def build(self, p):
i = 0
tt = ticktock("builder")
tt.tick("building")
for line in open(p):
sline = line[:-1].split("\t")
fb_id = sline[0]
triplecount = int(sline[1]) + int(sline[2])
name = self.processor.processline(sline[3])
type_id = sline[4]
type_id = type_id if type_id != "<UNK>" else None
type_name = " ".join(tokenize(sline[5]))
type_name = type_name if type_name != " ".join(
tokenize("<UNK>")) else None
if name not in self.indexdict:
self.indexdict[name] = []
self.indexdict[name].append({
"fb_id": fb_id,
"triplecount": triplecount,
"type_id": type_id,
"type_name": type_name
})
i += 1
if i % 1000 == 0:
tt.live("{}k".format(i // 1000))
tt.tock("built")
def getdata(p, worddic, chardic, entdic, reldic, maxc=np.infty, maxchar=30):
data = []
gold = []
maxlen = 0
maxwordlen = 0
c = 0
for line in open(p):
q, a = (line[:-1] if line[-1] == "\n" else line).split("\t")
s, p = a.split()
words = tokenize(q)
maxlen = max(maxlen, len(words))
for word in words:
maxwordlen = max(maxwordlen, len(word))
if word not in worddic:
worddic[word] = len(worddic)
if s not in entdic:
entdic[s] = len(entdic)
if p not in reldic:
reldic[p] = len(reldic)
data.append(words)
gold.append([entdic[s], reldic[p]])
c += 1
if c > maxc:
break
print maxwordlen
maxchar = min(maxchar, maxwordlen)
wordmat = np.zeros((c, maxlen)).astype("int32") - 1
charten = np.zeros((c, maxlen, maxchar)).astype("int32") - 1
goldmat = np.zeros((c, 2)).astype("int32")
i = 0
for sent in data:
j = 0
for word in sent:
if len(word) > maxchar:
print word
wordmat[i, j] = worddic[word]
chars = map(ord, word)
charten[i, j, :min(len(chars), maxchar)] = chars[:min(len(chars), maxchar)]
j += 1
i += 1
i = 0
for x in gold:
goldmat[i, :] = x
i += 1
# making chardic and transforming through chardic
thischardic = dict(map(lambda (x,y): (ord(x), y), chardic.items()))
nextid = 0
while nextid in thischardic.values():
nextid += 1
uniquechars = np.unique(charten)
for uniquechar in list(uniquechars):
if not uniquechar in thischardic and uniquechar >= 0:
thischardic[uniquechar] = nextid
while nextid in thischardic.values():
nextid += 1
chardic.update(dict(map(lambda (x, y): (chr(x), y), thischardic.items())))
print len(chardic), chardic
charten = np.vectorize(lambda x: thischardic[x] if x >= 0 else x)(charten)
datamat = np.concatenate([wordmat.reshape(wordmat.shape + (1,)), charten], axis=2)
return datamat, goldmat
def getdata(p, maxc=np.infty):
data = []
gold = []
maxlen = 0
c = 0
for line in open(p):
question, answer = line[:-1].split("\t")
subject, predicate = answer.split(" ")
question_words = tokenize(question)
addwords(*question_words)
maxlen = max(maxlen, len(question_words))
if subject not in entdic:
add_entity_wo_label(subject)
if predicate not in reldic:
raise Exception("predicate should be there")
wordidx = [worddic[x] if x in worddic else worddic["<RARE>"] for x in question_words]
data.append(wordidx)
gold.append([entdic[subject], reldic[predicate]])
c += 1
if c % 100 == 0:
print c
if c > maxc:
break
datamat = np.zeros((c, maxlen)).astype("int32") - 1
goldmat = np.zeros((c, 2)).astype("int32")
i = 0
for x in data:
datamat[i, :len(x)] = x
i += 1
i = 0
for x in gold:
goldmat[i, :] = x
i += 1
return datamat, goldmat
def getdata(p, maxc=np.infty):
data = []
gold = []
maxlen = 0
c = 0
for line in open(p):
q, a = (line[:-1] if line[-1] == "\n" else line).split("\t")
s, p = a.split()
chars = " ".join(tokenize(q))
updatechardic(*set(chars))
maxlen = max(maxlen, len(chars))
if s not in entdic:
updateentk(s)
if p not in reldic:
raise Exception("impossibru!")
