class Mux:
global mux_state
global mux_state_00
global session
mux_state_00 = ([0,0,0,0,0])
def __init__(self, logger=None):
"""
Initialize Ultimac Mux R/P PCB mux object with default parameters
"""
self.session = Tel_net()
log.debug("---\t-\t--> MUX: Initialize mux")
mux_state = ([0,0,0,0,0,1,0,0])
mux_state_00 = ([0,0,0,0,0])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state = ([0,0,0,0,0,0,1,0])
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state = ([0,0,0,0,0,0,0,1])
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state = ([0,0,0,0,0,0,1,1])
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
log.debug("---\t-\t--> MUX: mux object constructed")
# Added by Greg Porreca 01-23-2009 to easily select an arbitrary device
def setToDevice(self, device_name):
log.debug("---\t-\t--> switch to device %s" %(device_name))
if(device_name == 'V1'):
self.set_to_rotary_valve1()
if(device_name == 'V2'):
self.set_to_rotary_valve2()
if(device_name == 'V3'):
self.set_to_rotary_valve3()
if(device_name == 'V4'):
self.set_to_rotary_valve4()
if(device_name == 'SP'):
self.set_to_syringe_pump()
if(device_name == 'TCFC0'): # flowcell 0 temperature controller
self.set_to_temperature_control1()
if(device_name == 'TCFC1'): # flowcell 1 temperature controller
self.set_to_temperature_control2()
if(device_name == 'TCRB'): # reagent block temperature controller
self.set_to_reagent_block_cooler()
#------------------------------------------------------------------------------#
# Ultimac Mux R/P PCB FUNCTIONS #
#------------------------------------------------------------------------------#
# Discrete valves
def discrete_valve4_open(self):
"Sets valve V4 to ON state"
log.debug("---\t-\t--> MUX: switch 3-way discrete valve V4 to NO (ligase)")
mux_state_00[0] = 1
mux_state = ([0,0,0,0,0,1,0,0])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
def discrete_valve4_close(self):
"Sets valve V4 to OFF state"
log.debug("---\t-\t--> MUX: switch 3-way discrete valve V4 to NC " + \
"(ligase buffer)")
mux_state_00[0] = 0
mux_state = ([0,0,0,0,0,1,0,0])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
def discrete_valve5_open(self):
"Sets valve V5 to ON state"
log.debug("---\t-\t--> MUX: switch 3-way discrete valve V5 to NO " + \
"(from V3 to FC)")
mux_state_00[1] = 1
mux_state = ([0,0,0,0,0,1,0,0])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
def discrete_valve5_close(self):
"Sets valve V5 to OFF state"
log.debug("---\t-\t--> MUX: switch 3-way discrete valve V5 to NC " + \
"(from mixer to FC)")
mux_state_00[1] = 0
mux_state = ([0,0,0,0,0,1,0,0])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
def discrete_valve6_open(self):
"Sets valve V6 to ON state"
log.debug("---\t-\t--> MUX: switch 3-way discrete valve V6 to NO " + \
"(through FC 2)")
mux_state_00[2] = 1
mux_state = ([0,0,0,0,0,1,0,0])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
def discrete_valve6_close(self):
"Sets valve V6 to OFF state"
log.debug("---\t-\t--> MUX: switch 3-way discrete valve V6 to NC "+ \
"(through FC 1)")
mux_state_00[2] = 0
mux_state = ([0,0,0,0,0,1,0,0])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
def discrete_valve7_open(self):
"Sets valve V7 to ON state"
log.debug("---\t-\t--> MUX: switch 3-way discrete valve V7 to NO (dH2O)")
mux_state_00[3] = 1
mux_state = ([0,0,0,0,0,1,0,0])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
def discrete_valve7_close(self):
"Sets valve V7 to OFF state"
log.debug("---\t-\t--> MUX: switch 3-way discrete valve V7 to NC (air)")
mux_state_00[3] = 0
mux_state = ([0,0,0,0,0,1,0,0])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
# Reagent mixer
def mixer_ON(self):
"Mixing in mixer: ON"
log.debug("---\t-\t--> MUX: mixing chamber on")
mux_state_00[4] = 1
mux_state = ([0,0,0,0,0,1,0,0])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
def mixer_OFF(self):
"Mixing in mixer: OFF"
log.debug("---\t-\t--> MUX: mixing chamber off")
mux_state_00[4] = 0
mux_state = ([0,0,0,0,0,1,0,0])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
# Flowcell heater/cooler
def set_to_temperature_control1(self):
"Communication channel set to temperature controller 1"
log.debug("---\t-\t--> MUX: switch communication to temperature " + \
"controller 1")
mux_state = ([0,0,0,0,0,1,0,1])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
def set_to_temperature_control2(self):
"Communication channel set to temperature controller 2"
log.debug("---\t-\t--> MUX: switch communication to temperature " + \
