def testFn_Size(self):
"""Test the wdl built-in functional equivalent of 'size()',
which returns a file's size based on the path."""
from toil.job import Job
from toil.common import Toil
options = Job.Runner.getDefaultOptions('./toilWorkflowRun')
options.clean = 'always'
with Toil(options) as toil:
small = process_infile(os.path.abspath('src/toil/test/wdl/testfiles/vocab.wdl'), toil)
small_file = size(small)
large = process_infile(self.encode_data, toil)
larger_file = size(large)
larger_file_in_mb = size(large, 'mb')
assert small_file >= 1800, small_file
assert larger_file >= 70000000, larger_file
assert larger_file_in_mb >= 70, larger_file_in_mb
writetype = 'wb' if isinstance(stdout, bytes) else 'w'
with open(
os.path.join(asldijoiu23r8u34q89fho934t8u34fcurrentworkingdir,
'md5.log'), writetype) as f:
f.write(stdout)
# output-type: File
output_filename = 'md5sum.txt'
value = process_outfile(
output_filename, fileStore, tempDir,
'/home/lifeisaboutfishtacos/dockstore-workflow-md5sum')
rvDict = {"value": value}
return rvDict
if __name__ == "__main__":
options = Job.Runner.getDefaultOptions("./toilWorkflowRun")
options.clean = 'always'
with Toil(options) as fileStore:
# WF Declarations
inputFile = process_infile("md5sum.input", fileStore)
job0 = Job.wrapJobFn(initialize_jobs)
job0 = job0.encapsulate()
md5 = job0.addChild(md5Cls(inputFile=inputFile))
md5_value = md5.rv("value")
fileStore.start(job0)
