def updateView(self):
# Change the PyMOL view to only show the current model and optionally the base model that is
# always shown, if one is indicated by the modelMenu
# This is accomplished by making everything outside of the view transparent
# Why did I use transparency? -> because "hiding" views causes PyMOL to lose the display
# information (i.e. it will forget if you had lines/sticks/spheres shown)
# You don't lose this information by fiddling with transparencies
if (len(self.selectedModels) == 0):
return
model = self.selectedModels[self.currentModel]
self.lblSelected.SetLabel(model)
if (platform.system() == "Linux"):
resizeTextControlForUNIX(self.lblSelected, 35, 250)
# The selection "seqsele" refers to what the user has indicated should be in the ensemble browsing
# If it's not in "seqsele", then it will never be shown by the browser
# First make everything transparent and turn off cartoons (the user will have to deal with the
# cartoon settings changing)
self.cmd.hide("cartoon", "all")
self.cmd.set_bond("stick_transparency", 1, "all")
self.cmd.set("sphere_transparency", 1, "all") # Use "set" for sphere_transparency
# Now define a selection for the intersection of the current model atoms and "sele"
self.cmd.select("ensemblesele", "seqsele and model " + model)
self.cmd.show("cartoon", "ensemblesele")
self.cmd.set_bond("stick_transparency", 0, "ensemblesele")
self.cmd.set("sphere_transparency", 0, "ensemblesele") # Use "set" for sphere_transparency
# Now show the "always show" model if one if selected and it's not the current model
alwaysshow = self.modelMenu.GetStringSelection()
logInfo("Browser view changed to show " + model + " with Always Show set to " + alwaysshow)
if (alwaysshow != "None" and alwaysshow != "" and alwaysshow != model):
self.cmd.select("ensemblesele", "seqsele and model " + alwaysshow)
self.cmd.show("cartoon", "ensemblesele")
self.cmd.set_bond("stick_transparency", 0.7, "ensemblesele") # So you know which one is the "always shown" one
self.cmd.set("sphere_transparency", 0, "ensemblesele") # Use "set" for sphere_transparency
self.cmd.delete("ensemblesele") # Clean up
self.cmd.enable("seqsele") # This is needed otherwise the sequence window removes the selection since it is not enabled
def __init__(self, parent, W, H):
wx.Panel.__init__(self, parent, id=-1, pos=(0, 0), size=(350, H-265), name="ProtocolsPanel")
self.W = W
self.H = H
self.parent = parent
self.SetBackgroundColour("#333333")
self.Show()
if (platform.system() == "Windows"):
self.label = wx.StaticText(self, -1, "Protocols", (5, 5), (340, 25), wx.ALIGN_CENTRE)
self.label.SetFont(wx.Font(12, wx.DEFAULT, wx.ITALIC, wx.BOLD))
elif (platform.system() == "Darwin"):
self.label = wx.StaticBitmap(self, -1, wx.Image(self.parent.scriptdir + "/images/osx/lblProtocols.png", wx.BITMAP_TYPE_PNG).ConvertToBitmap(), pos=(5, 5), size=(340, 25))
else:
self.label = wx.StaticText(self, -1, "Protocols", style=wx.ALIGN_CENTRE)
self.label.SetFont(wx.Font(12, wx.DEFAULT, wx.ITALIC, wx.BOLD))
resizeTextControlForUNIX(self.label, 0, self.GetSize()[0])
self.label.SetForegroundColour("#FFFFFF")
self.protocols = ["Antibody Modeling",
"Docking",
"Energy Minimization",
"Ensemble Browser",
"Ensemble Generation",
"Flexible Peptide Docking",
"Loop Modeling (KIC)",
"Molecular Surfaces",
"Point Mutant Scan",