"controller 2")
mux_state = ([1,0,0,0,0,1,0,1])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
def set_to_reagent_block_cooler(self):
"Communication channel set to reagent block cooler"
log.debug("---\t-\t--> MUX: switch communication to reagent block " + \
"cooler")
mux_state = ([0,1,0,0,0,1,0,1])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
# Rotary valves
def set_to_rotary_valve1(self):
"Communication channel set to rotary valve 1"
log.debug("---\t-\t--> MUX: switch communication to ten port rotary " + \
"valve V1")
mux_state = ([0,0,1,0,0,1,0,1])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
def set_to_rotary_valve2(self):
"Communication channel set to rotary valve 2"
log.debug("---\t-\t--> MUX: switch communication to ten port rotary" + \
" valve V2")
mux_state = ([1,0,1,0,0,1,0,1])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
def set_to_rotary_valve3(self):
"Communication channel set to rotary valve 3"
log.debug("---\t-\t--> MUX: switch communication to ten port rotary" + \
" valve V3")
mux_state = ([0,1,1,0,0,1,0,1])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
def set_to_rotary_valve4(self):
"Communication channel set to rotary valve 4"
log.debug("---\t-\t--> MUX: switch communication to ten port rotary" + \
" valve V4")
mux_state = ([1,1,1,0,0,1,0,1])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
# Syringe pump
def set_to_syringe_pump(self):
"Communication channel set to syringe pump"
log.debug("---\t-\t--> MUX: switch communication to syringe pump")
mux_state = ([1,1,0,0,0,1,0,1])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
def __del__(self):
mux_state = ([0,0,0,0,0,0])
self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>')
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[6]=' + str(1), '>')
self.session.parse_read_string('m_dout[7]=' + str(1), '>')
self.session.parse_read_string('m_dout[6]=' + str(0), '>')
self.session.parse_read_string('m_dout[7]=' + str(0), '>')
self.session.parse_read_string('m_dout[6]=' + str(1), '>')
self.session.parse_read_string('m_dout[7]=' + str(0), '>')
self.session.parse_read_string('m_dout[6]=' + str(0), '>')
return
os.makedirs(home_dir)
except OSError, e:
if e.args[0] == errno.EEXIST: # file exists
pass
else: # it was something else
raise OSError(e)
# end
logger = Logger(config) # initialize logger object
one_time_through=1
while (one_time_through==1):
touch_sensor = \
int(session.parse_read_string('m_din[7]', '>').strip('>').strip())
# if (touch_sensor == 1):
if (one_time_through==1):
one_time_through = 0
#commands.getstatusoutput('mplayer -ao alsa speech/welcome.wav')
#commands.getstatusoutput('mplayer -ao alsa speech/run.wav')
f = open('%s/cycle_list' % (home_dir), 'r+')
cycle_list = f.readlines()
f.close()
t0 = time.time() # get current time
logger.info("---\t-\t--> Started polony sequencing")
class Mux:
global mux_state
global mux_state_00
global session
mux_state_00 = ([0, 0, 0, 0, 0])
def __init__(self, logger=None):
"""Initialize Ultimac Mux R/P PCB mux object with default parameters"""
if logger is not None: # if defined, place logger into Mux
self.logging = logger
self.session = Tel_net()
mux_state = ([0, 0, 0, 0, 0, 1, 0, 0])
mux_state_00 = ([0, 0, 0, 0, 0])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state = ([0, 0, 0, 0, 0, 0, 1, 0])
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state = ([0, 0, 0, 0, 0, 0, 0, 1])
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state = ([0, 0, 0, 0, 0, 0, 1, 1])
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.logging.info("---\t-\t--> Mux object constructed")
#--------------------------------------------------------------------------------------#
# Ultimac Mux R/P PCB FUNCTIONS #
#--------------------------------------------------------------------------------------#
# Discrete valves
def discrete_valve4_open(self):
"Sets valve V4 to ON state"
mux_state_00[0] = 1
mux_state = ([0, 0, 0, 0, 0, 1, 0, 0])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]),
'>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]),
'>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]),
'>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]),
'>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]),
'>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.logging.info(
"---\t-\t--> Switch 3-way discrete valve V4 to NO (ligase)")
def discrete_valve4_close(self):
"Sets valve V4 to OFF state"
mux_state_00[0] = 0