charidx = map(lambda x: chardic[x] if x in chardic else chardic[" "], chars)
data.append(charidx)
gold.append([entdic[s], reldic[p]])
c += 1
if c % 100 == 0:
print c
if c > maxc:
break
datamat = np.zeros((c, maxlen)).astype("int32") - 1
goldmat = np.zeros((c, 2)).astype("int32")
i = 0
for x in data:
datamat[i, :len(x)] = x
i += 1
i = 0
for x in gold:
goldmat[i, :] = x
i += 1
return datamat, goldmat
def stemmedprocessline(self, x):
x = x.replace("'s", "")
x = x.replace("' s", "")
x = x.replace("'", "")
tokens = tokenize(x)
#print tokens
stokens = [self.stemmer.stem(token) for token in tokens]
return " ".join(stokens)
def run(labelp="labels.map", datap="datamat.word.pkl"):
labeldic = loadlabels(labelp)
glove = Glove(50)
print "the" in glove
len(labeldic)
x = pickle.load(open(datap))
print len(x["train"][0])
# get entities without labels
allentids = sorted(x["entdic"].items(), key=lambda
(a, b): b)[:x["numents"]]
print allentids[:20]
entidsnotinlabeldic = set(map(lambda (a, b): a,
allentids)).difference(set(labeldic.keys()))
print len(entidsnotinlabeldic), list(entidsnotinlabeldic)[:20]
wd = {v: k for k, v in x["worddic"].items()}
ed = {v: k for k, v in x["entdic"].items()}
alltrainents = set(x["train"][1][:, 0])
allvalidents = set(x["valid"][1][:, 0])
alltestents = set(x["test"][1][:, 0])
print "%d/%d (%.2f%%) test set entities not in training " % (
len(alltestents.difference(alltrainents)), len(alltestents),
len(alltestents.difference(alltrainents)) * 100. / len(alltestents))
print "%d/%d (%.2f%%) validation set entities not in training " % (
len(allvalidents.difference(alltrainents)), len(allvalidents),
len(allvalidents.difference(alltrainents)) * 100. / len(allvalidents))
#print len(allvalidents.difference(alltrainents))
# gather all words in entity labels
labelwords = {}
labelwordsnotinglove = set()
for label in labeldic.values():
for labelw in tokenize(label):
if labelw not in labelwords:
labelwords[labelw] = 0
labelwords[labelw] += 1
if labelw not in glove:
labelwordsnotinglove.add(labelw)
print "%d unique words in labels" % len(labelwords)
print "%d words not in glove" % len(labelwordsnotinglove)
for split in ["train", "test", "valid"]:
#print "SPLIT %s" % split
split = x[split]
#print len(split[0])
wocount = 0
for i in range(len(split[0])):
#print ed[split[1][i][0]], ed[split[1][i][0]] in entidsnotinlabeldic
#break
if ed[split[1][i][0]] in entidsnotinlabeldic:
#print " ".join(map(lambda x: wd[x] if x in wd else "", list(split[0][i]))), ed[split[1][i][0]]
wocount += 1
else:
pass
def run(labelp="labels.map", datap="datamat.word.pkl"):
labeldic = loadlabels(labelp)
glove = Glove(50)
print "the" in glove
len(labeldic)
x = pickle.load(open(datap))
print len(x["train"][0])
# get entities without labels
allentids = sorted(x["entdic"].items(), key=lambda (a, b): b)[:x["numents"]]
print allentids[:20]
entidsnotinlabeldic = set(map(lambda (a, b): a, allentids)).difference(set(labeldic.keys()))
print len(entidsnotinlabeldic), list(entidsnotinlabeldic)[:20]
wd = {v: k for k, v in x["worddic"].items()}
ed = {v: k for k, v in x["entdic"].items()}
alltrainents = set(x["train"][1][:, 0])
allvalidents = set(x["valid"][1][:, 0])
alltestents = set(x["test"][1][:, 0])
print "%d/%d (%.2f%%) test set entities not in training " % (len(alltestents.difference(alltrainents)), len(alltestents), len(alltestents.difference(alltrainents))*100./len(alltestents))
print "%d/%d (%.2f%%) validation set entities not in training " % (
len(allvalidents.difference(alltrainents)), len(allvalidents),
len(allvalidents.difference(alltrainents)) * 100. / len(allvalidents))
#print len(allvalidents.difference(alltrainents))
# gather all words in entity labels
labelwords = {}
