def _assertSchemaEqual(self, expected_schema, actual_schema):
schema_reader = io_utils.SchemaReader()
expected_schema_proto = schema_reader.read(
os.path.join(expected_schema.uri, executor._DEFAULT_FILE_NAME))
actual_schema_proto = schema_reader.read(
os.path.join(actual_schema.uri, executor._DEFAULT_FILE_NAME))
self.assertProtoEquals(expected_schema_proto, actual_schema_proto)
def _provide_schema(self, input_dict,
exec_properties) -> schema_pb2.Schema:
"""Generates schema from either schema or statistics."""
# TODO(zhitaoli): Move constants between this file and component.py to a
# constants.py.
stats = input_dict.get('stats') or input_dict.get('statistics')
schema = input_dict.get('schema')
if bool(stats) == bool(schema):
raise ValueError(
'Exactly only one of schema or stats must be provided')
if schema:
schema_uri = artifact_utils.get_single_uri(schema)
absl.logging.info('Schema is provided. Reading from %s.' %
schema_uri)
schema_reader = io_utils.SchemaReader()
try:
return schema_reader.read(
os.path.join(schema_uri, _DEFAULT_FILE_NAME))
except tf.errors.NotFoundError:
raise ValueError(
'Schema is provided, but failed to read from %s.' %
schema_uri)
train_stats_uri = io_utils.get_only_uri_in_dir(
artifact_utils.get_split_uri(stats, 'train'))
infer_feature_shape = exec_properties['infer_feature_shape']
return tfdv.infer_schema(tfdv.load_statistics(train_stats_uri),
infer_feature_shape)
def Do(self, input_dict, output_dict, exec_properties):
"""TensorFlow ExampleValidator executor entrypoint.
This validates the statistics on the 'eval' split against the schema.
Args:
input_dict: Input dict from input key to a list of artifacts, including:
- stats: A list of 'ExampleStatisticsPath' type which should contain
split 'eval'. Stats on other splits are ignored.
- schema: A list of 'SchemaPath' type which should contain a single
schema artifact.
output_dict: Output dict from key to a list of artifacts, including:
- output: A list of 'ExampleValidationPath' artifact of size one. It
will include a single pbtxt file which contains all anomalies found.
exec_properties: A dict of execution properties. Not used yet.
Returns:
None
"""
self._log_startup(input_dict, output_dict, exec_properties)
tf.logging.info('Validating schema against the computed statistics.')
schema = io_utils.SchemaReader().read(
io_utils.get_only_uri_in_dir(
types.get_single_uri(input_dict['schema'])))
stats = tfdv.load_statistics(
io_utils.get_only_uri_in_dir(
types.get_split_uri(input_dict['stats'], 'eval')))
output_uri = types.get_single_uri(output_dict['output'])
anomalies = tfdv.validate_statistics(stats, schema)
io_utils.write_pbtxt_file(os.path.join(output_uri, DEFAULT_FILE_NAME),
anomalies)
tf.logging.info(
'Validation complete. Anomalies written to {}.'.format(output_uri))
def testSuccess(self):
_executor.Executor().Do({}, self.output_dict, self.exec_properties)
reader = io_utils.SchemaReader()
expected_proto = reader.read(self.source_file_path)
imported_proto = reader.read(
os.path.join(self.tmp_dir, schema_gen_executor.DEFAULT_FILE_NAME))
self.assertEqual(expected_proto, imported_proto)
def Do(self, input_dict: Dict[Text, List[types.Artifact]],
output_dict: Dict[Text, List[types.Artifact]],
exec_properties: Dict[Text, Any]):
self._log_startup(input_dict, output_dict, exec_properties)
schema = io_utils.SchemaReader().read(
io_utils.get_only_uri_in_dir(
artifact_utils.get_single_uri(input_dict[SCHEMA_KEY])))
groups = group_stats_and_examples(input_dict)
for examples, datasets in groups:
datasets = DatasetFeatureStatisticsList(
datasets=list(datasets.values()))
partitions = lists_to_partitions(
datasets, schema, examples,
partition_fn(datasets, schema, examples))
for partition in partitions:
output_uri = os.path.join(
artifact_utils.get_single_uri(output_dict[PARTITIONS_KEY]),
partition.name)
io_utils.write_pbtxt_file(
os.path.join(output_uri, 'schema.pbtxt'), partition.schema)
for i in range(0, len(partition.statistics.datasets)):
dataset = partition.statistics.datasets[i]
example_splits = partition.example_splits[i]
io_utils.write_tfrecord_file(
os.path.join(output_uri, example_splits.split,
'stats_tfrecord'), dataset)
def Do(self, input_dict: Dict[str, List[types.Artifact]],
output_dict: Dict[str, List[types.Artifact]],
exec_properties: Dict[str, Any]) -> None:
"""ImportSchemaGen executor entrypoint.
This generate Schema artifact with given schema_file.
Args:
input_dict: Should be empty.
output_dict: Output dict from key to a list of artifacts, including:
- schema: A list of 'Schema' artifact of size one.
exec_properties: A dict of execution properties, includes:
- schema_file: Source schema file path.
Returns:
None
"""
source_file_path = exec_properties.get(
standard_component_specs.SCHEMA_FILE_KEY)
if not source_file_path:
raise ValueError('Schema file path is missing in exec_properties.')
output_uri = os.path.join(
artifact_utils.get_single_uri(
output_dict[standard_component_specs.SCHEMA_KEY]),
schema_gen_executor.DEFAULT_FILE_NAME)
# Check whether the input file has a proper schema proto.
_ = io_utils.SchemaReader().read(source_file_path)
io_utils.copy_file(source_file_path, output_uri)
logging.info('Copied a schema file from %s to %s.', source_file_path,
output_uri)
def Do(self, input_dict: Dict[Text, List[types.Artifact]],
output_dict: Dict[Text, List[types.Artifact]],
exec_properties: Dict[Text, Any]) -> None:
self._log_startup(input_dict, output_dict, exec_properties)
logging.info('Validating schema against the computed statistics.')
split_uris: List[Text] = []
for artifact in input_dict[executor.STATISTICS_KEY]:
for split in artifact_utils.decode_split_names(
artifact.split_names):
split_uris.append(split)
label_inputs = {
labels.STATS:
tfdv.load_statistics(
io_utils.get_only_uri_in_dir(
artifact_utils.get_split_uri(
input_dict[executor.STATISTICS_KEY], split_uris[0]))),
labels.SCHEMA:
io_utils.SchemaReader().read(
io_utils.get_only_uri_in_dir(
artifact_utils.get_single_uri(
input_dict[executor.SCHEMA_KEY])))
}
output_uri = artifact_utils.get_single_uri(
output_dict[executor.ANOMALIES_KEY])
label_outputs = {labels.SCHEMA_DIFF_PATH: output_uri}
self._Validate(label_inputs, label_outputs)
logging.info(
'Validation complete. Anomalies written to {}.'.format(output_uri))
def parse_schema(input_dict: Dict[Text, List[types.Artifact]]):
schema = input_dict.get(SCHEMA_KEY, None)
if not schema:
return schema
else:
schema_path = os.path.join(artifact_utils.get_single_uri(schema),
_DEFAULT_FILE_NAME)
schema_reader = io_utils.SchemaReader()
parsed_schema = schema_reader.read(schema_path)
return parsed_schema
def _GetSchema(self, schema_path: Text) -> schema_pb2.Schema:
"""Gets a tf.metadata schema.
Args:
schema_path: Path to schema file.
Returns:
A tf.metadata schema.
"""
schema_reader = io_utils.SchemaReader()
return schema_reader.read(schema_path)
def Do(self, input_dict: Dict[Text, List[types.Artifact]],
output_dict: Dict[Text, List[types.Artifact]],
exec_properties: Dict[Text, Any]) -> None:
"""TensorFlow ExampleValidator executor entrypoint.
This validates the statistics on the 'eval' split against the schema.
Args:
input_dict: Input dict from input key to a list of artifacts, including:
- stats: A list of type `standard_artifacts.ExampleStatistics` which
should contain the 'eval' split. Stats on other splits are ignored.
- schema: A list of type `standard_artifacts.Schema` which should
contain a single schema artifact.
output_dict: Output dict from key to a list of artifacts, including:
- output: A list of 'ExampleValidationPath' artifact of size one. It
will include a single pbtxt file which contains all anomalies found.
exec_properties: A dict of execution properties. Not used yet.