"Point Mutations",
"Protein Design (Fixbb)",
"Protein Design (MSD)",
"Residue/Ligand Creator",
"Structure Prediction (Comparative Modeling)",
"Superimposition"]
if (platform.system() == "Darwin"):
self.protMenu = wx.ComboBox(self, pos=(5, 30), size=(230, 25), choices=self.protocols, style=wx.CB_READONLY)
else:
self.protMenu = wx.ComboBox(self, pos=(5, 30), size=(230, 25), choices=self.protocols, style=wx.CB_READONLY | wx.CB_SORT)
self.protMenu.SetSelection(self.protocols.index("Superimposition"))
self.protMenu.SetToolTipString("List of currently available protocols")
if (platform.system() == "Darwin"):
self.GoBtn = wx.BitmapButton(self, id=-1, bitmap=wx.Image(self.parent.scriptdir + "/images/osx/GoBtn.png", wx.BITMAP_TYPE_PNG).ConvertToBitmap(), pos=(240, 30), size=(100, 25))
else:
self.GoBtn = wx.Button(self, id=-1, label="Go!", pos=(240, 30), size=(100, 25))
self.GoBtn.SetForegroundColour("#000000")
self.GoBtn.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
self.GoBtn.Bind(wx.EVT_BUTTON, self.changeProtocol)
self.GoBtn.SetToolTipString("Change to the selected protocol")
self.currentProtocol = "Superimposition"
self.protPanel = SuperimpositionPanel(self, W, H)
def activate(self):
# Get the selected models from the sequence window
newmodels = self.seqWin.getSelectedModels()
if (self.selectedModels != newmodels):
self.selectedModels = newmodels
# Add the selections to the "Always Show" menu
self.modelMenu.Clear()
self.modelMenu.Append("None")
for model in self.selectedModels:
self.modelMenu.Append(model)
if (len(self.selectedModels) == 0):
self.lblSelected.SetLabel("Not Selected")
else:
if (self.currentModel >= len(self.selectedModels) or self.currentModel < 0):
self.currentModel = 0
self.lblSelected.SetLabel(self.selectedModels[self.currentModel])
if (platform.system() == "Linux"):
resizeTextControlForUNIX(self.lblSelected, 35, 250)
def activate(self):
# Get the selected models from the sequence window
newmodels = self.seqWin.getSelectedModels()
if (self.selectedModels != newmodels):
self.selectedModels = newmodels
# Add the selections to the "Always Show" menu
self.modelMenu.Clear()
self.modelMenu.Append("None")
for model in self.selectedModels:
self.modelMenu.Append(model)
if (len(self.selectedModels) == 0):
self.lblSelected.SetLabel("Not Selected")
else:
if (self.currentModel >= len(self.selectedModels) or self.currentModel < 0):
self.currentModel = 0
self.lblSelected.SetLabel(self.selectedModels[self.currentModel])
if (platform.system() == "Linux"):
resizeTextControlForUNIX(self.lblSelected, 35, 250)
self.Scroll(0, self.winscrollpos)
def __init__(self, parent, W, H):
if (platform.system() == "Windows"):
wx.lib.scrolledpanel.ScrolledPanel.__init__(self, parent, id=-1, pos=(10, 60), size=(340, H-330), name="ProtManageModules")
winh = H-330
else:
wx.lib.scrolledpanel.ScrolledPanel.__init__(self, parent, id=-1, pos=(10, 60), size=(340, H-290), name="ProtManageModules")
winh = H-290
self.SetBackgroundColour("#333333")
self.parent = parent
if (platform.system() == "Windows"):
self.lblProt = wx.StaticText(self, -1, "Module Manager", (25, 15), (270, 25), style=wx.ALIGN_CENTRE)
self.lblProt.SetFont(wx.Font(12, wx.DEFAULT, wx.ITALIC, wx.BOLD))
elif (platform.system() == "Darwin"):