labelwordsnotinglove = set()
for label in labeldic.values():
for labelw in tokenize(label):
if labelw not in labelwords:
labelwords[labelw] = 0
labelwords[labelw] += 1
if labelw not in glove:
labelwordsnotinglove.add(labelw)
print "%d unique words in labels" % len(labelwords)
print "%d words not in glove" % len(labelwordsnotinglove)
for split in ["train", "test", "valid"]:
#print "SPLIT %s" % split
split = x[split]
#print len(split[0])
wocount = 0
for i in range(len(split[0])):
#print ed[split[1][i][0]], ed[split[1][i][0]] in entidsnotinlabeldic
#break
if ed[split[1][i][0]] in entidsnotinlabeldic:
#print " ".join(map(lambda x: wd[x] if x in wd else "", list(split[0][i]))), ed[split[1][i][0]]
wocount += 1
else:
pass
def getdata(p, chardic, entdic, reldic, maxc=np.infty):
data = []
gold = []
maxlen = 0
c = 0
for line in open(p):
q, a = (line[:-1] if line[-1] == "\n" else line).split("\t")
s, p = a.split()
words = tokenize(q)
q = " ".join(words)
maxlen = max(maxlen, len(q))
chars = map(ord, q)
if len(set(chars).intersection({123})) > 0:
pass #print line, q
if s not in entdic:
entdic[s] = len(entdic)
if p not in reldic:
reldic[p] = len(reldic)
data.append(chars)
gold.append([entdic[s], reldic[p]])
c += 1
if c > maxc:
break
datamat = np.zeros((c, maxlen)).astype("int32") - 1
goldmat = np.zeros((c, 2)).astype("int32")
i = 0
for x in data:
datamat[i, :len(x)] = x
i += 1
i = 0
for x in gold:
goldmat[i, :] = x
i += 1
# making chardic and transforming through chardic
thischardic = dict(map(lambda (x,y): (ord(x), y), chardic.items()))
nextid = 0
while nextid in thischardic.values():
nextid += 1
uniquechars = np.unique(datamat)
for uniquechar in list(uniquechars):
if not uniquechar in thischardic and uniquechar >= 0:
thischardic[uniquechar] = nextid
while nextid in thischardic.values():
nextid += 1
chardic.update(dict(map(lambda (x, y): (chr(x), y), thischardic.items())))
print len(chardic), chardic
datamat = np.vectorize(lambda x: thischardic[x] if x >= 0 else x)(datamat)
return datamat, goldmat
def getdata(p, chardic, entdic, reldic, maxc=np.infty):
data = []
gold = []
maxlen = 0
c = 0
for line in open(p):
q, a = (line[:-1] if line[-1] == "\n" else line).split("\t")
s, p = a.split()
words = tokenize(q)
q = " ".join(words)
maxlen = max(maxlen, len(q))
chars = map(ord, q)
if len(set(chars).intersection({123})) > 0:
pass #print line, q
if s not in entdic:
entdic[s] = len(entdic)
if p not in reldic:
reldic[p] = len(reldic)
data.append(chars)
gold.append([entdic[s], reldic[p]])
c += 1
if c > maxc:
break
datamat = np.zeros((c, maxlen)).astype("int32") - 1
goldmat = np.zeros((c, 2)).astype("int32")
i = 0
for x in data:
datamat[i, :len(x)] = x
i += 1
i = 0
for x in gold:
goldmat[i, :] = x
i += 1
# making chardic and transforming through chardic
thischardic = dict(map(lambda (x, y): (ord(x), y), chardic.items()))
nextid = 0
while nextid in thischardic.values():
nextid += 1
uniquechars = np.unique(datamat)
for uniquechar in list(uniquechars):
if not uniquechar in thischardic and uniquechar >= 0:
thischardic[uniquechar] = nextid
while nextid in thischardic.values():
nextid += 1
chardic.update(dict(map(lambda (x, y): (chr(x), y), thischardic.items())))
print len(chardic), chardic
datamat = np.vectorize(lambda x: thischardic[x] if x >= 0 else x)(datamat)
return datamat, goldmat
def getmemdata(reldic,
worddic,
chardic,
maxchar=30): # updates worddic with words found in relation
rels = sorted(reldic.items(), key=lambda (x, y): y)
rels = map(lambda (x, y): (tokenize(x), y), rels)
allrelwords = set()
allrelchars = set()
maxlen = 0
maxwordlen = 0
prevc = -1
for rel, c in rels:
assert (c - 1 == prevc)
prevc = c
maxlen = max(maxlen, len(rel))
for relw in rel:
allrelwords.add(relw)
