def __get_robot_specs(self, step_container):
# Always returns a Biomek spec. If the source racks are tube racks
# the stock settings are returned.
result = get_pipetting_specs_biomek()
for rack_id in step_container.rack_containers[TRANSFER_ROLES.SOURCE]:
data_item = self.__ror_map[rack_id]
if isinstance(data_item.rack, TubeRack):
result = get_pipetting_specs_biomek_stock()
break
return result
def __create_buffer_worklist(self, sector_layout, buffer_volume, label):
# Creates the buffer dilution worklist for a particular quadrant
# and adds it to the worklist series.
volume = buffer_volume / VOLUME_CONVERSION_FACTOR
ptfs = []
for rack_pos_96 in sector_layout.get_positions():
planned_transfer = PlannedSampleDilution.get_entity(volume, self.DILUTION_INFO, rack_pos_96)
ptfs.append(planned_transfer)
worklist = PlannedWorklist(
label, TRANSFER_TYPES.SAMPLE_DILUTION, get_pipetting_specs_biomek(), planned_liquid_transfers=ptfs
)
self.__worklist_series.add_worklist(self.__last_worklist_index, worklist)
self.__last_worklist_index += 1
def __init__(self, planned_worklist, target_rack,
pipetting_specs=None, ignored_positions=None, parent=None):
WorklistWriter.__init__(self, planned_worklist, target_rack,
pipetting_specs,
ignored_positions=ignored_positions,
parent=parent)
if self.pipetting_specs is None:
self.pipetting_specs = get_pipetting_specs_biomek()
# These are the CsvColumnParameters for the worklists.
self._source_rack_values = None
self._source_pos_values = None
self._target_rack_values = None
self._target_pos_values = None
self._volume_values = None
def __create_buffer_worklist(self, sector_layout, buffer_volume, label):
# Creates the buffer dilution worklist for a particular quadrant
# and adds it to the worklist series.
volume = buffer_volume / VOLUME_CONVERSION_FACTOR
ptfs = []
for rack_pos_96 in sector_layout.get_positions():
planned_transfer = PlannedSampleDilution.get_entity(
volume,
self.DILUTION_INFO,
rack_pos_96)
ptfs.append(planned_transfer)
worklist = PlannedWorklist(label,
TRANSFER_TYPES.SAMPLE_DILUTION,
get_pipetting_specs_biomek(),
planned_liquid_transfers=ptfs)
self.__worklist_series.add_worklist(self.__last_worklist_index,
worklist)
self.__last_worklist_index += 1
def __create_worklist(self, worklist_label, planned_liquid_transfers,
transfer_type, trg_plate_marker, series_key):
# The indices for the worklists are subsequent numbers.
if transfer_type == TRANSFER_TYPES.RACK_SAMPLE_TRANSFER:
robot_specs = get_pipetting_specs_cybio()
elif transfer_type == TRANSFER_TYPES.SAMPLE_DILUTION:
robot_specs = self.builder.dilution_pipetting_specs[
trg_plate_marker]
else:
robot_specs = get_pipetting_specs_biomek()
worklist = PlannedWorklist(label=worklist_label,
transfer_type=transfer_type,
pipetting_specs=robot_specs,
planned_liquid_transfers=planned_liquid_transfers)
worklist_number = self.__get_current_worklist_number(False)
worklist_series = self.__series_map[series_key]
worklist_series.add_worklist(worklist_number, worklist)
def __create_worklist(self, worklist_label, planned_liquid_transfers,
transfer_type, trg_plate_marker, series_key):
# The indices for the worklists are subsequent numbers.
if transfer_type == TRANSFER_TYPES.RACK_SAMPLE_TRANSFER:
robot_specs = get_pipetting_specs_cybio()
elif transfer_type == TRANSFER_TYPES.SAMPLE_DILUTION:
robot_specs = self.builder.dilution_pipetting_specs[
trg_plate_marker]
else:
robot_specs = get_pipetting_specs_biomek()
worklist = PlannedWorklist(
label=worklist_label,
transfer_type=transfer_type,
pipetting_specs=robot_specs,
planned_liquid_transfers=planned_liquid_transfers)
worklist_number = self.__get_current_worklist_number(False)
worklist_series = self.__series_map[series_key]
worklist_series.add_worklist(worklist_number, worklist)
def __init__(self,
planned_worklist,
target_rack,
pipetting_specs=None,
ignored_positions=None,
parent=None):
WorklistWriter.__init__(self,
planned_worklist,
target_rack,
pipetting_specs,
ignored_positions=ignored_positions,
parent=parent)
if self.pipetting_specs is None:
self.pipetting_specs = get_pipetting_specs_biomek()
# These are the CsvColumnParameters for the worklists.
self._source_rack_values = None
self._source_pos_values = None
self._target_rack_values = None
self._target_pos_values = None
self._volume_values = None