self.lblProt = wx.StaticBitmap(self, -1, wx.Image(self.parent.parent.scriptdir + "/images/osx/modulemanager/lblModule.png", wx.BITMAP_TYPE_PNG).ConvertToBitmap(), pos=(0, 15), size=(320, 25))
else:
self.lblProt = wx.StaticText(self, -1, "Module Manager", pos=(90, 15), style=wx.ALIGN_CENTRE)
self.lblProt.SetFont(wx.Font(12, wx.DEFAULT, wx.ITALIC, wx.BOLD))
resizeTextControlForUNIX(self.lblProt, 0, self.GetSize()[0])
self.lblProt.SetForegroundColour("#FFFFFF")
if (platform.system() == "Darwin"):
self.HelpBtn = wx.BitmapButton(self, id=-1, bitmap=wx.Image(self.parent.parent.scriptdir + "/images/osx/HelpBtn.png", wx.BITMAP_TYPE_PNG).ConvertToBitmap(), pos=(295, 10), size=(25, 25))
else:
self.HelpBtn = wx.Button(self, id=-1, label="?", pos=(295, 10), size=(25, 25))
self.HelpBtn.SetForegroundColour("#0000FF")
self.HelpBtn.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
self.HelpBtn.Bind(wx.EVT_BUTTON, self.showHelp)
self.HelpBtn.SetToolTipString("Display the help file for this window")
if (platform.system() == "Windows"):
self.lblInst = wx.StaticText(self, -1, "Create module packages for distribution\nand install pre-made packages.\nSee the documentation for how to set up a package.", (0, 45), (320, 25), wx.ALIGN_CENTRE)
self.lblInst.SetFont(wx.Font(10, wx.DEFAULT, wx.ITALIC, wx.NORMAL))
elif (platform.system() == "Darwin"):
self.lblInst = wx.StaticBitmap(self, -1, wx.Image(self.parent.parent.scriptdir + "/images/osx/modulemanager/lblInstModule.png", wx.BITMAP_TYPE_PNG).ConvertToBitmap(), pos=(0, 45), size=(320, 60))
else:
self.lblInst = wx.StaticText(self, -1, "Create module packages for distribution\nand install pre-made packages.\nSee the documentation for how to set up a package.", (40, 45), (320, 25), style=wx.ALIGN_CENTRE)
self.lblInst.SetFont(wx.Font(10, wx.DEFAULT, wx.ITALIC, wx.NORMAL))
resizeTextControlForUNIX(self.lblInst, 0, self.GetSize()[0])
self.lblInst.SetForegroundColour("#FFFFFF")
if (platform.system() == "Windows"):
self.lblInstall = wx.StaticText(self, -1, "Install Module:", (10, 103), (195, 20), wx.ALIGN_LEFT)
self.lblInstall.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
elif (platform.system() == "Darwin"):
self.lblInstall = wx.StaticBitmap(self, -1, wx.Image(self.parent.parent.scriptdir + "/images/osx/modulemanager/lblInstallModule.png", wx.BITMAP_TYPE_PNG).ConvertToBitmap(), pos=(10, 103), size=(195, 20))
else:
self.lblInstall = wx.StaticText(self, -1, "Install Module:", (10, 103), style=wx.ALIGN_LEFT)
self.lblInstall.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
self.lblInstall.SetForegroundColour("#FFFFFF")
if (platform.system() == "Darwin"):
self.btnInstall = wx.BitmapButton(self, id=-1, bitmap=wx.Image(self.parent.parent.scriptdir + "/images/osx/modulemanager/btnInstall.png", wx.BITMAP_TYPE_PNG).ConvertToBitmap(), pos=(210, 100), size=(100, 25))
else:
self.btnInstall = wx.Button(self, id=-1, label="Install", pos=(210, 100), size=(100, 25))
self.btnInstall.SetForegroundColour("#000000")
self.btnInstall.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
self.btnInstall.Bind(wx.EVT_BUTTON, self.installClick)
self.btnInstall.SetToolTipString("Install an IRM module package")
if (platform.system() == "Windows"):
self.lblUninstall = wx.StaticText(self, -1, "Uninstall Module:", (10, 133), (195, 20), wx.ALIGN_LEFT)
self.lblUninstall.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