maxwordlen = max(maxwordlen, len(relw))
for relwchar in relw:
allrelchars.add(relwchar)
maxchar = min(maxchar, maxwordlen)
relwordsnotinworddic = allrelwords.difference(set(worddic.keys()))
charsnotinchardic = allrelchars.difference(set(chardic.keys()))
for rwniw in relwordsnotinworddic:
worddic[rwniw] = len(worddic)
nextid = 0
for cnic in charsnotinchardic:
while nextid in chardic.values():
nextid += 1
chardic[cnic] = nextid
wordmat = np.zeros((len(rels), maxlen)).astype("int32") - 1
charten = np.zeros((len(rels), maxlen, maxchar)).astype("int32") - 1
for rel, c in rels:
wordmat[c, :len(rel)] = map(lambda x: worddic[x], rel)
j = 0
for relw in rel:
charten[c, j, :min(len(relw), maxchar)] = \
map(lambda x: chardic[x], relw[:min(len(relw), maxchar)])
j += 1
datamat = np.concatenate([wordmat.reshape(wordmat.shape + (1, )), charten],
axis=2)
return datamat
def getmemdata(reldic, worddic, chardic, maxchar=30): # updates worddic with words found in relation
rels = sorted(reldic.items(), key=lambda (x, y): y)
rels = map(lambda (x, y): (tokenize(x), y), rels)
allrelwords = set()
allrelchars = set()
maxlen = 0
maxwordlen = 0
prevc = -1
for rel, c in rels:
assert(c-1 == prevc)
prevc = c
maxlen = max(maxlen, len(rel))
for relw in rel:
allrelwords.add(relw)
maxwordlen = max(maxwordlen, len(relw))
for relwchar in relw:
allrelchars.add(relwchar)
maxchar = min(maxchar, maxwordlen)
relwordsnotinworddic = allrelwords.difference(set(worddic.keys()))
charsnotinchardic = allrelchars.difference(set(chardic.keys()))
for rwniw in relwordsnotinworddic:
worddic[rwniw] = len(worddic)
nextid = 0
for cnic in charsnotinchardic:
while nextid in chardic.values():
nextid += 1
chardic[cnic] = nextid
wordmat = np.zeros((len(rels), maxlen)).astype("int32") - 1
charten = np.zeros((len(rels), maxlen, maxchar)).astype("int32") - 1
for rel, c in rels:
wordmat[c, :len(rel)] = map(lambda x: worddic[x], rel)
j = 0
for relw in rel:
charten[c, j, :min(len(relw), maxchar)] = \
map(lambda x: chardic[x], relw[:min(len(relw), maxchar)])
j += 1
datamat = np.concatenate([wordmat.reshape(wordmat.shape + (1,)),
charten], axis=2)
return datamat
def getdata(p, maxc=np.infty):
data = []
gold = []
maxlen = 0
c = 0
for line in open(p):
q, a = (line[:-1] if line[-1] == "\n" else line).split("\t")
s, p = a.split()
words = tokenize(q)
updatedics(*words)
maxlen = max(maxlen, len(words))
if s not in entdic:
updateentk(s)
if p not in reldic:
raise Exception("impossibru!")
wordidx = map(lambda x: worddic[x] if x in worddic else worddic["<RARE>"], words)
charsidx = [[chardic[x] if x in chardic else chardic[" "]
for x in word] for word in words]
data.append((wordidx, charsidx))
gold.append([entdic[s], reldic[p]])
c += 1
if c % 100 == 0:
print c
if c > maxc:
break
datamat = np.zeros((c, maxlen, maxnamewordlen+1)).astype("int32") - 1
goldmat = np.zeros((c, 2)).astype("int32")
i = 0
for x, y in data:
datamat[i, :len(x), 0] = x
j = 0
for ye in y:
xec =
datamat[i, j, 1:maxnamewordlen+1]
i += 1
i = 0
for x in gold:
goldmat[i, :] = x
i += 1
return datamat, goldmat
def getcharmemdata(reldic, chardic):
rels = sorted(reldic.items(), key=lambda (x, y): y)
rels = map(lambda (x, y): (" ".join(tokenize(x)), y), rels)
maxlen = 0
prevc = -1
allrelchars = set()
for rel, c in rels:
assert(c-1 == prevc)
prevc = c
maxlen = max(maxlen, len(rel))
for relchar in rel:
allrelchars.add(relchar)
charsnotinchardic = allrelchars.difference(set(chardic.keys()))
nextid = 0
for cnic in charsnotinchardic:
while nextid in chardic.values():
nextid += 1
chardic[cnic] = nextid
retmat = np.zeros((len(rels), maxlen)).astype("int32") - 1
for rel, k in rels:
rel = [chardic[c] for c in rel]
retmat[k, :len(rel)] = rel
return retmat
