.destinationSE = job.backend.site
            jspec.addFile(fout)

        #       job parameters
        param = '-l %s ' % self.library  # user tarball.
        # use corruption checker
        if job.backend.requirements.corCheck:
            param += '--corCheck '
        # disable to skip missing files
        if job.backend.requirements.notSkipMissing:
            param += '--notSkipMissing '

        # transform parameters
        # need to update arglist with final output file name...
        newArgs = []
        if app.mode == "evgen":
            app.args[3] = app.args[3] + " -t "
            if app.verbosity:
                app.args[3] = app.args[3] + " -l %s " % app.verbosity

        for arg in app.args[3:]:
            for type in outfiles.keys():
                if arg.find(outfiles[type]) > -1:
                    arg = arg.replace(outfiles[type], pandaOutfiles[type])

            newArgs.append(arg)
        arglist = string.join(newArgs, " ")
        #        print "Arglist:",arglist

        param += ' -r ./ '
        param += ' -j "%s"' % urllib.quote(arglist)

        allinfiles = app.inputfiles + app.dbfiles
        # Input files.
        param += ' -i "%s" ' % allinfiles
        if len(app.mbfiles) > 0:
            param += ' -m "%s" ' % app.mbfiles
        if len(app.cavernfiles) > 0:
            param += ' -n "%s" ' % app.cavernfiles
        #        param += '-m "[]" ' #%minList FIXME
        #        param += '-n "[]" ' #%cavList FIXME

        del pandaOutfiles[
            "LOG"]  # logfiles do not appear in IROOT block, and this one is not needed anymore...
        param += ' -o "{\'IROOT\':%s }"' % str(pandaOutfiles.items())

        # source URL
        matchURL = re.search("(http.*://[^/]+)/", Client.baseURLSSL)
        if matchURL != None:
            param += " --sourceURL %s " % matchURL.group(1)
        param += " --trf"

        jspec.jobParameters = param
        jspec.metadata = "--trf \"%s\"" % arglist

        #print "SUBJOB DETAILS:",jspec.values()
        if app.dryrun:
            print "job.application.dryrun activated, printing out job parameters"
            print jspec.values()
            return

        return jspec