print(json.dumps({'initializing': args.slidepath}))
start = time.time()
tile_processor_pool = TileProcessorPool(workers=PROCESSOR_WORKERS)
tile_processor_pool.start()
tiler = Tiler(slidepath=args.slidepath,
basename=TMP_DIR,
format=FORMAT,
tile_size=TILE_SIZE,
overlap=OVERLAP,
limit_bounds=True,
workers=TILER_WORKERS,
tile_processor_queue=tile_processor_pool.get_queue())
tiler.run()
results = tile_processor_pool.gather_results()
print(json.dumps({'tilingComplete': args.slidepath}))
total_points_found, hpf_centers, hpf_points = find_hpfs(results)
hpfs = list(zip(hpf_centers, hpf_points))
basename = os.path.basename(args.slidepath)
with OpenSlide(args.slidepath) as slide:
hpf_data = visualize(slide,
hpf_centers,
hpf_points,
dir='.',
basename=basename)