def readdataset(p, wdic, maxlen=100):
dataret = []
goldret = []
toolong = 0
realmaxlen = 0
with open(p) as f:
data = csv.reader(f, delimiter=",")
for row in data:
rowelems = tokenize(row[2])
realmaxlen = max(realmaxlen, len(rowelems))
if len(rowelems) > maxlen:
toolong += 1
for rowelem in set(rowelems):
if rowelem not in wdic:
wdic[rowelem] = len(wdic)
dataret.append([wdic[x] for x in rowelems])
goldret.append(row[0])
print "{} comments were too long".format(toolong)
maxlen = min(maxlen, realmaxlen)
datamat = np.ones((len(dataret) - 1, maxlen)).astype("int32") * masksym
for i in range(1, len(dataret)):
datamat[i - 1, :min(len(dataret[i]), maxlen)] = dataret[i][:min(len(dataret[i]), maxlen)]
return datamat, np.asarray(goldret[1:], dtype="int32"), wdic
def run(trainp="../fb_train.tsv",
testp="../fb_test.tsv",
validp="../fb_valid.tsv",
outp="datamat.word.fb2m.pkl",
entnames="../subjnames_fb2m.map",
rellist="../predicates_fb2m.list",
maxnamelen=30):
# worddic
worddic = {"<RARE>": 0}
wordcounts = {"<RARE>": 0}
def addwords(*words): # adds a word to the worddic
for word in words:
if word not in worddic:
worddic[word] = len(worddic)
if word not in wordcounts:
wordcounts[word] = 0
wordcounts[word] += 1
# entity names
entdic = {}
entmatr = []
c = 0 # counter
maxlen = 0
for line in open(entnames):
entity_id, entity_label = line[:-1].split("\t")
entity_label_tokens = tokenize(entity_label)
entity_label_tokens = entity_label_tokens[:min(len(entity_label_tokens), maxnamelen)] # ensure taken entity label has no more than maximum allowed number of tokens
maxlen = max(maxlen, len(entity_label_tokens))
addwords(*entity_label_tokens)
entmatr.append(entity_label_tokens)
if entity_id not in entdic:
entdic[entity_id] = len(entdic)
if c % 1e3 == 0:
print("{}k".format(c/1e3))
c += 1
entswonames = set()
def add_entity_wo_label(entid):
assert(entid not in entdic)
entdic[entid] = len(entdic)
entswonames.add(entid)
entmatr.append(["<RARE>"])
# relation uri's
reldic = {}
relmatr = []
for line in open(rellist):
relation_uri = line[:-1]
relation_uri_tokens = reluri_tokenize(relation_uri)
relation_uri_tokens = relation_uri_tokens[:min(len(relation_uri_tokens), maxnamelen)] # ensure max len
maxlen = max(maxlen, len(relation_uri_tokens))
addwords(*relation_uri_tokens)
relmatr.append(relation_uri_tokens)
if relation_uri not in reldic:
reldic[relation_uri] = len(reldic)
maxnamelen = min(maxlen, maxnamelen)
print len(entdic), len(reldic), len(worddic), maxnamelen
def getdata(p, maxc=np.infty):
data = []
gold = []
maxlen = 0
c = 0
for line in open(p):
question, answer = line[:-1].split("\t")
subject, predicate = answer.split(" ")
question_words = tokenize(question)
addwords(*question_words)
maxlen = max(maxlen, len(question_words))
if subject not in entdic:
add_entity_wo_label(subject)
if predicate not in reldic:
raise Exception("predicate should be there")
wordidx = [worddic[x] if x in worddic else worddic["<RARE>"] for x in question_words]
data.append(wordidx)
gold.append([entdic[subject], reldic[predicate]])
c += 1
if c % 100 == 0:
print c
if c > maxc:
break
datamat = np.zeros((c, maxlen)).astype("int32") - 1
goldmat = np.zeros((c, 2)).astype("int32")
i = 0
for x in data:
datamat[i, :len(x)] = x
i += 1
i = 0
for x in gold:
goldmat[i, :] = x
i += 1
return datamat, goldmat
traindata = getdata(trainp)
validdata = getdata(validp)
testdata = getdata(testp)
# build ent mat
entmat = np.zeros((len(entmatr), maxnamelen), dtype="int32") - 1
for i in range(len(entmatr)):
x = entmatr[i]
entmat[i, :len(x)] = [worddic[a] for a in x]
# build rel mat
relmat = np.zeros((len(relmatr), maxnamelen), dtype="int32") - 1
for i in range(len(relmatr)):
x = relmatr[i]
relmat[i, :len(x)] = [worddic[a] for a in x]
