def _compute_f1(self, cur_valid_out, valid_trees):
"""Compute F1 score of the current output on a set of validation trees. If the validation
set is a tuple (two paraphrases), returns the average.
@param cur_valid_out: the current system output on the validation DAs
@param valid_trees: the gold trees for the validation DAs (one or two paraphrases)
@return: (average) F1 score, as a float
"""
evaluator = Evaluator()
for pred_tree, gold_trees in zip(cur_valid_out, valid_trees):
for gold_tree in gold_trees:
evaluator.append(TreeNode(gold_tree), TreeNode(pred_tree))
return evaluator.f1()
def _compute_f1(self, cur_valid_out, valid_trees):
"""Compute F1 score of the current output on a set of validation trees. If the validation
set is a tuple (two paraphrases), returns the average.
@param cur_valid_out: the current system output on the validation DAs
@param valid_trees: the gold trees for the validation DAs (one or two paraphrases)
@return: (average) F1 score, as a float
"""
evaluator = Evaluator()
for pred_tree, gold_trees in zip(cur_valid_out, valid_trees):
for gold_tree in gold_trees:
evaluator.append(TreeNode(gold_tree), TreeNode(pred_tree))
return evaluator.f1()
def eval_trees(das, eval_ttrees, gen_ttrees, eval_doc, language, selector):
"""Evaluate generated trees and print out statistics."""
log_info('Evaluating...')
evaler = Evaluator()
for eval_bundle, eval_ttree, gen_ttree, da in zip(eval_doc.bundles, eval_ttrees, gen_ttrees, das):
# add some stats about the tree directly into the output file
add_bundle_text(eval_bundle, language, selector + 'Xscore',
"P: %.4f R: %.4f F1: %.4f" % p_r_f1_from_counts(*corr_pred_gold(eval_ttree, gen_ttree)))
# collect overall stats
# TODO maybe add cost ??
evaler.append(eval_ttree, gen_ttree)
# print overall stats
log_info("NODE precision: %.4f, Recall: %.4f, F1: %.4f" % evaler.p_r_f1())
log_info("DEP precision: %.4f, Recall: %.4f, F1: %.4f" % evaler.p_r_f1(EvalTypes.DEP))
log_info("Tree size stats:\n * GOLD %s\n * PRED %s\n * DIFF %s" % evaler.size_stats())
log_info("Score stats:\n * GOLD %s\n * PRED %s\n * DIFF %s" % evaler.score_stats())
log_info("Common subtree stats:\n -- SIZE: %s\n -- ΔGLD: %s\n -- ΔPRD: %s" %
evaler.common_substruct_stats())
def eval_tokens(das, eval_tokens, gen_tokens):
"""Evaluate generated tokens and print out statistics."""
postprocess_tokens(eval_tokens, das)
postprocess_tokens(gen_tokens, das)
evaluator = BLEUMeasure()
for pred_sent, gold_sents in zip(gen_tokens, eval_tokens):
evaluator.append(pred_sent, gold_sents)
log_info("BLEU score: %.4f" % (evaluator.bleu() * 100))
evaluator = Evaluator()
for pred_sent, gold_sents in zip(gen_tokens, eval_tokens):
for gold_sent in gold_sents: # effectively an average over all gold paraphrases
evaluator.append(gold_sent, pred_sent)
log_info("TOKEN precision: %.4f, Recall: %.4f, F1: %.4f" % evaluator.p_r_f1(EvalTypes.TOKEN))
log_info("Sentence length stats:\n * GOLD %s\n * PRED %s\n * DIFF %s" % evaluator.size_stats())
log_info("Common subphrase stats:\n -- SIZE: %s\n -- ΔGLD: %s\n -- ΔPRD: %s" %
evaluator.common_substruct_stats())
def seq2seq_gen(args):
"""Sequence-to-sequence generation"""
def write_trees_or_tokens(output_file, das, gen_trees, base_doc, language,
selector):
"""Decide to write t-trees or tokens based on the output file name."""
