def test_flow_centrality_real(real_arbor_parser, result_factory):
sources = real_arbor_parser.inputs
targets = real_arbor_parser.outputs
real = real_arbor_parser.arbor.flow_centrality(targets, sources)
expected = result_factory(FIXTURE_DIR, "flow_centrality").result
assert to_jso_like(real) == expected
def test_find_arbor_regions_real(
real_arbor_parser: ArborParser, real_syn_clus: SynapseClustering, result_factory
):
"""depends on test_arbor.test_flow_centralities"""
arbor = real_arbor_parser.arbor
fcs = arbor.flow_centrality(real_arbor_parser.outputs, real_arbor_parser.inputs)
arbor_regions = real_syn_clus.find_arbor_regions(fcs, FRACTION, arbor)
expected = result_factory(FIXTURE_DIR, "find_arbor_regions").result
assert to_jso_like(arbor_regions) == expected
def test_find_axon_real(
real_arbor_parser: ArborParser, real_syn_clus: SynapseClustering, result_factory
):
axon = real_syn_clus.find_axon(
real_arbor_parser, FRACTION, real_arbor_parser.positions
)
expected = result_factory(FIXTURE_DIR, "find_axon").result
assert to_jso_like(axon) == expected
def test_find_axon_cut_real(
real_arbor_parser: ArborParser, real_syn_clus: SynapseClustering, result_factory
):
"""depends on test_find_arbor_regions_real"""
arbor = real_arbor_parser.arbor
fcs = arbor.flow_centrality(real_arbor_parser.outputs, real_arbor_parser.inputs)
arbor_regions = real_syn_clus.find_arbor_regions(fcs, FRACTION, arbor)
axon_cut = real_syn_clus.find_axon_cut(
real_arbor_parser.outputs,
above=arbor_regions.above,
positions=real_arbor_parser.positions,
arbor=arbor,
)
expected = result_factory(FIXTURE_DIR, "find_axon_cut").result
assert to_jso_like(axon_cut) == expected
def test_instantiate_real(real_syn_clus: SynapseClustering, result_factory):
"""Checks that distance_map works, among other things"""
expected = result_factory(FIXTURE_DIR, "synapse_clustering").result
assert to_jso_like(real_syn_clus) == expected
def test_setup_correctly(real_arbor, result_factory):
expected = result_factory("arbor_parser", "from_compact-arbor").result["arbor"]
real_jso = to_jso_like(real_arbor)
assert real_jso == expected