def setUp(self):
# switch the backend of matplotlib, so plots can be tested
self.backend = matplotlib.rcParams['backend']
matplotlib.pyplot.switch_backend("Agg")
# create a test instance
self.antimony = '''
model myModel
S1 -> S2; k1*S1;
S1 = 10; S2 = 0;
k1 = 1;
end
'''
self.phrasedml = '''
model1 = model "myModel"
sim1 = simulate uniform(0, 5, 100)
task1 = run sim1 on model1
plot "Figure 1" time vs S1, S2
'''
self.tep = tephrasedml.experiment(self.antimony, self.phrasedml)
self.a1 = """
model m1()
J0: S1 -> S2; k1*S1;
S1 = 10.0; S2=0.0;
k1 = 0.1;
end
"""
self.a2 = """
def test_printpython(self):
"""Test printpython."""
exp = tephrasedml.experiment(self.antimony, self.phrasedml)
exp.printPython(self.phrasedml)
def test_createpython(self):
"""Test createpython."""
exp = tephrasedml.experiment(self.antimony, self.phrasedml)
pstr = exp._toPython(self.phrasedml)
self.assertIsNotNone(pstr)
def test_execute(self):
"""Test execute."""
exp = tephrasedml.experiment(self.antimony, self.phrasedml)
exp.execute(self.phrasedml)