if output_file.endswith('.txt'):
gen_toks = [t.to_tok_list() for t in gen_trees]
postprocess_tokens(gen_toks, das)
write_tokens(gen_toks, output_file)
else:
write_ttrees(
create_ttree_doc(gen_trees, base_doc, language, selector),
output_file)
ap = ArgumentParser(prog=' '.join(sys.argv[0:2]))
ap.add_argument('-e',
'--eval-file',
type=str,
help='A ttree/text file for evaluation')
ap.add_argument(
'-a',
'--abstr-file',
type=str,
help=
'Lexicalization file (a.k.a. abstraction instructions, for postprocessing)'
)
ap.add_argument('-r',
'--ref-selector',
type=str,
default='',
help='Selector for reference trees in the evaluation file')
ap.add_argument(
'-t',
'--target-selector',
type=str,
default='',
help='Target selector for generated trees in the output file')
ap.add_argument('-d',
'--debug-logfile',
type=str,
help='Debug output file name')
ap.add_argument('-w',
'--output-file',
type=str,
help='Output tree/text file')
ap.add_argument('-D',
'--delex-output-file',
type=str,
help='Output file for trees/text before lexicalization')
ap.add_argument('-b',
'--beam-size',
type=int,
help='Override beam size for beam search decoding')
ap.add_argument('-c',
'--context-file',
type=str,
help='Input ttree/text file with context utterances')
ap.add_argument('seq2seq_model_file',
type=str,
help='Trained Seq2Seq generator model')
ap.add_argument('da_test_file', type=str, help='Input DAs for generation')
args = ap.parse_args(args)
if args.debug_logfile:
set_debug_stream(file_stream(args.debug_logfile, mode='w'))
# load the generator
tgen = Seq2SeqBase.load_from_file(args.seq2seq_model_file)
if args.beam_size is not None:
tgen.beam_size = args.beam_size
# read input files (DAs, contexts)
das = read_das(args.da_test_file)
if args.context_file:
if not tgen.use_context and not tgen.context_bleu_weight:
log_warn(
'Generator is not trained to use context, ignoring context input file.'
)
else:
if args.context_file.endswith('.txt'):
contexts = read_tokens(args.context_file)
else:
contexts = tokens_from_doc(read_ttrees(args.context_file),
tgen.language, tgen.selector)
das = [(context, da) for context, da in zip(contexts, das)]
elif tgen.use_context or tgen.context_bleu_weight:
log_warn('Generator is trained to use context. ' +
'Using empty contexts, expect lower performance.')
das = [([], da) for da in das]
# generate
log_info('Generating...')
gen_trees = []
for num, da in enumerate(das, start=1):
log_debug("\n\nTREE No. %03d" % num)
gen_trees.append(tgen.generate_tree(da))
if num % 100 == 0:
log_info("Generated tree %d" % num)
log_info(tgen.get_slot_err_stats())
if args.delex_output_file is not None:
log_info('Writing delex output...')
write_trees_or_tokens(args.delex_output_file, das, gen_trees, None,
tgen.language, args.target_selector
or tgen.selector)
# evaluate the generated trees against golden trees (delexicalized)
eval_doc = None
if args.eval_file and not args.eval_file.endswith('.txt'):
eval_doc = read_ttrees(args.eval_file)
evaler = Evaluator()
evaler.process_eval_doc(eval_doc, gen_trees, tgen.language,
args.ref_selector, args.target_selector
or tgen.selector)
# lexicalize, if required
if args.abstr_file and tgen.lexicalizer:
log_info('Lexicalizing...')
tgen.lexicalize(gen_trees, args.abstr_file)
# we won't need contexts anymore, but we do need DAs
if tgen.use_context or tgen.context_bleu_weight:
das = [da for _, da in das]
# evaluate the generated & lexicalized tokens (F1 and BLEU scores)
if args.eval_file and args.eval_file.endswith('.txt'):
eval_tokens(das, read_tokens(args.eval_file, ref_mode=True),
[t.to_tok_list() for t in gen_trees])
# write output .yaml.gz or .txt
if args.output_file is not None:
log_info('Writing output...')
write_trees_or_tokens(args.output_file, das, gen_trees, eval_doc,
tgen.language, args.target_selector
or tgen.selector)
def asearch_gen(args):
"""A*search generation"""
from pytreex.core.document import Document
opts, files = getopt(args, 'e:d:w:c:s:')
eval_file = None
fname_ttrees_out = None
cfg_file = None
eval_selector = ''
for opt, arg in opts:
if opt == '-e':
eval_file = arg
elif opt == '-s':
eval_selector = arg
elif opt == '-d':
set_debug_stream(file_stream(arg, mode='w'))
elif opt == '-w':
fname_ttrees_out = arg
elif opt == '-c':
cfg_file = arg
if len(files) != 3:
sys.exit('Invalid arguments.\n' + __doc__)
fname_cand_model, fname_rank_model, fname_da_test = files
log_info('Initializing...')
candgen = RandomCandidateGenerator.load_from_file(fname_cand_model)
ranker = PerceptronRanker.load_from_file(fname_rank_model)
cfg = Config(cfg_file) if cfg_file else {}
cfg.update({'candgen': candgen, 'ranker': ranker})
tgen = ASearchPlanner(cfg)
log_info('Generating...')