# package
entmat = np.concatenate([entmat, relmat], axis=0)
numents = len(entdic)
traindata[1][:, 1] += numents
validdata[1][:, 1] += numents
testdata[1][:, 1] += numents
entdic.update({k: v+numents for k, v in reldic.items()})
# save
acc = {
"train": traindata,
"valid": validdata,
"test": testdata,
"worddic": worddic,
"entdic": entdic,
"entmat": entmat,
"numents": numents,
"wordcounts": wordcounts,
}
print("{} entities without names in datasets".format(len(entswonames)))
pickle.dump(acc, open(outp, "w"))
class SimpleQuestionsLabelIndex(object):
def __init__(self, host="drogon", index="simplequestions_labels"):
self.host = host
self.indexp = index
def index(self, labelp="labels.map"):
es = elasticsearch.Elasticsearch(hosts=[self.host])
try:
es.indices.delete(index=self.indexp)
except Exception, e:
print "could not delete index %s" % self.indexp
es.indices.create(
index=self.indexp,
body={
"settings": {
"index": {
"analysis": {
"filter": {
"pstemmer": {
"type": "porter_stem",
"language": "_english_"
}
},
"char_filter": {
"punctfil": {
"type": "pattern_replace",
"pattern": "[\W]",
"replacement": ""
}
},
"analyzer": {
"myana": {
"tokenizer": "whitespace",
"filter": [
"lowercase",
"pstemmer",
]
#,"char_filter": ["punctfil"]
}
}
}
}
},
"mappings": {
"labelmap": {
"properties": {
"label": {
"type": "string",
"analyzer": "myana",
"fields": {
"len": {
"type": "token_count",
"store": "yes",
"analyzer": "myana"
}
}
}
}
}
}
})
i = 1
for line in open(labelp):
k, v = line[:-1].split("\t")
vt = tokenize(v)
es.index(index=self.indexp,
doc_type="labelmap",
id=i,
body={
"label": " ".join(vt),
"fbid": k
})
if i % 1000 == 0:
print i
i += 1
print "indexed labels"
def searchsentence(self, s, top=None, topsize=None, exact=True):
s = tokenize(s)
ngrams = self.getallngrams(s, topsize)
return self.searchallngrams(ngrams, top, exact=exact)
def __call__(self, x):
ret = tokenize(self.labelfy(x[0]))
ret = ret[: min(self.maxlen, len(ret))]
return ret, x[1]
def __call__(self, x):
ret = tokenize(self.labelfy(x[0]))
ret = ret[:min(self.maxlen, len(ret))]
return ret, x[1]
def run(trainp="fb_train.tsv",
testp="fb_test.tsv",
validp="fb_valid.tsv",
outp="datamat.char.mem.fb2m.pkl",
entnames="subjnames_fb2m.map",
rellist="rels_fb2m.list",
maxnamelen=100):
# worddic
chardic = {" ": 0}
def updatechardic(*chars):
for char in chars:
if char not in chardic:
chardic[char] = len(chardic)
# process entity names and relation list
entdic = {}
entmatr = []
entswonames = set()
c = 0
maxlen = 0
for line in open(entnames):
e, n = line.split("\t")
nt = " ".join(tokenize(n))
nt = nt[:min(len(nt), maxnamelen)]
maxlen = max(maxlen, len(nt))
updatechardic(*set(nt))
entmatr.append(nt)
if e not in entdic:
entdic[e] = len(entdic)
if c % 1e3 == 0:
print "%.0fk" % (c/1e3)
c += 1
def updateentk(*ents): #ents have not been seen during initial population ==> no titles
for ent in ents:
assert(ent not in entdic)
entdic[ent] = len(entdic)
entswonames.add(ent)
entmatr.append([" "])
reldic = {}
relmatr = []
for line in open(rellist):
r = line[:-1]
rt = " ".join(tokenize(r))
rt = rt[:min(len(rt), maxnamelen)]
maxlen = max(maxlen, len(rt))
updatechardic(*set(rt))
relmatr.append(rt)
r = "/" + r.replace(".", "/")
if r not in reldic:
reldic[r] = len(reldic)
maxnamelen = min(maxlen, maxnamelen)
print len(entdic), len(reldic), len(chardic), maxnamelen
# process data
def getdata(p, maxc=np.infty):
data = []
gold = []
maxlen = 0
c = 0
for line in open(p):
q, a = (line[:-1] if line[-1] == "\n" else line).split("\t")
s, p = a.split()
chars = " ".join(tokenize(q))
updatechardic(*set(chars))
maxlen = max(maxlen, len(chars))
if s not in entdic:
updateentk(s)
if p not in reldic:
raise Exception("impossibru!")