Returns:
None
"""
self._log_startup(input_dict, output_dict, exec_properties)
absl.logging.info('Validating schema against the computed statistics.')
label_inputs = {
labels.STATS:
tfdv.load_statistics(
io_utils.get_only_uri_in_dir(
artifact_utils.get_split_uri(input_dict[STATISTICS_KEY],
'eval'))),
labels.SCHEMA:
io_utils.SchemaReader().read(
io_utils.get_only_uri_in_dir(
artifact_utils.get_single_uri(input_dict[SCHEMA_KEY])))
}
output_uri = artifact_utils.get_single_uri(output_dict[ANOMALIES_KEY])
label_outputs = {labels.SCHEMA_DIFF_PATH: output_uri}
self._Validate(label_inputs, label_outputs)
absl.logging.info(
'Validation complete. Anomalies written to {}.'.format(output_uri))
def Do(self, input_dict: Dict[Text, List[types.Artifact]],
output_dict: Dict[Text, List[types.Artifact]],
exec_properties: Dict[Text, Any]) -> None:
"""Computes stats for each split of input using tensorflow_data_validation.
Args:
input_dict: Input dict from input key to a list of Artifacts.
- input_data: A list of type `standard_artifacts.Examples`. This should
contain both 'train' and 'eval' split.
- schema: Optionally, a list of type `standard_artifacts.Schema`. When
the stats_options exec_property also contains a schema, this input
should not be provided.
output_dict: Output dict from output key to a list of Artifacts.
- output: A list of type `standard_artifacts.ExampleStatistics`. This
should contain both the 'train' and 'eval' splits.
exec_properties: A dict of execution properties.
- stats_options_json: Optionally, a JSON representation of StatsOptions.
When a schema is provided as an input, the StatsOptions value should
not also contain a schema.
Raises:
ValueError when a schema is provided both as an input and as part of the
StatsOptions exec_property.
Returns:
None
"""
self._log_startup(input_dict, output_dict, exec_properties)
stats_options = options.StatsOptions()
if STATS_OPTIONS_JSON_KEY in exec_properties:
stats_options_json = exec_properties[STATS_OPTIONS_JSON_KEY]
if stats_options_json:
# TODO(b/150802589): Move jsonable interface to tfx_bsl and use
# json_utils
stats_options = options.StatsOptions.from_json(
stats_options_json)
if input_dict.get(SCHEMA_KEY):
if stats_options.schema:
raise ValueError(
'A schema was provided as an input and the '
'stats_options exec_property also contains a schema '
'value. At most one of these may be set.')
else:
schema = io_utils.SchemaReader().read(
io_utils.get_only_uri_in_dir(
artifact_utils.get_single_uri(input_dict[SCHEMA_KEY])))
stats_options.schema = schema
split_uris = []
for artifact in input_dict[EXAMPLES_KEY]:
for split in artifact_utils.decode_split_names(
artifact.split_names):
uri = os.path.join(artifact.uri, split)
split_uris.append((split, uri))
with self._make_beam_pipeline() as p:
for split, uri in split_uris:
absl.logging.info(
'Generating statistics for split {}'.format(split))
input_uri = io_utils.all_files_pattern(uri)
output_uri = artifact_utils.get_split_uri(
output_dict[STATISTICS_KEY], split)
output_path = os.path.join(output_uri, _DEFAULT_FILE_NAME)
_ = (p
| 'ReadData.' + split >>
beam.io.ReadFromTFRecord(file_pattern=input_uri)
| 'DecodeData.' + split >>
tf_example_decoder.DecodeTFExample()
| 'GenerateStatistics.' + split >>
stats_api.GenerateStatistics(stats_options)
| 'WriteStatsOutput.' + split >> beam.io.WriteToTFRecord(
output_path,
shard_name_template='',
coder=beam.coders.ProtoCoder(
statistics_pb2.DatasetFeatureStatisticsList)))
absl.logging.info(
'Statistics for split {} written to {}.'.format(
split, output_uri))
def Do(self, input_dict: Dict[Text, List[types.Artifact]],
output_dict: Dict[Text, List[types.Artifact]],
exec_properties: Dict[Text, Any]) -> None:
"""Computes stats for each split of input using tensorflow_data_validation.
Args:
input_dict: Input dict from input key to a list of Artifacts.
- input_data: A list of type `standard_artifacts.Examples`. This should
contain both 'train' and 'eval' split.
- schema: Optionally, a list of type `standard_artifacts.Schema`. When
the stats_options exec_property also contains a schema, this input
should not be provided.
output_dict: Output dict from output key to a list of Artifacts.
- output: A list of type `standard_artifacts.ExampleStatistics`. This
should contain both the 'train' and 'eval' splits.
exec_properties: A dict of execution properties.
- stats_options_json: Optionally, a JSON representation of StatsOptions.
When a schema is provided as an input, the StatsOptions value should
not also contain a schema.
Raises:
ValueError when a schema is provided both as an input and as part of the
StatsOptions exec_property.
Returns:
None
"""
self._log_startup(input_dict, output_dict, exec_properties)
stats_options = options.StatsOptions()
if STATS_OPTIONS_JSON_KEY in exec_properties:
stats_options_json = exec_properties[STATS_OPTIONS_JSON_KEY]
if stats_options_json:
# TODO(b/150802589): Move jsonable interface to tfx_bsl and use
# json_utils
stats_options = options.StatsOptions.from_json(
stats_options_json)
if input_dict.get(SCHEMA_KEY):
if stats_options.schema:
raise ValueError(
'A schema was provided as an input and the '
'stats_options exec_property also contains a schema '
'value. At most one of these may be set.')
else:
schema = io_utils.SchemaReader().read(
io_utils.get_only_uri_in_dir(
artifact_utils.get_single_uri(input_dict[SCHEMA_KEY])))
stats_options.schema = schema
split_uris = []
for artifact in input_dict[EXAMPLES_KEY]:
for split in artifact_utils.decode_split_names(
artifact.split_names):
uri = os.path.join(artifact.uri, split)
split_uris.append((split, uri))
with self._make_beam_pipeline() as p:
for split, uri in split_uris:
absl.logging.info(
'Generating statistics for split {}'.format(split))
input_uri = io_utils.all_files_pattern(uri)
tfxio_kwargs = {'file_pattern': input_uri}
# TODO(b/151624179): clean this up after tfx_bsl is released with the
# below flag.
if getattr(tfxio, 'TFXIO_HAS_TELEMETRY', False):
tfxio_kwargs[
'telemetry_descriptors'] = _TELEMETRY_DESCRIPTORS
input_tfxio = tf_example_record.TFExampleRecord(**tfxio_kwargs)
output_uri = artifact_utils.get_split_uri(
output_dict[STATISTICS_KEY], split)
output_path = os.path.join(output_uri, _DEFAULT_FILE_NAME)
data = p | 'TFXIORead[{}]'.format(
split) >> input_tfxio.BeamSource()
# TODO(b/153368237): Clean this up after a release post tfx 0.21.
if not getattr(tfdv, 'TFDV_ACCEPT_RECORD_BATCH', False):
data |= 'RecordBatchToTable[{}]'.format(split) >> beam.Map(
lambda rb: pa.Table.from_batches([rb]))
_ = (data
| 'GenerateStatistics[{}]'.format(split) >>
stats_api.GenerateStatistics(stats_options)
| 'WriteStatsOutput[{}]'.format(split) >>
beam.io.WriteToTFRecord(
output_path,
shard_name_template='',
coder=beam.coders.ProtoCoder(
statistics_pb2.DatasetFeatureStatisticsList)))
absl.logging.info(
'Statistics for split {} written to {}.'.format(
split, output_uri))
def Do(self, input_dict: Dict[str, List[types.Artifact]],
output_dict: Dict[str, List[types.Artifact]],
exec_properties: Dict[str, Any]) -> None:
"""Runs a batch job to evaluate the eval_model against the given input.
Args:
input_dict: Input dict from input key to a list of Artifacts.
- model: exported model.
- examples: examples for eval the model.
output_dict: Output dict from output key to a list of Artifacts.
- evaluation: model evaluation results.
exec_properties: A dict of execution properties.
- eval_config: JSON string of tfma.EvalConfig.
- feature_slicing_spec: JSON string of evaluator_pb2.FeatureSlicingSpec
instance, providing the way to slice the data. Deprecated, use
eval_config.slicing_specs instead.
- example_splits: JSON-serialized list of names of splits on which the
metrics are computed. Default behavior (when example_splits is set to
None) is using the 'eval' split.