das = read_das(fname_da_test)
if eval_file is None:
gen_doc = Document()
else:
eval_doc = read_ttrees(eval_file)
if eval_selector == tgen.selector:
gen_doc = Document()
else:
gen_doc = eval_doc
# generate and evaluate
if eval_file is not None:
# generate + analyze open&close lists
lists_analyzer = ASearchListsAnalyzer()
for num, (da, gold_tree) in enumerate(zip(
das, trees_from_doc(eval_doc, tgen.language, eval_selector)),
start=1):
log_debug("\n\nTREE No. %03d" % num)
gen_tree = tgen.generate_tree(da, gen_doc)
lists_analyzer.append(gold_tree, tgen.open_list, tgen.close_list)
if gen_tree != gold_tree:
log_debug("\nDIFFING TREES:\n" +
tgen.ranker.diffing_trees_with_scores(
da, gold_tree, gen_tree) + "\n")
log_info('Gold tree BEST: %.4f, on CLOSE: %.4f, on ANY list: %4f' %
lists_analyzer.stats())
# evaluate the generated trees against golden trees
eval_ttrees = ttrees_from_doc(eval_doc, tgen.language, eval_selector)
gen_ttrees = ttrees_from_doc(gen_doc, tgen.language, tgen.selector)
log_info('Evaluating...')
evaler = Evaluator()
for eval_bundle, eval_ttree, gen_ttree, da in zip(
eval_doc.bundles, eval_ttrees, gen_ttrees, das):
# add some stats about the tree directly into the output file
add_bundle_text(
eval_bundle, tgen.language, tgen.selector + 'Xscore',
"P: %.4f R: %.4f F1: %.4f" %
p_r_f1_from_counts(*corr_pred_gold(eval_ttree, gen_ttree)))
# collect overall stats
evaler.append(eval_ttree, gen_ttree,
ranker.score(TreeData.from_ttree(eval_ttree), da),
ranker.score(TreeData.from_ttree(gen_ttree), da))
# print overall stats
log_info("NODE precision: %.4f, Recall: %.4f, F1: %.4f" %
evaler.p_r_f1())
log_info("DEP precision: %.4f, Recall: %.4f, F1: %.4f" %
evaler.p_r_f1(EvalTypes.DEP))
log_info("Tree size stats:\n * GOLD %s\n * PRED %s\n * DIFF %s" %
evaler.size_stats())
log_info("Score stats:\n * GOLD %s\n * PRED %s\n * DIFF %s" %
evaler.score_stats())
log_info(
"Common subtree stats:\n -- SIZE: %s\n -- ΔGLD: %s\n -- ΔPRD: %s" %
evaler.common_substruct_stats())
# just generate
else:
for da in das:
tgen.generate_tree(da, gen_doc)
# write output
if fname_ttrees_out is not None:
log_info('Writing output...')
write_ttrees(gen_doc, fname_ttrees_out)
def seq2seq_gen(args):
"""Sequence-to-sequence generation"""
ap = ArgumentParser()
ap.add_argument('-e', '--eval-file', type=str, help='A ttree/text file for evaluation')
ap.add_argument('-a', '--abstr-file', type=str,
help='Lexicalization file (a.k.a. abstraction instructions, for postprocessing)')
ap.add_argument('-r', '--ref-selector', type=str, default='',
help='Selector for reference trees in the evaluation file')
ap.add_argument('-t', '--target-selector', type=str, default='',
help='Target selector for generated trees in the output file')
ap.add_argument('-d', '--debug-logfile', type=str, help='Debug output file name')
ap.add_argument('-w', '--output-file', type=str, help='Output tree/text file')
ap.add_argument('-b', '--beam-size', type=int,
help='Override beam size for beam search decoding')
ap.add_argument('-c', '--context-file', type=str,
help='Input ttree/text file with context utterances')
ap.add_argument('seq2seq_model_file', type=str, help='Trained Seq2Seq generator model')
ap.add_argument('da_test_file', type=str, help='Input DAs for generation')
args = ap.parse_args(args)
if args.debug_logfile:
set_debug_stream(file_stream(args.debug_logfile, mode='w'))
# load the generator
tgen = Seq2SeqBase.load_from_file(args.seq2seq_model_file)
if args.beam_size is not None:
tgen.beam_size = args.beam_size
# read input files
das = read_das(args.da_test_file)
if args.context_file:
if not tgen.use_context and not tgen.context_bleu_weight:
log_warn('Generator is not trained to use context, ignoring context input file.')