charidx = map(lambda x: chardic[x] if x in chardic else chardic[" "], chars)
data.append(charidx)
gold.append([entdic[s], reldic[p]])
c += 1
if c % 100 == 0:
print c
if c > maxc:
break
datamat = np.zeros((c, maxlen)).astype("int32") - 1
goldmat = np.zeros((c, 2)).astype("int32")
i = 0
for x in data:
datamat[i, :len(x)] = x
i += 1
i = 0
for x in gold:
goldmat[i, :] = x
i += 1
return datamat, goldmat
traindata = getdata(trainp)
validdata = getdata(validp)
testdata = getdata(testp)
# build ent mat
entmat = np.zeros((len(entmatr), maxnamelen), dtype="int32") - 1
for i in range(len(entmatr)):
x = entmatr[i]
entmat[i, :len(x)] = map(lambda a: chardic[a], x)
# build rel mat
relmat = np.zeros((len(relmatr), maxnamelen), dtype="int32") - 1
for i in range(len(relmatr)):
x = relmatr[i]
relmat[i, :len(x)] = map(lambda a: chardic[a], x)
# pre-package tests:
print entmat.shape[0], len(entdic)
assert(entmat.shape[0] == len(entdic))
# package
entmat = np.concatenate([entmat, relmat], axis=0)
numents = len(entdic)
traindata[1][:, 1] += numents
validdata[1][:, 1] += numents
testdata[1][:, 1] += numents
reldic = {k: v+numents for k, v in reldic.items()}
entdic.update(reldic)
# save
acc = {
"train": traindata,
"valid": validdata,
"test": testdata,
"chardic": chardic,
"entdic": entdic,
"entmat": entmat,
"numents": numents
}
print "%d entities without names in datasets" % len(entswonames)
pickle.dump(acc, open(outp, "w"))
def predict(self,
data,
entcans=None,
relsperent=None,
relcans=None,
multiprune=-1):
print multiprune
assert (relsperent is None or relcans is None)
assert (relsperent is not None or relcans is not None)
assert (entcans is not None)
self.encodequestions(data)
rankedsubjs = self.ranksubjects(entcans)
bestsubjs = [x[0][0] for x in rankedsubjs]
if relcans is not None:
rankedrels = self.rankrelations(relcans)
bestrels = [x[0][0] for x in rankedrels]
else:
if multiprune <= 0:
relcans = [
relsperent[bestsubj][0] if bestsubj in relsperent else []
for bestsubj in bestsubjs
]
rankedrels = self.rankrelations(relcans)
bestrels = [x[0][0] for x in rankedrels]
else:
print "multipruning !!!!!!!!!!!!!!!!!"
topk = multiprune # TOP K !!!!!!!!!!!!!!!!!!!!!!!!!!!!
# get relcans
relcans = []
for subjranking in rankedsubjs:
toplabel = None
relcanse = []
i = 0
for subj, score in subjranking:
subjlabel = " ".join(
tokenize(self.subjinfo[subj][0]) if subj in
self.subjinfo else [])
topcan = None
if toplabel is None:
toplabel = subjlabel
topcan = subj
elif subjlabel == toplabel:
topcan = subj
elif i < topk:
topcan = subj
else:
pass
toadd = relsperent[topcan][
0] if topcan in relsperent else []
relcanse.extend(toadd)
i += 1
relcans.append(relcanse)
# rank relations
rankedrels = self.rankrelations(relcans)
bestrels = [x[0][0] for x in rankedrels]
# build ents per relation
entsperrel = {}
for ent, rels in relsperent.items():
for rel in rels[0]:
if rel not in entsperrel:
entsperrel[rel] = set()
entsperrel[rel].add(ent)
# filter rankedsubjs
filteredrankedsubjs = []
for i in range(len(rankedsubjs)):
filteredrankedsubjs.append([])
for subj, score in rankedsubjs[i]:
if bestrels[i] in entsperrel and \
subj in entsperrel[bestrels[i]]:
filteredrankedsubjs[i].append((subj, score))
if len(filteredrankedsubjs[i]) == 0:
filteredrankedsubjs[i].append((-1, -1.))
bestsubjs = [x[0][0] for x in filteredrankedsubjs]
ret = np.concatenate([
np.expand_dims(np.asarray(bestsubjs, dtype="int32"), axis=1),
np.expand_dims(np.asarray(bestrels, dtype="int32"), axis=1)
],
axis=1)
return ret
def searchsentence(self, s, top=None, topsize=None, exact=True):
s = tokenize(s)
ngrams = self.getallngrams(s, topsize)
return self.searchallngrams(ngrams, top, exact=exact)
def getwords(s):
return tokenize(s)
def getwords(s):
return tokenize(s)
def getdata(p, worddic, chardic, entdic, reldic, maxc=np.infty, maxchar=30):
data = []
gold = []
maxlen = 0
maxwordlen = 0
c = 0
for line in open(p):
q, a = (line[:-1] if line[-1] == "\n" else line).split("\t")
s, p = a.split()
words = tokenize(q)
maxlen = max(maxlen, len(words))
for word in words:
maxwordlen = max(maxwordlen, len(word))
if word not in worddic:
worddic[word] = len(worddic)
if s not in entdic:
entdic[s] = len(entdic)
if p not in reldic:
reldic[p] = len(reldic)
data.append(words)
gold.append([entdic[s], reldic[p]])
c += 1
if c > maxc:
break