elif (platform.system() == "Darwin"):
self.lblUninstall = wx.StaticBitmap(self, -1, wx.Image(self.parent.parent.scriptdir + "/images/osx/modulemanager/lblUninstallModule.png", wx.BITMAP_TYPE_PNG).ConvertToBitmap(), pos=(10, 133), size=(195, 20))
else:
self.lblUninstall = wx.StaticText(self, -1, "Uninstall Module:", (10, 133), style=wx.ALIGN_LEFT)
self.lblUninstall.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
self.lblUninstall.SetForegroundColour("#FFFFFF")
if (platform.system() == "Darwin"):
self.btnUninstall = wx.BitmapButton(self, id=-1, bitmap=wx.Image(self.parent.parent.scriptdir + "/images/osx/modulemanager/btnUninstall.png", wx.BITMAP_TYPE_PNG).ConvertToBitmap(), pos=(210, 130), size=(100, 25))
else:
self.btnUninstall = wx.Button(self, id=-1, label="Uninstall", pos=(210, 130), size=(100, 25))
self.btnUninstall.SetForegroundColour("#000000")
self.btnUninstall.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
self.btnUninstall.Bind(wx.EVT_BUTTON, self.uninstallClick)
self.btnUninstall.SetToolTipString("Uninstall a module")
if (platform.system() == "Windows"):
self.lblCreate = wx.StaticText(self, -1, "Create Module:", (10, 163), (195, 20), wx.ALIGN_LEFT)
self.lblCreate.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
elif (platform.system() == "Darwin"):
self.lblCreate = wx.StaticBitmap(self, -1, wx.Image(self.parent.parent.scriptdir + "/images/osx/modulemanager/lblCreateModule.png", wx.BITMAP_TYPE_PNG).ConvertToBitmap(), pos=(10, 163), size=(195, 20))
else:
self.lblCreate = wx.StaticText(self, -1, "Create Module:", (10, 163), style=wx.ALIGN_LEFT)
self.lblCreate.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
self.lblCreate.SetForegroundColour("#FFFFFF")
if (platform.system() == "Darwin"):
self.btnCreate = wx.BitmapButton(self, id=-1, bitmap=wx.Image(self.parent.parent.scriptdir + "/images/osx/modulemanager/btnCreate.png", wx.BITMAP_TYPE_PNG).ConvertToBitmap(), pos=(210, 160), size=(100, 25))
else:
self.btnCreate = wx.Button(self, id=-1, label="Create", pos=(210, 160), size=(100, 25))
self.btnCreate.SetForegroundColour("#000000")
self.btnCreate.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
self.btnCreate.Bind(wx.EVT_BUTTON, self.createClick)
self.btnCreate.SetToolTipString("Create an IRM module for distribution")
scrollh = self.btnCreate.GetPosition()[1] + self.btnCreate.GetSize()[1] + 5
self.SetScrollbars(1, 1, 320, scrollh)
self.winscrollpos = 0
self.Bind(wx.EVT_SCROLLWIN, self.scrolled)
def __init__(self, parent, W, H):
if (platform.system() == "Windows"):
wx.lib.scrolledpanel.ScrolledPanel.__init__(self, parent, id=-1, pos=(10, 60), size=(340, H-330), name="ProtEnsembleBrowse")
winh = H-330
else:
wx.lib.scrolledpanel.ScrolledPanel.__init__(self, parent, id=-1, pos=(10, 60), size=(340, H-290), name="ProtEnsembleBrowse")
winh = H-290
self.SetBackgroundColour("#333333")
self.parent = parent
if (platform.system() == "Windows"):
self.lblProt = wx.StaticText(self, -1, "Ensemble Browser", (25, 15), (270, 25), style=wx.ALIGN_CENTRE)
self.lblProt.SetFont(wx.Font(12, wx.DEFAULT, wx.ITALIC, wx.BOLD))
elif (platform.system() == "Darwin"):
self.lblProt = wx.StaticBitmap(self, -1, wx.Image(self.parent.parent.scriptdir + "/images/osx/ensemblebrowser/lblBrowser.png", wx.BITMAP_TYPE_PNG).ConvertToBitmap(), pos=(25, 15), size=(270, 25))