Returns:
None
"""
if standard_component_specs.EXAMPLES_KEY not in input_dict:
raise ValueError('EXAMPLES_KEY is missing from input dict.')
if standard_component_specs.EVALUATION_KEY not in output_dict:
raise ValueError('EVALUATION_KEY is missing from output dict.')
if standard_component_specs.MODEL_KEY in input_dict and len(
input_dict[standard_component_specs.MODEL_KEY]) > 1:
raise ValueError('There can be only one candidate model, there are %d.' %
(len(input_dict[standard_component_specs.MODEL_KEY])))
if standard_component_specs.BASELINE_MODEL_KEY in input_dict and len(
input_dict[standard_component_specs.BASELINE_MODEL_KEY]) > 1:
raise ValueError(
'There can be only one baseline model, there are %d.' %
(len(input_dict[standard_component_specs.BASELINE_MODEL_KEY])))
self._log_startup(input_dict, output_dict, exec_properties)
# Add fairness indicator metric callback if necessary.
fairness_indicator_thresholds = json_utils.loads(
exec_properties.get(
standard_component_specs.FAIRNESS_INDICATOR_THRESHOLDS_KEY, 'null'))
add_metrics_callbacks = None
if fairness_indicator_thresholds:
add_metrics_callbacks = [
tfma.post_export_metrics.fairness_indicators( # pytype: disable=module-attr
thresholds=fairness_indicator_thresholds),
]
output_uri = artifact_utils.get_single_uri(
output_dict[constants.EVALUATION_KEY])
# Make sure user packages get propagated to the remote Beam worker.
unused_module_path, extra_pip_packages = udf_utils.decode_user_module_key(
exec_properties.get(standard_component_specs.MODULE_PATH_KEY, None))
for pip_package_path in extra_pip_packages:
local_pip_package_path = io_utils.ensure_local(pip_package_path)
self._beam_pipeline_args.append('--extra_package=%s' %
local_pip_package_path)
eval_shared_model_fn = udf_utils.try_get_fn(
exec_properties=exec_properties,
fn_name='custom_eval_shared_model') or tfma.default_eval_shared_model
run_validation = False
models = []
if (standard_component_specs.EVAL_CONFIG_KEY in exec_properties
and exec_properties[standard_component_specs.EVAL_CONFIG_KEY]):
slice_spec = None
has_baseline = bool(
input_dict.get(standard_component_specs.BASELINE_MODEL_KEY))
eval_config = tfma.EvalConfig()
proto_utils.json_to_proto(
exec_properties[standard_component_specs.EVAL_CONFIG_KEY],
eval_config)
# rubber_stamp is always assumed true, i.e., change threshold will always
# be ignored when a baseline model is missing.
if hasattr(tfma, 'utils'):
eval_config = tfma.utils.update_eval_config_with_defaults(
eval_config, has_baseline=has_baseline, rubber_stamp=True)
tfma.utils.verify_eval_config(eval_config)
else:
# TODO(b/171992041): Replaced by tfma.utils.
eval_config = tfma.update_eval_config_with_defaults(
eval_config, has_baseline=has_baseline, rubber_stamp=True)
tfma.verify_eval_config(eval_config)
# Do not validate model when there is no thresholds configured. This is to
# avoid accidentally blessing models when users forget to set thresholds.
run_validation = bool(
tfma.metrics.metric_thresholds_from_metrics_specs(
eval_config.metrics_specs, eval_config=eval_config))
if len(eval_config.model_specs) > 2:
raise ValueError(
"""Cannot support more than two models. There are %d models in this
eval_config.""" % (len(eval_config.model_specs)))
# Extract model artifacts.
for model_spec in eval_config.model_specs:
if standard_component_specs.MODEL_KEY not in input_dict:
if not model_spec.prediction_key:
raise ValueError(
'model_spec.prediction_key required if model not provided')
continue
if model_spec.is_baseline:
model_artifact = artifact_utils.get_single_instance(
input_dict[standard_component_specs.BASELINE_MODEL_KEY])
else:
model_artifact = artifact_utils.get_single_instance(
input_dict[standard_component_specs.MODEL_KEY])
# TODO(b/171992041): tfma.get_model_type replaced by tfma.utils.
if ((hasattr(tfma, 'utils') and
tfma.utils.get_model_type(model_spec) == tfma.TF_ESTIMATOR) or
hasattr(tfma, 'get_model_type') and
tfma.get_model_type(model_spec) == tfma.TF_ESTIMATOR):
model_path = path_utils.eval_model_path(
model_artifact.uri,
path_utils.is_old_model_artifact(model_artifact))
else:
model_path = path_utils.serving_model_path(
model_artifact.uri,
path_utils.is_old_model_artifact(model_artifact))
logging.info('Using %s as %s model.', model_path, model_spec.name)
models.append(
eval_shared_model_fn(
eval_saved_model_path=model_path,
model_name=model_spec.name,
eval_config=eval_config,
add_metrics_callbacks=add_metrics_callbacks))
else:
eval_config = None
assert (standard_component_specs.FEATURE_SLICING_SPEC_KEY
in exec_properties and
exec_properties[standard_component_specs.FEATURE_SLICING_SPEC_KEY]
), 'both eval_config and feature_slicing_spec are unset.'
feature_slicing_spec = evaluator_pb2.FeatureSlicingSpec()
proto_utils.json_to_proto(
exec_properties[standard_component_specs.FEATURE_SLICING_SPEC_KEY],
feature_slicing_spec)
slice_spec = self._get_slice_spec_from_feature_slicing_spec(
feature_slicing_spec)
model_artifact = artifact_utils.get_single_instance(
input_dict[standard_component_specs.MODEL_KEY])
model_path = path_utils.eval_model_path(
model_artifact.uri, path_utils.is_old_model_artifact(model_artifact))
logging.info('Using %s for model eval.', model_path)
models.append(
eval_shared_model_fn(
eval_saved_model_path=model_path,
model_name='',
eval_config=None,
add_metrics_callbacks=add_metrics_callbacks))
eval_shared_model = models[0] if len(models) == 1 else models
schema = None
if standard_component_specs.SCHEMA_KEY in input_dict:
schema = io_utils.SchemaReader().read(
io_utils.get_only_uri_in_dir(
artifact_utils.get_single_uri(
input_dict[standard_component_specs.SCHEMA_KEY])))
# Load and deserialize example splits from execution properties.
example_splits = json_utils.loads(
exec_properties.get(standard_component_specs.EXAMPLE_SPLITS_KEY,
'null'))
if not example_splits:
example_splits = ['eval']
logging.info("The 'example_splits' parameter is not set, using 'eval' "
'split.')
logging.info('Evaluating model.')
# TempPipInstallContext is needed here so that subprocesses (which
# may be created by the Beam multi-process DirectRunner) can find the
# needed dependencies.
# TODO(b/187122662): Move this to the ExecutorOperator or Launcher.
with udf_utils.TempPipInstallContext(extra_pip_packages):
with self._make_beam_pipeline() as pipeline:
examples_list = []
tensor_adapter_config = None
# pylint: disable=expression-not-assigned
if tfma.is_batched_input(eval_shared_model, eval_config):
tfxio_factory = tfxio_utils.get_tfxio_factory_from_artifact(
examples=input_dict[standard_component_specs.EXAMPLES_KEY],
telemetry_descriptors=_TELEMETRY_DESCRIPTORS,
schema=schema,
raw_record_column_name=tfma_constants.ARROW_INPUT_COLUMN)
# TODO(b/161935932): refactor after TFXIO supports multiple patterns.
for split in example_splits:
split_uris = artifact_utils.get_split_uris(
input_dict[standard_component_specs.EXAMPLES_KEY], split)
for index in range(len(split_uris)):
split_uri = split_uris[index]
file_pattern = io_utils.all_files_pattern(split_uri)
tfxio = tfxio_factory(file_pattern)
data = (
pipeline
| f'ReadFromTFRecordToArrow[{split}][{index}]' >>
tfxio.BeamSource())
examples_list.append(data)
if schema is not None:
# Use last tfxio as TensorRepresentations and ArrowSchema are fixed.
tensor_adapter_config = tensor_adapter.TensorAdapterConfig(
arrow_schema=tfxio.ArrowSchema(),
tensor_representations=tfxio.TensorRepresentations())
else:
for split in example_splits:
split_uris = artifact_utils.get_split_uris(
input_dict[standard_component_specs.EXAMPLES_KEY], split)
for index in range(len(split_uris)):
split_uri = split_uris[index]
file_pattern = io_utils.all_files_pattern(split_uri)
data = (
pipeline
| f'ReadFromTFRecord[{split}][{index}]' >>
beam.io.ReadFromTFRecord(file_pattern=file_pattern))
examples_list.append(data)
custom_extractors = udf_utils.try_get_fn(
exec_properties=exec_properties, fn_name='custom_extractors')
extractors = None
if custom_extractors:
extractors = custom_extractors(
eval_shared_model=eval_shared_model,
eval_config=eval_config,
tensor_adapter_config=tensor_adapter_config)
(examples_list | 'FlattenExamples' >> beam.Flatten()
| 'ExtractEvaluateAndWriteResults' >>
(tfma.ExtractEvaluateAndWriteResults(
eval_shared_model=models[0] if len(models) == 1 else models,
eval_config=eval_config,
extractors=extractors,
output_path=output_uri,
slice_spec=slice_spec,
tensor_adapter_config=tensor_adapter_config)))
logging.info('Evaluation complete. Results written to %s.', output_uri)
if not run_validation:
# TODO(jinhuang): delete the BLESSING_KEY from output_dict when supported.
logging.info('No threshold configured, will not validate model.')