print maxwordlen
maxchar = min(maxchar, maxwordlen)
wordmat = np.zeros((c, maxlen)).astype("int32") - 1
charten = np.zeros((c, maxlen, maxchar)).astype("int32") - 1
goldmat = np.zeros((c, 2)).astype("int32")
i = 0
for sent in data:
j = 0
for word in sent:
if len(word) > maxchar:
print word
wordmat[i, j] = worddic[word]
chars = map(ord, word)
charten[i, j, :min(len(chars), maxchar
)] = chars[:min(len(chars), maxchar)]
j += 1
i += 1
i = 0
for x in gold:
goldmat[i, :] = x
i += 1
# making chardic and transforming through chardic
thischardic = dict(map(lambda (x, y): (ord(x), y), chardic.items()))
nextid = 0
while nextid in thischardic.values():
nextid += 1
uniquechars = np.unique(charten)
for uniquechar in list(uniquechars):
if not uniquechar in thischardic and uniquechar >= 0:
thischardic[uniquechar] = nextid
while nextid in thischardic.values():
nextid += 1
chardic.update(dict(map(lambda (x, y): (chr(x), y), thischardic.items())))
print len(chardic), chardic
charten = np.vectorize(lambda x: thischardic[x] if x >= 0 else x)(charten)
datamat = np.concatenate([wordmat.reshape(wordmat.shape + (1, )), charten],
axis=2)
return datamat, goldmat
def run(trainp="fb_train.tsv",
testp="fb_test.tsv",
validp="fb_valid.tsv",
outp="datamat.word.mem.fb2m.pkl",
entnames="subjnames_fb2m.map",
rellist="rels_fb2m.list",
maxnamelen=30):
# worddic
worddic = {"<RARE>": 0}
def updateworddic(*words):
for word in words:
if word not in worddic:
worddic[word] = len(worddic)
# process entity names and relation list
entdic = {}
entmatr = []
entswonames = set()
c = 0
maxlen = 0
for line in open(entnames):
e, n = line.split("\t")
nt = tokenize(n)
nt = nt[:min(len(nt), maxnamelen)]
maxlen = max(maxlen, len(nt))
updateworddic(*nt)
entmatr.append(nt)
if e not in entdic:
entdic[e] = len(entdic)
if c % 1e3 == 0:
print "%.0fk" % (c / 1e3)
c += 1
def updateentk(
*ents
): #ents have not been seen during initial population ==> no titles
for ent in ents:
assert (ent not in entdic)
entdic[ent] = len(entdic)
entswonames.add(ent)
entmatr.append(["<RARE>"])
reldic = {}
relmatr = []
for line in open(rellist):
r = line[:-1]
rt = tokenize(r)
rt = rt[:min(len(rt), maxnamelen)]
maxlen = max(maxlen, len(rt))
updateworddic(*rt)
relmatr.append(rt)
r = "/" + r.replace(".", "/")
if r not in reldic:
reldic[r] = len(reldic)
maxnamelen = min(maxlen, maxnamelen)
print len(entdic), len(reldic), len(worddic), maxnamelen
# process data
def getdata(p, maxc=np.infty):
data = []
gold = []
maxlen = 0
c = 0
for line in open(p):
q, a = (line[:-1] if line[-1] == "\n" else line).split("\t")
s, p = a.split()
words = tokenize(q)
updateworddic(*words)
maxlen = max(maxlen, len(words))
if s not in entdic:
updateentk(s)
if p not in reldic:
raise Exception("impossibru!")
wordidx = map(
lambda x: worddic[x]
if x in worddic else worddic["<RARE>"], words)
data.append(wordidx)
gold.append([entdic[s], reldic[p]])
c += 1
if c % 100 == 0:
print c
if c > maxc:
break
datamat = np.zeros((c, maxlen)).astype("int32") - 1
goldmat = np.zeros((c, 2)).astype("int32")
i = 0
for x in data:
datamat[i, :len(x)] = x
i += 1
i = 0
for x in gold:
goldmat[i, :] = x
i += 1
return datamat, goldmat
traindata = getdata(trainp)
validdata = getdata(validp)
testdata = getdata(testp)
# build ent mat
entmat = np.zeros((len(entmatr), maxnamelen), dtype="int32") - 1
for i in range(len(entmatr)):
x = entmatr[i]
entmat[i, :len(x)] = map(lambda a: worddic[a], x)
# build rel mat
relmat = np.zeros((len(relmatr), maxnamelen), dtype="int32") - 1
for i in range(len(relmatr)):
x = relmatr[i]
relmat[i, :len(x)] = map(lambda a: worddic[a], x)
# pre-package tests:
print entmat.shape[0], len(entdic)
assert (entmat.shape[0] == len(entdic))
# package
entmat = np.concatenate([entmat, relmat], axis=0)
numents = len(entdic)
traindata[1][:, 1] += numents
validdata[1][:, 1] += numents
testdata[1][:, 1] += numents
reldic = {k: v + numents for k, v in reldic.items()}
entdic.update(reldic)
# save
acc = {
"train": traindata,
"valid": validdata,
"test": testdata,
"worddic": worddic,
"entdic": entdic,
"entmat": entmat,
"numents": numents
}
print "%d entities without names in datasets" % len(entswonames)
pickle.dump(acc, open(outp, "w"))
def processline(self, x):
return " ".join(tokenize(x))
def reluri_tokenize(reluri):
return tokenize(reluri.replace("/", " ").replace("_", " "))