mux_state = ([0, 0, 0, 0, 0, 1, 0, 0])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]),
'>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]),
'>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]),
'>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]),
'>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]),
'>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.logging.info(
"---\t-\t--> Switch 3-way discrete valve V4 to NC (ligase buffer)")
def discrete_valve5_open(self):
"Sets valve V5 to ON state"
mux_state_00[1] = 1
mux_state = ([0, 0, 0, 0, 0, 1, 0, 0])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]),
'>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]),
'>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]),
'>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]),
'>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]),
'>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.logging.info(
"---\t-\t--> Switch 3-way discrete valve V5 to NO (from V3 to FC)")
def discrete_valve5_close(self):
"Sets valve V5 to OFF state"
mux_state_00[1] = 0
mux_state = ([0, 0, 0, 0, 0, 1, 0, 0])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]),
'>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]),
'>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]),
'>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]),
'>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]),
'>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.logging.info(
"---\t-\t--> Switch 3-way discrete valve V5 to NC (from mixer to FC)"
)
def discrete_valve6_open(self):
"Sets valve V6 to ON state"
mux_state_00[2] = 1
mux_state = ([0, 0, 0, 0, 0, 1, 0, 0])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]),
'>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]),
'>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]),
'>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]),
'>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]),
'>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.logging.info(
"---\t-\t--> Switch 3-way discrete valve V6 to NO (through FC 2)")
def discrete_valve6_close(self):
"Sets valve V6 to OFF state"
mux_state_00[2] = 0
mux_state = ([0, 0, 0, 0, 0, 1, 0, 0])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]),
'>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]),
'>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]),
'>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]),
'>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]),
'>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.logging.info(
"---\t-\t--> Switch 3-way discrete valve V6 to NC (through FC 1)")
def discrete_valve7_open(self):
"Sets valve V7 to ON state"
mux_state_00[3] = 1
mux_state = ([0, 0, 0, 0, 0, 1, 0, 0])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]),
'>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]),
'>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]),
'>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]),
'>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]),
'>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.logging.info(
"---\t-\t--> Switch 3-way discrete valve V7 to NO (dH2O)")
def discrete_valve7_close(self):
"Sets valve V7 to OFF state"
mux_state_00[3] = 0
mux_state = ([0, 0, 0, 0, 0, 1, 0, 0])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]),
'>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]),
'>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]),
'>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]),
'>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]),
'>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.logging.info(
"---\t-\t--> Switch 3-way discrete valve V7 to NC (air)")
# Reagent mixer
def mixer_ON(self):
"Mixing in mixer: ON"
mux_state_00[4] = 1
mux_state = ([0, 0, 0, 0, 0, 1, 0, 0])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]),
'>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]),
'>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]),
'>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]),
'>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]),
'>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.logging.info("---\t-\t--> Mixing chamber in use")
def mixer_OFF(self):
"Mixing in mixer: OFF"
mux_state_00[4] = 0
mux_state = ([0, 0, 0, 0, 0, 1, 0, 0])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state_00[0]),