else:
self.lblProt = wx.StaticText(self, -1, "Ensemble Browser", pos=(90, 15), style=wx.ALIGN_CENTRE)
self.lblProt.SetFont(wx.Font(12, wx.DEFAULT, wx.ITALIC, wx.BOLD))
resizeTextControlForUNIX(self.lblProt, 0, self.GetSize()[0])
self.lblProt.SetForegroundColour("#FFFFFF")
if (platform.system() == "Darwin"):
self.HelpBtn = wx.BitmapButton(self, id=-1, bitmap=wx.Image(self.parent.parent.scriptdir + "/images/osx/HelpBtn.png", wx.BITMAP_TYPE_PNG).ConvertToBitmap(), pos=(295, 10), size=(25, 25))
else:
self.HelpBtn = wx.Button(self, id=-1, label="?", pos=(295, 10), size=(25, 25))
self.HelpBtn.SetForegroundColour("#0000FF")
self.HelpBtn.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
self.HelpBtn.Bind(wx.EVT_BUTTON, self.showHelp)
self.HelpBtn.SetToolTipString("Display the help file for this window")
if (platform.system() == "Windows"):
self.lblInst = wx.StaticText(self, -1, "1. Load the desired structures into the\nSequence Window.\n\n2. Superimpose structures if necessary\n\n3. Select regions of the ensembles that\nwill be viewed.", (0, 45), (320, 25), wx.ALIGN_CENTRE)
self.lblInst.SetFont(wx.Font(10, wx.DEFAULT, wx.ITALIC, wx.NORMAL))
elif (platform.system() == "Darwin"):
self.lblInst = wx.StaticBitmap(self, -1, wx.Image(self.parent.parent.scriptdir + "/images/osx/ensemblebrowser/lblInstBrowser.png", wx.BITMAP_TYPE_PNG).ConvertToBitmap(), pos=(0, 45), size=(320, 120))
else:
self.lblInst = wx.StaticText(self, -1, "1. Load the desired structures into the\nSequence Window.\n\n2. Superimpose structures if necessary\n\n3. Select regions of the ensembles that\nwill be viewed.", (40, 45), (320, 25), style=wx.ALIGN_CENTRE)
self.lblInst.SetFont(wx.Font(10, wx.DEFAULT, wx.ITALIC, wx.NORMAL))
resizeTextControlForUNIX(self.lblInst, 0, self.GetSize()[0])
self.lblInst.SetForegroundColour("#FFFFFF")
if (platform.system() == "Windows"):
self.lblAlways = wx.StaticText(self, -1, "Always Show:", (5, 175), (150, 30), wx.ALIGN_CENTRE)
self.lblAlways.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
elif (platform.system() == "Darwin"):
self.lblAlways = wx.StaticBitmap(self, -1, wx.Image(self.parent.parent.scriptdir + "/images/osx/ensemblebrowser/lblAlways.png", wx.BITMAP_TYPE_PNG).ConvertToBitmap(), pos=(25, 175), size=(150, 30))
else:
self.lblAlways = wx.StaticText(self, -1, "Always Show:", (25, 175), (150, 30), wx.ALIGN_CENTRE)
self.lblAlways.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
resizeTextControlForUNIX(self.lblAlways, 5, 150)
self.lblAlways.SetForegroundColour("#FFFFFF")
if (platform.system() == "Darwin"):
self.modelMenu = wx.ComboBox(self, pos=(160, 175), size=(150, 25), choices=[], style=wx.CB_READONLY)
else:
self.modelMenu = wx.ComboBox(self, pos=(160, 170), size=(150, 25), choices=[], style=wx.CB_READONLY)
self.modelMenu.SetToolTipString("Model to always display with semi-transparency")
self.selectedModels = []
if (platform.system() == "Darwin"):
self.btnLeft = wx.BitmapButton(self, id=-1, bitmap=wx.Image(self.parent.parent.scriptdir + "/images/osx/ensemblebrowser/btnLeft.png", wx.BITMAP_TYPE_PNG).ConvertToBitmap(), pos=(5, 220), size=(25, 25))
else:
self.btnLeft = wx.Button(self, id=-1, label="<", pos=(5, 220), size=(25, 25))
self.btnLeft.SetForegroundColour("#000000")
self.btnLeft.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