return
# Set up blessing artifact
blessing = artifact_utils.get_single_instance(
output_dict[standard_component_specs.BLESSING_KEY])
blessing.set_string_custom_property(
constants.ARTIFACT_PROPERTY_CURRENT_MODEL_URI_KEY,
artifact_utils.get_single_uri(
input_dict[standard_component_specs.MODEL_KEY]))
blessing.set_int_custom_property(
constants.ARTIFACT_PROPERTY_CURRENT_MODEL_ID_KEY,
input_dict[standard_component_specs.MODEL_KEY][0].id)
if input_dict.get(standard_component_specs.BASELINE_MODEL_KEY):
baseline_model = input_dict[
standard_component_specs.BASELINE_MODEL_KEY][0]
blessing.set_string_custom_property(
constants.ARTIFACT_PROPERTY_BASELINE_MODEL_URI_KEY,
baseline_model.uri)
blessing.set_int_custom_property(
constants.ARTIFACT_PROPERTY_BASELINE_MODEL_ID_KEY, baseline_model.id)
if 'current_component_id' in exec_properties:
blessing.set_string_custom_property(
'component_id', exec_properties['current_component_id'])
# Check validation result and write BLESSED file accordingly.
logging.info('Checking validation results.')
validation_result = tfma.load_validation_result(output_uri)
if validation_result.validation_ok:
io_utils.write_string_file(
os.path.join(blessing.uri, constants.BLESSED_FILE_NAME), '')
blessing.set_int_custom_property(constants.ARTIFACT_PROPERTY_BLESSED_KEY,
constants.BLESSED_VALUE)
else:
io_utils.write_string_file(
os.path.join(blessing.uri, constants.NOT_BLESSED_FILE_NAME), '')
blessing.set_int_custom_property(constants.ARTIFACT_PROPERTY_BLESSED_KEY,
constants.NOT_BLESSED_VALUE)
logging.info('Blessing result %s written to %s.',
validation_result.validation_ok, blessing.uri)
def Do(self, input_dict: Dict[Text, List[types.Artifact]],
output_dict: Dict[Text, List[types.Artifact]],
exec_properties: Dict[Text, Any]) -> None:
"""Computes stats for each split of input using tensorflow_data_validation.
Args:
input_dict: Input dict from input key to a list of Artifacts.
- input_data: A list of type `standard_artifacts.Examples`. This should
contain both 'train' and 'eval' split.
- schema: Optionally, a list of type `standard_artifacts.Schema`. When
the stats_options exec_property also contains a schema, this input
should not be provided.
output_dict: Output dict from output key to a list of Artifacts.
- output: A list of type `standard_artifacts.ExampleStatistics`. This
should contain both the 'train' and 'eval' splits.
exec_properties: A dict of execution properties.
- stats_options_json: Optionally, a JSON representation of StatsOptions.
When a schema is provided as an input, the StatsOptions value should
not also contain a schema.
Raises:
ValueError when a schema is provided both as an input and as part of the
StatsOptions exec_property.
Returns:
None
"""
self._log_startup(input_dict, output_dict, exec_properties)
stats_options = options.StatsOptions()
if STATS_OPTIONS_JSON_KEY in exec_properties:
stats_options_json = exec_properties[STATS_OPTIONS_JSON_KEY]
if stats_options_json:
# TODO(b/150802589): Move jsonable interface to tfx_bsl and use
# json_utils
stats_options = options.StatsOptions.from_json(stats_options_json)
if input_dict.get(SCHEMA_KEY):
if stats_options.schema:
raise ValueError('A schema was provided as an input and the '
'stats_options exec_property also contains a schema '
'value. At most one of these may be set.')
else:
schema = io_utils.SchemaReader().read(
io_utils.get_only_uri_in_dir(
artifact_utils.get_single_uri(input_dict[SCHEMA_KEY])))
stats_options.schema = schema
split_and_tfxio = []
for artifact in input_dict[EXAMPLES_KEY]:
tfxio_factory = tfxio_utils.get_tfxio_factory_from_artifact(
examples=artifact, telemetry_descriptors=_TELEMETRY_DESCRIPTORS)
for split in artifact_utils.decode_split_names(artifact.split_names):
uri = os.path.join(artifact.uri, split)
split_and_tfxio.append(
(split, tfxio_factory(io_utils.all_files_pattern(uri))))
with self._make_beam_pipeline() as p:
for split, tfxio in split_and_tfxio:
absl.logging.info('Generating statistics for split {}'.format(split))
output_uri = artifact_utils.get_split_uri(output_dict[STATISTICS_KEY],
split)
output_path = os.path.join(output_uri, _DEFAULT_FILE_NAME)
data = p | 'TFXIORead[{}]'.format(split) >> tfxio.BeamSource()
_ = (
data
| 'GenerateStatistics[{}]'.format(split) >>
stats_api.GenerateStatistics(stats_options)
| 'WriteStatsOutput[{}]'.format(split) >>
stats_api.WriteStatisticsToTFRecord(output_path))
absl.logging.info('Statistics for split {} written to {}.'.format(
split, output_uri))
def Do(self, input_dict: Dict[Text, List[types.Artifact]],
output_dict: Dict[Text, List[types.Artifact]],
exec_properties: Dict[Text, Any]) -> None:
# Check the inputs
if constants.EXAMPLES not in input_dict:
raise ValueError(f'{constants.EXAMPLES} is missing from inputs')
examples_artifact = input_dict[constants.EXAMPLES]
input_uri = artifact_utils.get_single_uri(examples_artifact)
if len(zenml_path_utils.list_dir(input_uri)) == 0:
raise AssertionError(
'ZenML can not run the evaluation as the provided input '
'configuration does not point towards any data. Specifically, '
'if you are using the agnostic evaluator, please make sure '
'that you are using a proper test_fn in your trainer step to '
'write these results.')
else:
# Check the outputs
if constants.EVALUATION not in output_dict:
raise ValueError(
f'{constants.EVALUATION} is missing from outputs')
evaluation_artifact = output_dict[constants.EVALUATION]
output_uri = artifact_utils.get_single_uri(evaluation_artifact)
# Resolve the schema
schema = None
if constants.SCHEMA in input_dict:
schema_artifact = input_dict[constants.SCHEMA]
schema_uri = artifact_utils.get_single_uri(schema_artifact)
reader = io_utils.SchemaReader()
schema = reader.read(io_utils.get_only_uri_in_dir(schema_uri))
# Create the step with the schema attached if provided
source = exec_properties[StepKeys.SOURCE]
args = exec_properties[StepKeys.ARGS]
c = source_utils.load_source_path_class(source)
evaluator_step: BaseEvaluatorStep = c(**args)
# Check the execution parameters
eval_config = evaluator_step.build_config()
eval_config = tfma.update_eval_config_with_defaults(eval_config)
tfma.verify_eval_config(eval_config)
# Resolve the model
if constants.MODEL in input_dict:
model_artifact = input_dict[constants.MODEL]
model_uri = artifact_utils.get_single_uri(model_artifact)
model_path = path_utils.serving_model_path(model_uri)
model_fn = try_get_fn(evaluator_step.CUSTOM_MODULE,
'custom_eval_shared_model'
) or tfma.default_eval_shared_model
eval_shared_model = model_fn(
model_name='', # TODO: Fix with model names
eval_saved_model_path=model_path,
eval_config=eval_config)
else:
eval_shared_model = None
self._log_startup(input_dict, output_dict, exec_properties)
# Main pipeline
logging.info('Evaluating model.')
with self._make_beam_pipeline() as pipeline:
examples_list = []
tensor_adapter_config = None
if tfma.is_batched_input(eval_shared_model, eval_config):
tfxio_factory = tfxio_utils.get_tfxio_factory_from_artifact(
examples=[
artifact_utils.get_single_instance(
examples_artifact)
],
telemetry_descriptors=_TELEMETRY_DESCRIPTORS,
schema=schema,
raw_record_column_name=tfma_constants.