else:
if args.context_file.endswith('.txt'):
contexts = read_tokens(args.context_file)
else:
contexts = tokens_from_doc(read_ttrees(args.context_file),
tgen.language, tgen.selector)
das = [(context, da) for context, da in zip(contexts, das)]
# generate
log_info('Generating...')
gen_trees = []
for num, da in enumerate(das, start=1):
log_debug("\n\nTREE No. %03d" % num)
gen_trees.append(tgen.generate_tree(da))
log_info(tgen.get_slot_err_stats())
# evaluate the generated trees against golden trees (delexicalized)
eval_doc = None
if args.eval_file and not args.eval_file.endswith('.txt'):
eval_doc = read_ttrees(args.eval_file)
evaler = Evaluator()
evaler.process_eval_doc(eval_doc, gen_trees, tgen.language, args.ref_selector,
args.target_selector or tgen.selector)
# lexicalize, if required
if args.abstr_file and tgen.lexicalizer:
log_info('Lexicalizing...')
tgen.lexicalize(gen_trees, args.abstr_file)
# evaluate the generated & lexicalized tokens (F1 and BLEU scores)
if args.eval_file and args.eval_file.endswith('.txt'):
eval_tokens(das, read_tokens(args.eval_file, ref_mode=True), gen_trees)
# write output .yaml.gz or .txt
if args.output_file is not None:
log_info('Writing output...')
if args.output_file.endswith('.txt'):
write_tokens(gen_trees, args.output_file)
else:
write_ttrees(create_ttree_doc(gen_trees, eval_doc, tgen.language,
args.target_selector or tgen.selector),
args.output_file)
def seq2seq_gen(args):
"""Sequence-to-sequence generation"""
ap = ArgumentParser(prog=' '.join(sys.argv[0:2]))
ap.add_argument('-e', '--eval-file', type=str, help='A ttree/text file for evaluation')
ap.add_argument('-a', '--abstr-file', type=str,
help='Lexicalization file (a.k.a. abstraction instructions, for postprocessing)')
ap.add_argument('-r', '--ref-selector', type=str, default='',
help='Selector for reference trees in the evaluation file')
ap.add_argument('-t', '--target-selector', type=str, default='',
help='Target selector for generated trees in the output file')
ap.add_argument('-d', '--debug-logfile', type=str, help='Debug output file name')
ap.add_argument('-w', '--output-file', type=str, help='Output tree/text file')
ap.add_argument('-b', '--beam-size', type=int,
help='Override beam size for beam search decoding')
ap.add_argument('-c', '--context-file', type=str,
help='Input ttree/text file with context utterances')
ap.add_argument('seq2seq_model_file', type=str, help='Trained Seq2Seq generator model')
ap.add_argument('da_test_file', type=str, help='Input DAs for generation')
args = ap.parse_args(args)
if args.debug_logfile:
set_debug_stream(file_stream(args.debug_logfile, mode='w'))
# load the generator
tgen = Seq2SeqBase.load_from_file(args.seq2seq_model_file)
if args.beam_size is not None:
tgen.beam_size = args.beam_size
# read input files (DAs, contexts)
das = read_das(args.da_test_file)
if args.context_file:
if not tgen.use_context and not tgen.context_bleu_weight:
log_warn('Generator is not trained to use context, ignoring context input file.')
else:
if args.context_file.endswith('.txt'):
contexts = read_tokens(args.context_file)
else:
contexts = tokens_from_doc(read_ttrees(args.context_file),
tgen.language, tgen.selector)
das = [(context, da) for context, da in zip(contexts, das)]
elif tgen.use_context or tgen.context_bleu_weight:
log_warn('Generator is trained to use context. ' +
'Using empty contexts, expect lower performance.')
das = [([], da) for da in das]
# generate
log_info('Generating...')
gen_trees = []
for num, da in enumerate(das, start=1):
log_debug("\n\nTREE No. %03d" % num)
gen_trees.append(tgen.generate_tree(da))
if num % 100 == 0:
log_info("Generated tree %d" % num)
log_info(tgen.get_slot_err_stats())
# evaluate the generated trees against golden trees (delexicalized)
eval_doc = None
if args.eval_file and not args.eval_file.endswith('.txt'):
eval_doc = read_ttrees(args.eval_file)
evaler = Evaluator()
evaler.process_eval_doc(eval_doc, gen_trees, tgen.language, args.ref_selector,
args.target_selector or tgen.selector)
# lexicalize, if required
if args.abstr_file and tgen.lexicalizer:
log_info('Lexicalizing...')