self.btnLeft.Bind(wx.EVT_BUTTON, self.leftClick)
self.btnLeft.SetToolTipString("Cycle to previous model")
if (platform.system() == "Darwin"):
self.btnRight = wx.BitmapButton(self, id=-1, bitmap=wx.Image(self.parent.parent.scriptdir + "/images/osx/ensemblebrowser/btnRight.png", wx.BITMAP_TYPE_PNG).ConvertToBitmap(), pos=(290, 220), size=(25, 25))
else:
self.btnRight = wx.Button(self, id=-1, label=">", pos=(290, 220), size=(25, 25))
self.btnRight.SetForegroundColour("#000000")
self.btnRight.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
self.btnRight.Bind(wx.EVT_BUTTON, self.rightClick)
self.btnRight.SetToolTipString("Cycle to next model")
if (platform.system() != "Linux"):
self.lblSelected = wx.StaticText(self, -1, "Not Selected", (35, 225), (250, 30), wx.ALIGN_CENTRE)
else:
self.lblSelected = wx.StaticText(self, -1, "Not Selected", (35, 225), (250, 30), wx.ALIGN_CENTRE)
resizeTextControlForUNIX(self.lblSelected, 35, 250)
self.lblSelected.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
self.lblSelected.SetForegroundColour("#FFFFFF")
self.currentModel = -1
scrollh = self.btnLeft.GetPosition()[1] + self.btnLeft.GetSize()[1] + 5
self.SetScrollbars(1, 1, 320, scrollh)
self.winscrollpos = 0
self.Bind(wx.EVT_SCROLLWIN, self.scrolled)
def __init__(self, parent, W, H):
if (platform.system() == "Windows"):
wx.lib.scrolledpanel.ScrolledPanel.__init__(
self,
parent,
id=-1,
pos=(10, 60),
size=(340, H - 330),
name="ProtManageModules")
winh = H - 330
else:
wx.lib.scrolledpanel.ScrolledPanel.__init__(
self,
parent,
id=-1,
pos=(10, 60),
size=(340, H - 290),
name="ProtManageModules")
winh = H - 290
self.SetBackgroundColour("#333333")
self.parent = parent
if (platform.system() == "Windows"):
self.lblProt = wx.StaticText(self,
-1,
"Module Manager", (25, 15), (270, 25),
style=wx.ALIGN_CENTRE)
self.lblProt.SetFont(wx.Font(12, wx.DEFAULT, wx.ITALIC, wx.BOLD))
elif (platform.system() == "Darwin"):
self.lblProt = wx.StaticBitmap(
self,
-1,
wx.Image(
self.parent.parent.scriptdir + "/images/osx/lblModule.png",
wx.BITMAP_TYPE_PNG).ConvertToBitmap(),
pos=(25, 15),
size=(270, 25))
else:
self.lblProt = wx.StaticText(self,
-1,
"Module Manager",
pos=(90, 15),
style=wx.ALIGN_CENTRE)
self.lblProt.SetFont(wx.Font(12, wx.DEFAULT, wx.ITALIC, wx.BOLD))
resizeTextControlForUNIX(self.lblProt, 0, self.GetSize()[0])
self.lblProt.SetForegroundColour("#FFFFFF")
if (platform.system() == "Darwin"):
self.HelpBtn = wx.BitmapButton(
self,
id=-1,
bitmap=wx.Image(
self.parent.parent.scriptdir + "/images/osx/HelpBtn.png",
wx.BITMAP_TYPE_PNG).ConvertToBitmap(),
pos=(295, 10),
size=(25, 25))
else:
self.HelpBtn = wx.Button(self,
id=-1,
label="?",
pos=(295, 10),
size=(25, 25))
self.HelpBtn.SetForegroundColour("#0000FF")
self.HelpBtn.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
self.HelpBtn.Bind(wx.EVT_BUTTON, self.showHelp)
self.HelpBtn.SetToolTipString("Display the help file for this window")
if (platform.system() == "Windows"):
self.lblInst = wx.StaticText(
self, -1,
"Create module packages for distribution\nand install pre-made packages.\nSee the documentation for how to set up a package.",
(0, 45), (320, 25), wx.ALIGN_CENTRE)
self.lblInst.SetFont(wx.Font(10, wx.DEFAULT, wx.ITALIC, wx.NORMAL))
elif (platform.system() == "Darwin"):
self.lblInst = wx.StaticBitmap(
self,
-1,