ARROW_INPUT_COLUMN)
for split in evaluator_step.splits:
file_pattern = io_utils.all_files_pattern(
artifact_utils.get_split_uri(
examples_artifact, split))
tfxio = tfxio_factory(file_pattern)
data = (pipeline
| 'ReadFromTFRecordToArrow[%s]' % split >>
tfxio.BeamSource())
examples_list.append(data)
if schema is not None:
tensor_adapter_config = tensor_adapter.TensorAdapterConfig(
arrow_schema=tfxio.ArrowSchema(),
tensor_representations=tfxio.TensorRepresentations(
))
else:
for split in evaluator_step.splits:
file_pattern = io_utils.all_files_pattern(
artifact_utils.get_split_uri(
examples_artifact, split))
data = (pipeline
| 'ReadFromTFRecord[%s]' % split >> beam.io.
ReadFromTFRecord(file_pattern=file_pattern))
examples_list.append(data)
# Resolve custom extractors
custom_extractors = try_get_fn(evaluator_step.CUSTOM_MODULE,
'custom_extractors')
extractors = None
if custom_extractors:
extractors = custom_extractors(
eval_shared_model=eval_shared_model,
eval_config=eval_config,
tensor_adapter_config=tensor_adapter_config)
# Resolve custom evaluators
custom_evaluators = try_get_fn(evaluator_step.CUSTOM_MODULE,
'custom_evaluators')
evaluators = None
if custom_evaluators:
evaluators = custom_evaluators(
eval_shared_model=eval_shared_model,
eval_config=eval_config,
tensor_adapter_config=tensor_adapter_config)
# Extract, evaluate and write
(examples_list | 'FlattenExamples' >> beam.Flatten()
| 'ExtractEvaluateAndWriteResults' >>
tfma.ExtractEvaluateAndWriteResults(
eval_config=eval_config,
eval_shared_model=eval_shared_model,
output_path=output_uri,
extractors=extractors,
evaluators=evaluators,
tensor_adapter_config=tensor_adapter_config))
logging.info('Evaluation complete. Results written to %s.',
output_uri)
def Do(self, input_dict: Dict[str, List[types.Artifact]],
output_dict: Dict[str, List[types.Artifact]],
exec_properties: Dict[str, Any]) -> None:
"""TensorFlow ExampleValidator executor entrypoint.
This validates statistics against the schema.
Args:
input_dict: Input dict from input key to a list of artifacts, including:
- statistics: A list of type `standard_artifacts.ExampleStatistics`
generated by StatisticsGen.
- schema: A list of type `standard_artifacts.Schema` which should
contain a single schema artifact.
output_dict: Output dict from key to a list of artifacts, including:
- output: A list of 'standard_artifacts.ExampleAnomalies' of size one.
It will include a single binary proto file which contains all
anomalies found.
exec_properties: A dict of execution properties.
- exclude_splits: JSON-serialized list of names of splits that the
example validator should not validate.
Returns:
None
"""
self._log_startup(input_dict, output_dict, exec_properties)
# Load and deserialize exclude splits from execution properties.
exclude_splits = json_utils.loads(
exec_properties.get(standard_component_specs.EXCLUDE_SPLITS_KEY,
'null')) or []
if not isinstance(exclude_splits, list):
raise ValueError(
'exclude_splits in execution properties needs to be a '
'list. Got %s instead.' % type(exclude_splits))
# Setup output splits.
stats_artifact = artifact_utils.get_single_instance(
input_dict[standard_component_specs.STATISTICS_KEY])
stats_split_names = artifact_utils.decode_split_names(
stats_artifact.split_names)
split_names = [
split for split in stats_split_names if split not in exclude_splits
]
anomalies_artifact = artifact_utils.get_single_instance(
output_dict[standard_component_specs.ANOMALIES_KEY])
anomalies_artifact.split_names = artifact_utils.encode_split_names(
split_names)
schema = io_utils.SchemaReader().read(
io_utils.get_only_uri_in_dir(
artifact_utils.get_single_uri(
input_dict[standard_component_specs.SCHEMA_KEY])))
for split in artifact_utils.decode_split_names(
stats_artifact.split_names):
if split in exclude_splits:
continue
logging.info(
'Validating schema against the computed statistics for '
'split %s.', split)
stats_uri = io_utils.get_only_uri_in_dir(
artifact_utils.get_split_uri([stats_artifact], split))
if artifact_utils.is_artifact_version_older_than(
stats_artifact,
artifact_utils._ARTIFACT_VERSION_FOR_STATS_UPDATE): # pylint: disable=protected-access
stats = tfdv.load_statistics(stats_uri)
else:
stats = tfdv.load_stats_binary(stats_uri)
label_inputs = {
standard_component_specs.STATISTICS_KEY: stats,
standard_component_specs.SCHEMA_KEY: schema
}
output_uri = artifact_utils.get_split_uri(
output_dict[standard_component_specs.ANOMALIES_KEY], split)
label_outputs = {labels.SCHEMA_DIFF_PATH: output_uri}
self._Validate(label_inputs, label_outputs)
logging.info(
'Validation complete for split %s. Anomalies written to '
'%s.', split, output_uri)
def get_schema_proto(artifact_uri: Text):
schema_path = os.path.join(artifact_uri, 'schema.pbtxt')
schema = io_utils.SchemaReader().read(schema_path)
return schema
def Do(self, input_dict: Dict[str, List[types.Artifact]],
output_dict: Dict[str, List[types.Artifact]],
exec_properties: Dict[str, Any]) -> None:
"""Computes stats for each split of input using tensorflow_data_validation.
Args:
input_dict: Input dict from input key to a list of Artifacts.
- examples: A list of type `standard_artifacts.Examples`. This should
contain both 'train' and 'eval' split.
- schema: Optionally, a list of type `standard_artifacts.Schema`. When
the stats_options exec_property also contains a schema, this input
should not be provided.
output_dict: Output dict from output key to a list of Artifacts.
- statistics: A list of type `standard_artifacts.ExampleStatistics`.
This should contain both the 'train' and 'eval' splits.
exec_properties: A dict of execution properties.
- stats_options_json: Optionally, a JSON representation of StatsOptions.
When a schema is provided as an input, the StatsOptions value should
not also contain a schema.
- exclude_splits: JSON-serialized list of names of splits where
statistics and sample should not be generated.
Raises:
ValueError when a schema is provided both as an input and as part of the
StatsOptions exec_property.
Returns:
None
"""
self._log_startup(input_dict, output_dict, exec_properties)
# Load and deserialize exclude splits from execution properties.
exclude_splits = json_utils.loads(
exec_properties.get(standard_component_specs.EXCLUDE_SPLITS_KEY,
'null')) or []
if not isinstance(exclude_splits, list):
raise ValueError('exclude_splits in execution properties needs to be a '
'list. Got %s instead.' % type(exclude_splits))
# Setup output splits.
examples = artifact_utils.get_single_instance(
input_dict[standard_component_specs.EXAMPLES_KEY])
examples_split_names = artifact_utils.decode_split_names(
examples.split_names)
split_names = [
split for split in examples_split_names if split not in exclude_splits
]
statistics_artifact = artifact_utils.get_single_instance(
output_dict[standard_component_specs.STATISTICS_KEY])
statistics_artifact.split_names = artifact_utils.encode_split_names(
split_names)
stats_options = options.StatsOptions()
stats_options_json = exec_properties.get(
standard_component_specs.STATS_OPTIONS_JSON_KEY)
if stats_options_json:
# TODO(b/150802589): Move jsonable interface to tfx_bsl and use
# json_utils
stats_options = options.StatsOptions.from_json(stats_options_json)
if input_dict.get(standard_component_specs.SCHEMA_KEY):
if stats_options.schema:
raise ValueError('A schema was provided as an input and the '
'stats_options exec_property also contains a schema '
'value. At most one of these may be set.')