tgen.lexicalize(gen_trees, args.abstr_file)
# we won't need contexts anymore, but we do need DAs
if tgen.use_context or tgen.context_bleu_weight:
das = [da for _, da in das]
# evaluate the generated & lexicalized tokens (F1 and BLEU scores)
if args.eval_file and args.eval_file.endswith('.txt'):
eval_tokens(das, read_tokens(args.eval_file, ref_mode=True),
[t.to_tok_list() for t in gen_trees])
# write output .yaml.gz or .txt
if args.output_file is not None:
log_info('Writing output...')
if args.output_file.endswith('.txt'):
gen_toks = [t.to_tok_list() for t in gen_trees]
postprocess_tokens(gen_toks, das)
write_tokens(gen_toks, args.output_file)
else:
write_ttrees(create_ttree_doc(gen_trees, eval_doc, tgen.language,
args.target_selector or tgen.selector),
args.output_file)
def asearch_gen(args):
"""A*search generation"""
from pytreex.core.document import Document
opts, files = getopt(args, 'e:d:w:c:s:')
eval_file = None
fname_ttrees_out = None
cfg_file = None
eval_selector = ''
for opt, arg in opts:
if opt == '-e':
eval_file = arg
elif opt == '-s':
eval_selector = arg
elif opt == '-d':
set_debug_stream(file_stream(arg, mode='w'))
elif opt == '-w':
fname_ttrees_out = arg
elif opt == '-c':
cfg_file = arg
if len(files) != 3:
sys.exit('Invalid arguments.\n' + __doc__)
fname_cand_model, fname_rank_model, fname_da_test = files
log_info('Initializing...')
candgen = RandomCandidateGenerator.load_from_file(fname_cand_model)
ranker = PerceptronRanker.load_from_file(fname_rank_model)
cfg = Config(cfg_file) if cfg_file else {}
cfg.update({'candgen': candgen, 'ranker': ranker})
tgen = ASearchPlanner(cfg)
log_info('Generating...')
das = read_das(fname_da_test)
if eval_file is None:
gen_doc = Document()
else:
eval_doc = read_ttrees(eval_file)
if eval_selector == tgen.selector:
gen_doc = Document()
else:
gen_doc = eval_doc
# generate and evaluate
if eval_file is not None:
# generate + analyze open&close lists
lists_analyzer = ASearchListsAnalyzer()
for num, (da, gold_tree) in enumerate(zip(das,
trees_from_doc(eval_doc, tgen.language, eval_selector)),
start=1):
log_debug("\n\nTREE No. %03d" % num)
gen_tree = tgen.generate_tree(da, gen_doc)
lists_analyzer.append(gold_tree, tgen.open_list, tgen.close_list)
if gen_tree != gold_tree:
log_debug("\nDIFFING TREES:\n" + tgen.ranker.diffing_trees_with_scores(da, gold_tree, gen_tree) + "\n")
log_info('Gold tree BEST: %.4f, on CLOSE: %.4f, on ANY list: %4f' % lists_analyzer.stats())
# evaluate the generated trees against golden trees
eval_ttrees = ttrees_from_doc(eval_doc, tgen.language, eval_selector)
gen_ttrees = ttrees_from_doc(gen_doc, tgen.language, tgen.selector)
log_info('Evaluating...')
evaler = Evaluator()
for eval_bundle, eval_ttree, gen_ttree, da in zip(eval_doc.bundles, eval_ttrees, gen_ttrees, das):
# add some stats about the tree directly into the output file
add_bundle_text(eval_bundle, tgen.language, tgen.selector + 'Xscore',
"P: %.4f R: %.4f F1: %.4f" % p_r_f1_from_counts(*corr_pred_gold(eval_ttree, gen_ttree)))
# collect overall stats
evaler.append(eval_ttree,
gen_ttree,
ranker.score(TreeData.from_ttree(eval_ttree), da),
ranker.score(TreeData.from_ttree(gen_ttree), da))
# print overall stats
log_info("NODE precision: %.4f, Recall: %.4f, F1: %.4f" % evaler.p_r_f1())
log_info("DEP precision: %.4f, Recall: %.4f, F1: %.4f" % evaler.p_r_f1(EvalTypes.DEP))
log_info("Tree size stats:\n * GOLD %s\n * PRED %s\n * DIFF %s" % evaler.size_stats())
log_info("Score stats:\n * GOLD %s\n * PRED %s\n * DIFF %s" % evaler.score_stats())
log_info("Common subtree stats:\n -- SIZE: %s\n -- ΔGLD: %s\n -- ΔPRD: %s" %
evaler.common_substruct_stats())
# just generate
else:
for da in das:
tgen.generate_tree(da, gen_doc)
# write output
if fname_ttrees_out is not None:
log_info('Writing output...')
write_ttrees(gen_doc, fname_ttrees_out)