'>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state_00[1]),
'>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state_00[2]),
'>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state_00[3]),
'>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state_00[4]),
'>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.logging.info("---\t-\t--> Mixing chamber is off")
# Flowcell heater/cooler
def set_to_temperature_control1(self):
"Communication channel set to temperature controller 1"
mux_state = ([0, 0, 0, 0, 0, 1, 0, 1])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.logging.info(
"---\t-\t--> Switch communication to temperature controller 1")
def set_to_temperature_control2(self):
"Communication channel set to temperature controller 2"
mux_state = ([1, 0, 0, 0, 0, 1, 0, 1])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.logging.info(
"---\t-\t--> Switch communication to temperature controller 2")
def set_to_reagent_block_cooler(self):
"Communication channel set to reagent block cooler"
mux_state = ([0, 1, 0, 0, 0, 1, 0, 1])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.logging.info(
"---\t-\t--> Switch communication to reagent block cooler")
# Rotary valves
def set_to_rotary_valve1(self):
"Communication channel set to rotary valve 1"
mux_state = ([0, 0, 1, 0, 0, 1, 0, 1])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.logging.info(
"---\t-\t--> Switch communication to ten port rotary valve V1")
def set_to_rotary_valve2(self):
"Communication channel set to rotary valve 2"
mux_state = ([1, 0, 1, 0, 0, 1, 0, 1])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.logging.info(
"---\t-\t--> Switch communication to ten port rotary valve V2")
def set_to_rotary_valve3(self):
"Communication channel set to rotary valve 3"
mux_state = ([0, 1, 1, 0, 0, 1, 0, 1])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.logging.info(
"---\t-\t--> Switch communication to ten port rotary valve V3")
def set_to_rotary_valve4(self):
"Communication channel set to rotary valve 3"
mux_state = ([1, 1, 1, 0, 0, 1, 0, 1])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.logging.info(
"---\t-\t--> Switch communication to ten port rotary valve V3")
# Syringe pump
def set_to_syringe_pump(self):
"Communication channel set to syringe pump"
mux_state = ([1, 1, 0, 0, 0, 1, 0, 1])
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>')
self.session.parse_read_string('m_dout[6]=' + str(mux_state[6]), '>')
self.session.parse_read_string('m_dout[7]=' + str(mux_state[7]), '>')
mux_state[5] = 0
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
mux_state[5] = 1
#self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.logging.info("---\t-\t--> Switch communication to syringe pump")
def __del__(self):
mux_state = ([0, 0, 0, 0, 0, 0])
self.session.parse_read_string('m_dout[0]=' + str(mux_state[0]), '>')
self.session.parse_read_string('m_dout[1]=' + str(mux_state[1]), '>')
self.session.parse_read_string('m_dout[2]=' + str(mux_state[2]), '>')
self.session.parse_read_string('m_dout[3]=' + str(mux_state[3]), '>')
self.session.parse_read_string('m_dout[4]=' + str(mux_state[4]), '>')
self.session.parse_read_string('m_dout[5]=' + str(mux_state[5]), '>')
self.session.parse_read_string('m_dout[6]=' + str(1), '>')
self.session.parse_read_string('m_dout[7]=' + str(1), '>')
self.session.parse_read_string('m_dout[6]=' + str(0), '>')
self.session.parse_read_string('m_dout[7]=' + str(0), '>')
self.session.parse_read_string('m_dout[6]=' + str(1), '>')
self.session.parse_read_string('m_dout[7]=' + str(0), '>')
self.session.parse_read_string('m_dout[6]=' + str(0), '>')
return
packet_loss = 0
while (error != (-1) and packet_loss != (-1)):
ping_reply = commands.getstatusoutput('ping -c 1 10.0.0.56')
find_string = ping_reply
find_string = str(find_string)
error = find_string.find('error')
packet_loss = find_string.find('100% packet loss')
time.sleep(10)
time.sleep(1)
session = Tel_net()
x_hmstat = 1
y_hmstat = 1
while (x_hmstat != 0 and y_hmstat != 0):
x_hmstat = session.parse_read_string('x.hmstat', '>')
x_hmstat = x_hmstat.strip('>')
x_hmstat = x_hmstat.strip()
x_hmstat = int(x_hmstat)
y_hmstat = session.parse_read_string('y.hmstat', '>')
y_hmstat = y_hmstat.strip('>')
y_hmstat = y_hmstat.strip()
y_hmstat = int(y_hmstat)
time.sleep(0.1)
config = ConfigParser.ConfigParser()
config.readfp(open('config.txt'))
home_dir = config.get("communication", "home_dir")
logger = Logger(config) # initialize logger object
one_time_through = 1