else:
schema = io_utils.SchemaReader().read(
io_utils.get_only_uri_in_dir(
artifact_utils.get_single_uri(
input_dict[standard_component_specs.SCHEMA_KEY])))
stats_options.schema = schema
split_and_tfxio = []
tfxio_factory = tfxio_utils.get_tfxio_factory_from_artifact(
examples=[examples],
telemetry_descriptors=_TELEMETRY_DESCRIPTORS)
for split in artifact_utils.decode_split_names(examples.split_names):
if split in exclude_splits:
continue
uri = artifact_utils.get_split_uri([examples], split)
split_and_tfxio.append(
(split, tfxio_factory(io_utils.all_files_pattern(uri))))
with self._make_beam_pipeline() as p:
for split, tfxio in split_and_tfxio:
logging.info('Generating statistics for split %s.', split)
output_uri = artifact_utils.get_split_uri(
output_dict[standard_component_specs.STATISTICS_KEY], split)
output_path = os.path.join(output_uri, _DEFAULT_FILE_NAME)
data = p | 'TFXIORead[%s]' % split >> tfxio.BeamSource()
_ = (
data
| 'GenerateStatistics[%s]' % split >>
stats_api.GenerateStatistics(stats_options)
| 'WriteStatsOutput[%s]' % split >>
stats_api.WriteStatisticsToBinaryFile(output_path))
logging.info('Statistics for split %s written to %s.', split,
output_uri)
def Do(self, input_dict: Dict[Text, List[types.Artifact]],
output_dict: Dict[Text, List[types.Artifact]],
exec_properties: Dict[Text, Any]) -> None:
"""TensorFlow ExampleValidator executor entrypoint.
This validates the statistics on the 'eval' split against the schema.
Args:
input_dict: Input dict from input key to a list of artifacts, including:
- stats: A list of type `standard_artifacts.ExampleStatistics` which
should contain the 'eval' split. Stats on other splits are ignored.
- schema: A list of type `standard_artifacts.Schema` which should
contain a single schema artifact.
output_dict: Output dict from key to a list of artifacts, including:
- output: A list of 'ExampleValidationPath' artifact of size one. It
will include a single pbtxt file which contains all anomalies found.
exec_properties: A dict of execution properties.
- exclude_splits: JSON-serialized list of names of splits that the
example validator should not validate.
Returns:
None
"""
self._log_startup(input_dict, output_dict, exec_properties)
# Load and deserialize exclude splits from execution properties.
exclude_splits = json_utils.loads(
exec_properties.get(EXCLUDE_SPLITS_KEY, 'null')) or []
if not isinstance(exclude_splits, list):
raise ValueError(
'exclude_splits in execution properties needs to be a '
'list. Got %s instead.' % type(exclude_splits))
schema = io_utils.SchemaReader().read(
io_utils.get_only_uri_in_dir(
artifact_utils.get_single_uri(input_dict[SCHEMA_KEY])))
stats_artifact = artifact_utils.get_single_instance(
input_dict[STATISTICS_KEY])
for split in artifact_utils.decode_split_names(
stats_artifact.split_names):
if split in exclude_splits:
continue
logging.info(
'Validating schema against the computed statistics for '
'split %s.', split)
label_inputs = {
labels.STATS:
tfdv.load_statistics(
io_utils.get_only_uri_in_dir(
os.path.join(stats_artifact.uri, split))),
labels.SCHEMA:
schema
}
output_uri = artifact_utils.get_split_uri(
output_dict[ANOMALIES_KEY], split)
label_outputs = {labels.SCHEMA_DIFF_PATH: output_uri}
self._Validate(label_inputs, label_outputs)
logging.info(
'Validation complete for split %s. Anomalies written to '
'%s.', split, output_uri)
def Do(self, input_dict: Dict[Text, List[types.Artifact]],
output_dict: Dict[Text, List[types.Artifact]],
exec_properties: Dict[Text, Any]) -> None:
"""Runs a batch job to evaluate the eval_model against the given input.
Args:
input_dict: Input dict from input key to a list of Artifacts.
- model_exports: exported model.
- examples: examples for eval the model.
output_dict: Output dict from output key to a list of Artifacts.
- output: model evaluation results.
exec_properties: A dict of execution properties.
- eval_config: JSON string of tfma.EvalConfig.
- feature_slicing_spec: JSON string of evaluator_pb2.FeatureSlicingSpec
instance, providing the way to slice the data. Deprecated, use
eval_config.slicing_specs instead.
Returns:
None
"""
if constants.EXAMPLES_KEY not in input_dict:
raise ValueError('EXAMPLES_KEY is missing from input dict.')
if constants.MODEL_KEY not in input_dict:
raise ValueError('MODEL_KEY is missing from input dict.')
if constants.EVALUATION_KEY not in output_dict:
raise ValueError('EVALUATION_KEY is missing from output dict.')
if len(input_dict[constants.MODEL_KEY]) > 1:
raise ValueError(
'There can be only one candidate model, there are {}.'.format(
len(input_dict[constants.MODEL_KEY])))
if constants.BASELINE_MODEL_KEY in input_dict and len(
input_dict[constants.BASELINE_MODEL_KEY]) > 1:
raise ValueError(
'There can be only one baseline model, there are {}.'.format(
len(input_dict[constants.BASELINE_MODEL_KEY])))
self._log_startup(input_dict, output_dict, exec_properties)
# Add fairness indicator metric callback if necessary.
fairness_indicator_thresholds = exec_properties.get(
'fairness_indicator_thresholds', None)
add_metrics_callbacks = None
if fairness_indicator_thresholds:
# Need to import the following module so that the fairness indicator
# post-export metric is registered.
import tensorflow_model_analysis.addons.fairness.post_export_metrics.fairness_indicators # pylint: disable=g-import-not-at-top, unused-variable
add_metrics_callbacks = [
tfma.post_export_metrics.fairness_indicators( # pytype: disable=module-attr
thresholds=fairness_indicator_thresholds),
]
output_uri = artifact_utils.get_single_uri(
output_dict[constants.EVALUATION_KEY])
run_validation = False
models = []
if 'eval_config' in exec_properties and exec_properties['eval_config']:
slice_spec = None
has_baseline = bool(input_dict.get(constants.BASELINE_MODEL_KEY))
eval_config = tfma.EvalConfig()
json_format.Parse(exec_properties['eval_config'], eval_config)
eval_config = tfma.update_eval_config_with_defaults(
eval_config,
maybe_add_baseline=has_baseline,
maybe_remove_baseline=not has_baseline)
tfma.verify_eval_config(eval_config)
# Do not validate model when there is no thresholds configured. This is to
# avoid accidentally blessing models when users forget to set thresholds.
run_validation = bool(
tfma.metrics.metric_thresholds_from_metrics_specs(
eval_config.metrics_specs))
if len(eval_config.model_specs) > 2:
raise ValueError(
"""Cannot support more than two models. There are {} models in this
eval_config.""".format(len(eval_config.model_specs)))
# Extract model artifacts.
for model_spec in eval_config.model_specs:
if model_spec.is_baseline:
model_uri = artifact_utils.get_single_uri(
input_dict[constants.BASELINE_MODEL_KEY])
else:
model_uri = artifact_utils.get_single_uri(
input_dict[constants.MODEL_KEY])
if tfma.get_model_type(model_spec) == tfma.TF_ESTIMATOR:
model_path = path_utils.eval_model_path(model_uri)
else:
model_path = path_utils.serving_model_path(model_uri)
absl.logging.info('Using {} as {} model.'.format(
model_path, model_spec.name))
models.append(
tfma.default_eval_shared_model(
model_name=model_spec.name,
eval_saved_model_path=model_path,
add_metrics_callbacks=add_metrics_callbacks,
eval_config=eval_config))
else:
eval_config = None
assert ('feature_slicing_spec' in exec_properties
and exec_properties['feature_slicing_spec']
), 'both eval_config and feature_slicing_spec are unset.'
feature_slicing_spec = evaluator_pb2.FeatureSlicingSpec()
json_format.Parse(exec_properties['feature_slicing_spec'],
feature_slicing_spec)
slice_spec = self._get_slice_spec_from_feature_slicing_spec(
feature_slicing_spec)
model_uri = artifact_utils.get_single_uri(
input_dict[constants.MODEL_KEY])
model_path = path_utils.eval_model_path(model_uri)
absl.logging.info('Using {} for model eval.'.format(model_path))
models.append(
tfma.default_eval_shared_model(
eval_saved_model_path=model_path,
add_metrics_callbacks=add_metrics_callbacks))
file_pattern = io_utils.all_files_pattern(
artifact_utils.get_split_uri(input_dict[constants.EXAMPLES_KEY],
'eval'))
eval_shared_model = models[0] if len(models) == 1 else models
schema = None
if constants.SCHEMA_KEY in input_dict:
schema = io_utils.SchemaReader().read(
io_utils.get_only_uri_in_dir(
artifact_utils.get_single_uri(
input_dict[constants.SCHEMA_KEY])))
absl.logging.info('Evaluating model.')