wx.Image(
self.parent.parent.scriptdir +
"/images/osx/lblInstBrowser.png",
wx.BITMAP_TYPE_PNG).ConvertToBitmap(),
pos=(0, 45),
size=(320, 120))
else:
self.lblInst = wx.StaticText(
self,
-1,
"Create module packages for distribution\nand install pre-made packages.\nSee the documentation for how to set up a package.",
(40, 45), (320, 25),
style=wx.ALIGN_CENTRE)
self.lblInst.SetFont(wx.Font(10, wx.DEFAULT, wx.ITALIC, wx.NORMAL))
resizeTextControlForUNIX(self.lblInst, 0, self.GetSize()[0])
self.lblInst.SetForegroundColour("#FFFFFF")
if (platform.system() == "Windows"):
self.lblInstall = wx.StaticText(self, -1, "Install Module:",
(10, 103), (195, 20),
wx.ALIGN_LEFT)
self.lblInstall.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL,
wx.BOLD))
elif (platform.system() == "Darwin"):
self.lblInstall = wx.StaticBitmap(
self,
-1,
wx.Image(
self.parent.parent.scriptdir +
"/images/osx/lblInstallModule.png",
wx.BITMAP_TYPE_PNG).ConvertToBitmap(),
pos=(10, 103),
size=(195, 20))
else:
self.lblInstall = wx.StaticText(self,
-1,
"Install Module:", (10, 103),
style=wx.ALIGN_LEFT)
self.lblInstall.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL,
wx.BOLD))
self.lblInstall.SetForegroundColour("#FFFFFF")
if (platform.system() == "Darwin"):
self.btnInstall = wx.BitmapButton(
self,
id=-1,
bitmap=wx.Image(
self.parent.parent.scriptdir +
"/images/osx/btnInstall.png",
wx.BITMAP_TYPE_PNG).ConvertToBitmap(),
pos=(210, 100),
size=(100, 25))
else:
self.btnInstall = wx.Button(self,
id=-1,
label="Install",
pos=(210, 100),
size=(100, 25))
self.btnInstall.SetForegroundColour("#000000")
self.btnInstall.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL,
wx.BOLD))
self.btnInstall.Bind(wx.EVT_BUTTON, self.installClick)
self.btnInstall.SetToolTipString("Install an IRM module package")
if (platform.system() == "Windows"):
self.lblUninstall = wx.StaticText(self, -1, "Uninstall Module:",
(10, 133), (195, 20),
wx.ALIGN_LEFT)
self.lblUninstall.SetFont(
wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
elif (platform.system() == "Darwin"):
self.lblUninstall = wx.StaticBitmap(
self,
-1,
wx.Image(
self.parent.parent.scriptdir +
"/images/osx/lblUninstallModule.png",
wx.BITMAP_TYPE_PNG).ConvertToBitmap(),
pos=(10, 133),
size=(195, 20))
else:
self.lblUninstall = wx.StaticText(self,
-1,
"Uninstall Module:", (10, 133),
style=wx.ALIGN_LEFT)
self.lblUninstall.SetFont(
wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
self.lblUninstall.SetForegroundColour("#FFFFFF")
if (platform.system() == "Darwin"):
self.btnUninstall = wx.BitmapButton(
self,
id=-1,
bitmap=wx.Image(
self.parent.parent.scriptdir +
"/images/osx/btnUninstall.png",
wx.BITMAP_TYPE_PNG).ConvertToBitmap(),
pos=(210, 130),
size=(100, 25))
else:
self.btnUninstall = wx.Button(self,
id=-1,
label="Uninstall",
pos=(210, 130),
size=(100, 25))
self.btnUninstall.SetForegroundColour("#000000")
self.btnUninstall.SetFont(
wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
self.btnUninstall.Bind(wx.EVT_BUTTON, self.uninstallClick)
self.btnUninstall.SetToolTipString("Uninstall a module")
if (platform.system() == "Windows"):
self.lblCreate = wx.StaticText(self, -1, "Create Module:",
(10, 163), (195, 20), wx.ALIGN_LEFT)
self.lblCreate.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
elif (platform.system() == "Darwin"):
