Exemplos de load_test_wd_loc em Python

Exemplo n.º 1

Arquivo: test_rerun.py Projeto: zjyzjjzmt/drep

def self():
    # Set up
    self = Empty()
    self.s_wd_loc = test_utils.load_solutions_wd()
    self.working_wd_loc = test_utils.load_test_wd_loc()
    self.genomes = test_utils.load_test_genomes()

    logging.shutdown()
    if os.path.isdir(self.working_wd_loc):
        shutil.rmtree(self.working_wd_loc, ignore_errors=True)

    os.mkdir(self.working_wd_loc)
    shutil.copytree(os.path.join(self.s_wd_loc, 'data'), \
                    os.path.join(self.working_wd_loc, 'data'))
    shutil.rmtree(os.path.join(self.working_wd_loc, 'data',
                               'Clustering_files'))

    importlib.reload(logging)

    yield self

    # Teardown
    logging.shutdown()
    if os.path.isdir(self.working_wd_loc):
        shutil.rmtree(self.working_wd_loc, ignore_errors=True)

Exemplo n.º 2

Arquivo: test_cluster.py Projeto: zjyzjjzmt/drep

def self():
    # Set up
    self = Empty()
    self.genomes = test_utils.load_test_genomes()
    self.broken_genome = test_utils.load_broken_genome()
    self.wd_loc = test_utils.load_test_wd_loc()
    self.test_dir = test_utils.load_random_test_dir()
    self.s_wd_loc = test_utils.load_solutions_wd()

    if os.path.isdir(self.test_dir):
        shutil.rmtree(self.test_dir)

    if os.path.isdir(self.wd_loc):
        shutil.rmtree(self.wd_loc, ignore_errors=True)
    if not os.path.isdir(self.test_dir):
        os.mkdir(self.test_dir)

    importlib.reload(logging)

    yield self

    # Teardown
    logging.shutdown()
    if os.path.isdir(self.wd_loc):
        shutil.rmtree(self.wd_loc)
    if os.path.isdir(self.test_dir):
        shutil.rmtree(self.test_dir)

Exemplo n.º 3

Arquivo: test_filter.py Projeto: jlli6t/drep

def self():
    # Set up
    self = Empty()
    self.genomes = test_utils.load_test_genomes()
    self.wd_loc = test_utils.load_test_wd_loc()
    self.s_wd_loc = test_utils.load_solutions_wd()
    self.testdir = test_utils.load_random_test_dir()

    importlib.reload(logging)
    if os.path.isdir(self.wd_loc):
        shutil.rmtree(self.wd_loc)

    yield self

    # Teardown
    logging.shutdown()
    if os.path.isdir(self.wd_loc):
        shutil.rmtree(self.wd_loc)

Exemplo n.º 4

Arquivo: test_filter.py Projeto: zjyzjjzmt/drep

def self(caplog):

    # Set up
    self = Empty()
    self._caplog = caplog
    self.genomes = test_utils.load_test_genomes()
    self.wd_loc = test_utils.load_test_wd_loc()
    self.s_wd_loc = test_utils.load_solutions_wd()
    self.testdir = test_utils.load_random_test_dir()
    self.stinker_genome = os.path.join(test_utils.load_test_backend(), 'other/Enterococcus_faecalis_TX0104.fa')

    self.prodigal_loc = os.path.join(test_utils.load_solutions_wd(), 'data/prodigal/')

    # Teardown
    importlib.reload(logging)
    if os.path.isdir(self.wd_loc):
        shutil.rmtree(self.wd_loc)

    yield self

Exemplo n.º 5

def self():
    # Set up
    self = Empty()
    self.genomes = test_utils.load_test_genomes()
    self.wd_loc = test_utils.load_test_wd_loc()
    self.s_wd_loc = test_utils.load_solutions_wd()
    self.zipped_genome = test_utils.load_zipped_genome()

    importlib.reload(logging)
    if os.path.isdir(self.wd_loc):
        shutil.rmtree(self.wd_loc)
    os.mkdir(self.wd_loc)

    yield self

    importlib.reload(logging)
    if os.path.isdir(self.wd_loc):
        shutil.rmtree(self.wd_loc)
    os.mkdir(self.wd_loc)

Exemplo n.º 6

Arquivo: test_taxonomy.py Projeto: zjyzjjzmt/drep

def self():
    # Set up
    self = Empty()
    self.genomes = test_utils.load_test_genomes()
    self.wd_loc = test_utils.load_test_wd_loc()
    if os.path.isdir(self.wd_loc):
        shutil.rmtree(self.wd_loc)
    self.s_wd_loc = test_utils.load_solutions_taxonomy_wd()

    # copy over the data from solutions directory
    os.mkdir(self.wd_loc)
    shutil.copytree(os.path.join(self.s_wd_loc, 'data'), \
                    os.path.join(self.wd_loc, 'data'))

    importlib.reload(logging)

    yield self

    # Teardown
    logging.shutdown()
    if os.path.isdir(self.wd_loc):
        shutil.rmtree(self.wd_loc)

Exemplo n.º 7

def self():
    # Set up
    self = Empty()
    self.genomes = test_utils.load_test_genomes()
    self.zipped_genomes = test_utils.load_zipped_genomes()
    self.large_genome_set = test_utils.load_large_genome_set()
    self.wd_loc = test_utils.load_test_wd_loc()
    self.wd_loc2 = test_utils.load_test_wd_loc_2()
    self.s_wd_loc = test_utils.load_solutions_wd()

    importlib.reload(logging)
    if os.path.isdir(self.wd_loc):
        shutil.rmtree(self.wd_loc)
    if os.path.isdir(self.wd_loc2):
        shutil.rmtree(self.wd_loc2)

    yield self

    # Teardown
    logging.shutdown()
    if os.path.isdir(self.wd_loc):
        shutil.rmtree(self.wd_loc)
    if os.path.isdir(self.wd_loc2):
        shutil.rmtree(self.wd_loc2)