with self._make_beam_pipeline() as pipeline:
# pylint: disable=expression-not-assigned
if _USE_TFXIO:
tensor_adapter_config = None
if tfma.is_batched_input(eval_shared_model, eval_config):
tfxio = tf_example_record.TFExampleRecord(
file_pattern=file_pattern,
schema=schema,
raw_record_column_name=tfma.BATCHED_INPUT_KEY)
if schema is not None:
tensor_adapter_config = tensor_adapter.TensorAdapterConfig(
arrow_schema=tfxio.ArrowSchema(),
tensor_representations=tfxio.TensorRepresentations(
))
data = pipeline | 'ReadFromTFRecordToArrow' >> tfxio.BeamSource(
)
else:
data = pipeline | 'ReadFromTFRecord' >> beam.io.ReadFromTFRecord(
file_pattern=file_pattern)
(data
| 'ExtractEvaluateAndWriteResults' >>
tfma.ExtractEvaluateAndWriteResults(
eval_shared_model=models[0]
if len(models) == 1 else models,
eval_config=eval_config,
output_path=output_uri,
slice_spec=slice_spec,
tensor_adapter_config=tensor_adapter_config))
else:
data = pipeline | 'ReadFromTFRecord' >> beam.io.ReadFromTFRecord(
file_pattern=file_pattern)
(data
| 'ExtractEvaluateAndWriteResults' >>
tfma.ExtractEvaluateAndWriteResults(
eval_shared_model=models[0]
if len(models) == 1 else models,
eval_config=eval_config,
output_path=output_uri,
slice_spec=slice_spec))
absl.logging.info(
'Evaluation complete. Results written to {}.'.format(output_uri))
if not run_validation:
# TODO(jinhuang): delete the BLESSING_KEY from output_dict when supported.
absl.logging.info(
'No threshold configured, will not validate model.')
return
# Set up blessing artifact
blessing = artifact_utils.get_single_instance(
output_dict[constants.BLESSING_KEY])
blessing.set_string_custom_property(
constants.ARTIFACT_PROPERTY_CURRENT_MODEL_URI_KEY,
artifact_utils.get_single_uri(input_dict[constants.MODEL_KEY]))
blessing.set_int_custom_property(
constants.ARTIFACT_PROPERTY_CURRENT_MODEL_ID_KEY,
input_dict[constants.MODEL_KEY][0].id)
if input_dict.get(constants.BASELINE_MODEL_KEY):
baseline_model = input_dict[constants.BASELINE_MODEL_KEY][0]
blessing.set_string_custom_property(
constants.ARTIFACT_PROPERTY_BASELINE_MODEL_URI_KEY,
baseline_model.uri)
blessing.set_int_custom_property(
constants.ARTIFACT_PROPERTY_BASELINE_MODEL_ID_KEY,
baseline_model.id)
if 'current_component_id' in exec_properties:
blessing.set_string_custom_property(
'component_id', exec_properties['current_component_id'])
# Check validation result and write BLESSED file accordingly.
absl.logging.info('Checking validation results.')
validation_result = tfma.load_validation_result(output_uri)
if validation_result.validation_ok:
io_utils.write_string_file(
os.path.join(blessing.uri, constants.BLESSED_FILE_NAME), '')
blessing.set_int_custom_property(
constants.ARTIFACT_PROPERTY_BLESSED_KEY,
constants.BLESSED_VALUE)
else:
io_utils.write_string_file(
os.path.join(blessing.uri, constants.NOT_BLESSED_FILE_NAME),
'')
blessing.set_int_custom_property(
constants.ARTIFACT_PROPERTY_BLESSED_KEY,
constants.NOT_BLESSED_VALUE)
absl.logging.info('Blessing result {} written to {}.'.format(
validation_result.validation_ok, blessing.uri))
def Do(self, input_dict: Dict[Text, List[types.Artifact]],
output_dict: Dict[Text, List[types.Artifact]],
exec_properties: Dict[Text, Any]) -> None:
"""
Main execution logic for the Sequencer component
:param input_dict: input channels
:param output_dict: output channels
:param exec_properties: the execution properties defined in the spec
"""
source = exec_properties[StepKeys.SOURCE]
args = exec_properties[StepKeys.ARGS]
c = source_utils.load_source_path_class(source)
# Get the schema
schema_path = io_utils.get_only_uri_in_dir(
artifact_utils.get_single_uri(input_dict[constants.SCHEMA]))
schema = io_utils.SchemaReader().read(schema_path)
# TODO: Getting the statistics might help the future implementations
sequence_step: BaseSequencerStep = c(schema=schema,
statistics=None,
**args)
# Get split names
input_artifact = artifact_utils.get_single_instance(
input_dict[constants.INPUT_EXAMPLES])
split_names = artifact_utils.decode_split_names(
input_artifact.split_names)
# Create output artifact
output_artifact = artifact_utils.get_single_instance(
output_dict[constants.OUTPUT_EXAMPLES])
output_artifact.split_names = artifact_utils.encode_split_names(
split_names)
with self._make_beam_pipeline() as p:
for s in split_names:
input_uri = io_utils.all_files_pattern(
artifact_utils.get_split_uri(
input_dict[constants.INPUT_EXAMPLES], s))
output_uri = artifact_utils.get_split_uri(
output_dict[constants.OUTPUT_EXAMPLES], s)
output_path = os.path.join(output_uri, self._DEFAULT_FILENAME)
# Read and decode the data
data = \
(p
| 'Read_' + s >> beam.io.ReadFromTFRecord(
file_pattern=input_uri)
| 'Decode_' + s >> tf_example_decoder.DecodeTFExample()
| 'ToDataFrame_' + s >> beam.ParDo(utils.ConvertToDataframe()))
# Window into sessions
s_data = \
(data
| 'AddCategory_' + s >> beam.ParDo(
sequence_step.get_category_do_fn())
| 'AddTimestamp_' + s >> beam.ParDo(
sequence_step.get_timestamp_do_fn())
| 'Sessions_' + s >> beam.WindowInto(
sequence_step.get_window()))
# Combine and transform
p_data = \
(s_data
| 'Combine_' + s >> beam.CombinePerKey(
sequence_step.get_combine_fn()))
# Write the results
_ = \
(p_data
| 'Global_' + s >> beam.WindowInto(GlobalWindows())
| 'RemoveKey_' + s >> beam.ParDo(RemoveKey())
| 'ToExample_' + s >> beam.Map(utils.df_to_example)
| 'Serialize_' + s >> beam.Map(utils.serialize)
| 'Write_' + s >> beam.io.WriteToTFRecord(
output_path,
file_name_suffix='.gz'))
def Do(self, input_dict: Dict[Text, List[types.Artifact]],
output_dict: Dict[Text, List[types.Artifact]],
exec_properties: Dict[Text, Any]) -> None:
"""Runs a batch job to evaluate the eval_model against the given input.
Args:
input_dict: Input dict from input key to a list of Artifacts.
- model_exports: exported model.
- examples: examples for eval the model.
output_dict: Output dict from output key to a list of Artifacts.
- output: model evaluation results.
exec_properties: A dict of execution properties.
- eval_config: JSON string of tfma.EvalConfig.
- feature_slicing_spec: JSON string of evaluator_pb2.FeatureSlicingSpec
instance, providing the way to slice the data. Deprecated, use
eval_config.slicing_specs instead.
- example_splits: JSON-serialized list of names of splits on which the
metrics are computed. Default behavior (when example_splits is set to
None) is using the 'eval' split.