self.lblCreate = wx.StaticBitmap(
self,
-1,
wx.Image(
self.parent.parent.scriptdir +
"/images/osx/lblCreateModule.png",
wx.BITMAP_TYPE_PNG).ConvertToBitmap(),
pos=(10, 163),
size=(195, 20))
else:
self.lblCreate = wx.StaticText(self,
-1,
"Create Module:", (10, 163),
style=wx.ALIGN_LEFT)
self.lblCreate.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
self.lblCreate.SetForegroundColour("#FFFFFF")
if (platform.system() == "Darwin"):
self.btnCreate = wx.BitmapButton(
self,
id=-1,
bitmap=wx.Image(
self.parent.parent.scriptdir +
"/images/osx/btnCreateModule.png",
wx.BITMAP_TYPE_PNG).ConvertToBitmap(),
pos=(210, 160),
size=(100, 25))
else:
self.btnCreate = wx.Button(self,
id=-1,
label="Create",
pos=(210, 160),
size=(100, 25))
self.btnCreate.SetForegroundColour("#000000")
self.btnCreate.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
self.btnCreate.Bind(wx.EVT_BUTTON, self.createClick)
self.btnCreate.SetToolTipString(
"Create an IRM module for distribution")
scrollh = self.btnCreate.GetPosition()[1] + self.btnCreate.GetSize(
)[1] + 5
self.SetScrollbars(1, 1, 320, scrollh)
self.winscrollpos = 0
self.Bind(wx.EVT_SCROLLWIN, self.scrolled)
def __init__(self, parent, W, H):
wx.Panel.__init__(self,
parent,
id=-1,
pos=(0, 0),
size=(350, H - 265),
name="ProtocolsPanel")
self.W = W
self.H = H
self.parent = parent
self.SetBackgroundColour("#333333")
self.Show()
if (platform.system() == "Windows"):
self.label = wx.StaticText(self, -1, "Protocols", (5, 5),
(340, 25), wx.ALIGN_CENTRE)
self.label.SetFont(wx.Font(12, wx.DEFAULT, wx.ITALIC, wx.BOLD))
elif (platform.system() == "Darwin"):
self.label = wx.StaticBitmap(
self,
-1,
wx.Image(
self.parent.scriptdir + "/images/osx/lblProtocols.png",
wx.BITMAP_TYPE_PNG).ConvertToBitmap(),
pos=(5, 5),
size=(340, 25))
else:
self.label = wx.StaticText(self,
-1,
"Protocols",
style=wx.ALIGN_CENTRE)
self.label.SetFont(wx.Font(12, wx.DEFAULT, wx.ITALIC, wx.BOLD))
resizeTextControlForUNIX(self.label, 0, self.GetSize()[0])
self.label.SetForegroundColour("#FFFFFF")
self.protocols = [
"Docking", "Energy Minimization", "Ensemble Browser",
"Ensemble Generation", "Loop Modeling (KIC)", "Molecular Surfaces",
"Point Mutant Scan", "Point Mutations", "Protein Design (Fixbb)",
"Protein Design (MSD)", "Residue/Ligand Creator", "Superimposition"
]
if (platform.system() == "Darwin"):
self.protMenu = wx.ComboBox(self,
pos=(5, 30),
size=(230, 25),
choices=self.protocols,
style=wx.CB_READONLY)
else:
self.protMenu = wx.ComboBox(self,
pos=(5, 30),
size=(230, 25),
choices=self.protocols,
style=wx.CB_READONLY | wx.CB_SORT)
self.protMenu.SetSelection(self.protocols.index("Superimposition"))
self.protMenu.SetToolTipString("List of currently available protocols")
if (platform.system() == "Darwin"):
self.GoBtn = wx.BitmapButton(
self,
id=-1,
bitmap=wx.Image(
self.parent.scriptdir + "/images/osx/GoBtn.png",
wx.BITMAP_TYPE_PNG).ConvertToBitmap(),
pos=(240, 30),
size=(100, 25))
else:
self.GoBtn = wx.Button(self,
id=-1,
label="Go!",
pos=(240, 30),
size=(100, 25))
self.GoBtn.SetForegroundColour("#000000")
self.GoBtn.SetFont(wx.Font(10, wx.DEFAULT, wx.NORMAL, wx.BOLD))
self.GoBtn.Bind(wx.EVT_BUTTON, self.changeProtocol)
self.GoBtn.SetToolTipString("Change to the selected protocol")
self.currentProtocol = "Superimposition"
self.protPanel = SuperimpositionPanel(self, W, H)