Returns:
None
"""
if constants.EXAMPLES_KEY not in input_dict:
raise ValueError('EXAMPLES_KEY is missing from input dict.')
if constants.MODEL_KEY not in input_dict:
raise ValueError('MODEL_KEY is missing from input dict.')
if constants.EVALUATION_KEY not in output_dict:
raise ValueError('EVALUATION_KEY is missing from output dict.')
if len(input_dict[constants.MODEL_KEY]) > 1:
raise ValueError(
'There can be only one candidate model, there are %d.' %
(len(input_dict[constants.MODEL_KEY])))
if constants.BASELINE_MODEL_KEY in input_dict and len(
input_dict[constants.BASELINE_MODEL_KEY]) > 1:
raise ValueError(
'There can be only one baseline model, there are %d.' %
(len(input_dict[constants.BASELINE_MODEL_KEY])))
self._log_startup(input_dict, output_dict, exec_properties)
# Add fairness indicator metric callback if necessary.
fairness_indicator_thresholds = exec_properties.get(
'fairness_indicator_thresholds', None)
add_metrics_callbacks = None
if fairness_indicator_thresholds:
add_metrics_callbacks = [
tfma.post_export_metrics.fairness_indicators( # pytype: disable=module-attr
thresholds=fairness_indicator_thresholds),
]
output_uri = artifact_utils.get_single_uri(
output_dict[constants.EVALUATION_KEY])
eval_shared_model_fn = udf_utils.try_get_fn(
exec_properties=exec_properties,
fn_name='custom_eval_shared_model'
) or tfma.default_eval_shared_model
run_validation = False
models = []
if 'eval_config' in exec_properties and exec_properties['eval_config']:
slice_spec = None
has_baseline = bool(input_dict.get(constants.BASELINE_MODEL_KEY))
eval_config = tfma.EvalConfig()
json_format.Parse(exec_properties['eval_config'], eval_config)
eval_config = tfma.update_eval_config_with_defaults(
eval_config,
maybe_add_baseline=has_baseline,
maybe_remove_baseline=not has_baseline)
tfma.verify_eval_config(eval_config)
# Do not validate model when there is no thresholds configured. This is to
# avoid accidentally blessing models when users forget to set thresholds.
run_validation = bool(
tfma.metrics.metric_thresholds_from_metrics_specs(
eval_config.metrics_specs))
if len(eval_config.model_specs) > 2:
raise ValueError(
"""Cannot support more than two models. There are %d models in this
eval_config.""" % (len(eval_config.model_specs)))
# Extract model artifacts.
for model_spec in eval_config.model_specs:
if model_spec.is_baseline:
model_uri = artifact_utils.get_single_uri(
input_dict[constants.BASELINE_MODEL_KEY])
else:
model_uri = artifact_utils.get_single_uri(
input_dict[constants.MODEL_KEY])
if tfma.get_model_type(model_spec) == tfma.TF_ESTIMATOR:
model_path = path_utils.eval_model_path(model_uri)
else:
model_path = path_utils.serving_model_path(model_uri)
logging.info('Using %s as %s model.', model_path,
model_spec.name)
models.append(
eval_shared_model_fn(
eval_saved_model_path=model_path,
model_name=model_spec.name,
eval_config=eval_config,
add_metrics_callbacks=add_metrics_callbacks))
else:
eval_config = None
assert ('feature_slicing_spec' in exec_properties
and exec_properties['feature_slicing_spec']
), 'both eval_config and feature_slicing_spec are unset.'
feature_slicing_spec = evaluator_pb2.FeatureSlicingSpec()
json_format.Parse(exec_properties['feature_slicing_spec'],
feature_slicing_spec)
slice_spec = self._get_slice_spec_from_feature_slicing_spec(
feature_slicing_spec)
model_uri = artifact_utils.get_single_uri(
input_dict[constants.MODEL_KEY])
model_path = path_utils.eval_model_path(model_uri)
logging.info('Using %s for model eval.', model_path)
models.append(
eval_shared_model_fn(
eval_saved_model_path=model_path,
model_name='',
eval_config=None,
add_metrics_callbacks=add_metrics_callbacks))
eval_shared_model = models[0] if len(models) == 1 else models
schema = None
if constants.SCHEMA_KEY in input_dict:
schema = io_utils.SchemaReader().read(
io_utils.get_only_uri_in_dir(
artifact_utils.get_single_uri(
input_dict[constants.SCHEMA_KEY])))
# Load and deserialize example splits from execution properties.
example_splits = json_utils.loads(
exec_properties.get(constants.EXAMPLE_SPLITS_KEY, 'null'))
if not example_splits:
example_splits = ['eval']
logging.info(
"The 'example_splits' parameter is not set, using 'eval' "
'split.')
logging.info('Evaluating model.')
with self._make_beam_pipeline() as pipeline:
examples_list = []
tensor_adapter_config = None
# pylint: disable=expression-not-assigned
if _USE_TFXIO and tfma.is_batched_input(eval_shared_model,
eval_config):
tfxio_factory = tfxio_utils.get_tfxio_factory_from_artifact(
examples=[
artifact_utils.get_single_instance(
input_dict[constants.EXAMPLES_KEY])
],
telemetry_descriptors=_TELEMETRY_DESCRIPTORS,
schema=schema,
raw_record_column_name=tfma_constants.ARROW_INPUT_COLUMN)
# TODO(b/161935932): refactor after TFXIO supports multiple patterns.
for split in example_splits:
file_pattern = io_utils.all_files_pattern(
artifact_utils.get_split_uri(
input_dict[constants.EXAMPLES_KEY], split))
tfxio = tfxio_factory(file_pattern)
data = (pipeline
| 'ReadFromTFRecordToArrow[%s]' % split >>
tfxio.BeamSource())
examples_list.append(data)
if schema is not None:
# Use last tfxio as TensorRepresentations and ArrowSchema are fixed.
tensor_adapter_config = tensor_adapter.TensorAdapterConfig(
arrow_schema=tfxio.ArrowSchema(),
tensor_representations=tfxio.TensorRepresentations())
else:
for split in example_splits:
file_pattern = io_utils.all_files_pattern(
artifact_utils.get_split_uri(
input_dict[constants.EXAMPLES_KEY], split))
data = (
pipeline
| 'ReadFromTFRecord[%s]' % split >>
beam.io.ReadFromTFRecord(file_pattern=file_pattern))
examples_list.append(data)
custom_extractors = udf_utils.try_get_fn(
exec_properties=exec_properties, fn_name='custom_extractors')
extractors = None
if custom_extractors:
extractors = custom_extractors(
eval_shared_model=eval_shared_model,
eval_config=eval_config,
tensor_adapter_config=tensor_adapter_config)
(examples_list | 'FlattenExamples' >> beam.Flatten()
| 'ExtractEvaluateAndWriteResults' >>
tfma.ExtractEvaluateAndWriteResults(
eval_shared_model=models[0] if len(models) == 1 else models,
eval_config=eval_config,
extractors=extractors,
output_path=output_uri,
slice_spec=slice_spec,
tensor_adapter_config=tensor_adapter_config))
logging.info('Evaluation complete. Results written to %s.', output_uri)
if not run_validation:
# TODO(jinhuang): delete the BLESSING_KEY from output_dict when supported.
logging.info('No threshold configured, will not validate model.')
return
# Set up blessing artifact
blessing = artifact_utils.get_single_instance(
output_dict[constants.BLESSING_KEY])
blessing.set_string_custom_property(
constants.ARTIFACT_PROPERTY_CURRENT_MODEL_URI_KEY,
artifact_utils.get_single_uri(input_dict[constants.MODEL_KEY]))
blessing.set_int_custom_property(
constants.ARTIFACT_PROPERTY_CURRENT_MODEL_ID_KEY,
input_dict[constants.MODEL_KEY][0].id)
if input_dict.get(constants.BASELINE_MODEL_KEY):
baseline_model = input_dict[constants.BASELINE_MODEL_KEY][0]
blessing.set_string_custom_property(
constants.ARTIFACT_PROPERTY_BASELINE_MODEL_URI_KEY,
baseline_model.uri)
blessing.set_int_custom_property(
constants.ARTIFACT_PROPERTY_BASELINE_MODEL_ID_KEY,
baseline_model.id)
if 'current_component_id' in exec_properties:
blessing.set_string_custom_property(
'component_id', exec_properties['current_component_id'])
# Check validation result and write BLESSED file accordingly.
logging.info('Checking validation results.')
validation_result = tfma.load_validation_result(output_uri)
if validation_result.validation_ok:
io_utils.write_string_file(
os.path.join(blessing.uri, constants.BLESSED_FILE_NAME), '')
blessing.set_int_custom_property(
constants.ARTIFACT_PROPERTY_BLESSED_KEY,
constants.BLESSED_VALUE)
else:
io_utils.write_string_file(
os.path.join(blessing.uri, constants.NOT_BLESSED_FILE_NAME),
'')
blessing.set_int_custom_property(
constants.ARTIFACT_PROPERTY_BLESSED_KEY,
constants.NOT_BLESSED_VALUE)
logging.info('Blessing result %s written to %s.',
validation_result.validation_ok, blessing.uri)