def get_ardis_dataset():
# load the data from csv's
ardis_images=np.loadtxt('./data/ARDIS/ARDIS_train_2828.csv', dtype='float')
ardis_labels=np.loadtxt('./data/ARDIS/ARDIS_train_labels.csv', dtype='float')
#### reshape to be [samples][width][height]
ardis_images = ardis_images.reshape(ardis_images.shape[0], 28, 28).astype('float32')
# labels are one-hot encoded
indices_seven = np.where(ardis_labels[:,7] == 1)[0]
images_seven = ardis_images[indices_seven,:]
images_seven = torch.tensor(images_seven).type(torch.uint8)
labels_seven = torch.tensor([7 for y in ardis_labels])
ardis_dataset = EMNIST('./data', split="digits", train=True, download=True,
transform=transforms.Compose([
transforms.ToTensor(),
transforms.Normalize((0.1307,), (0.3081,))
]))
ardis_dataset.data = images_seven
ardis_dataset.targets = labels_seven
return ardis_dataset
def get_single_task(dataroot, task):
tf = transforms.ToTensor()
if task.startswith('EMNIST'):
split = task.split('/', maxsplit=2)[1]
dataroot = join(dataroot, 'emnist')
tf_target = (lambda x: x - 1) if split == 'letters' else None
output_size = 26 if split == 'letters' else 10
trainset = EMNIST(dataroot,
split=split,
train=True,
transform=tf,
target_transform=tf_target)
trainset = stratified_subset(trainset, trainset.targets.tolist(), 500)
testset = EMNIST(dataroot,
split=split,
train=False,
transform=tf,
target_transform=tf_target)
elif task == 'KMNIST':
dataroot = join(dataroot, 'kmnist')
output_size = 10
trainset = KMNIST(dataroot, train=True, transform=tf)
trainset = stratified_subset(trainset, trainset.targets.tolist(), 500)
testset = KMNIST(dataroot, train=False, transform=tf)
else:
raise ValueError(task)
return trainset, testset, output_size
def emnist_flat(split, batch_size, dev):
kwargs = {} if dev == torch.device('cpu') \
else { 'num_workers': 4, 'pin_memory': True }
train = EMNIST(EMNIST_ROOT, split, train=True, download=True, transform=flat_transform)
test = EMNIST(EMNIST_ROOT, split, train=False, download=True, transform=flat_transform)
train_loader = DataLoader(train, batch_size=batch_size, shuffle=True, **kwargs)
test_loader = DataLoader(test, batch_size=batch_size, **kwargs)
return train_loader, test_loader
def main(args):
device = torch.device("cpu" if args.gpu < 0 else "cuda:" + str(args.gpu))
# create the dataset
transform = transforms.Compose([transforms.ToTensor()])
if args.mode == 'train':
train_dataset = EMNIST(root='./data',
split='mnist',
train=True,
download=True,
transform=transform)
# train_dataset, _ = train_test_split(train_dataset, train_size=int(0.1*len(train_dataset)))
train_dataloader = DataLoader(train_dataset,
batch_size=args.batch_size,
shuffle=True)
if args.mode != 'custom_mnist':
test_dataset = EMNIST(root='./data',
split='mnist',
train=False,
download=True,
transform=transform)
if args.mode == 'custom_mnist':
custom_transform = transforms.Compose([
lambda x: np.asarray(x),
lambda x: cv2.cvtColor(255 - x, cv2.COLOR_RGB2GRAY),
lambda x: cv2.GaussianBlur(x, (3, 3), 1), lambda x: get_roi(x),
transforms.ToTensor(),
transforms.Resize((28, 28)), lambda x: torch.transpose(x, 1, 2)
])
test_dataset = ImageFolder('./data/CustomMNIST',
transform=custom_transform)
test_dataloader = DataLoader(test_dataset,
batch_size=args.batch_size,
shuffle=True)
n_classes = len(test_dataset.classes)
# create the model, loss function and optimizer
model = MNISTClassifier(n_classes).to(device)
loss_fcn = nn.CrossEntropyLoss()
optimizer = torch.optim.Adam(model.parameters(), lr=args.lr)
# train and test
if args.mode == "train":
train(model, loss_fcn, device, optimizer, train_dataloader,
test_dataloader, args)
torch.save(model.state_dict(), MODEL_STATE_FILE)
model.load_state_dict(torch.load(MODEL_STATE_FILE))
if args.mode != 'train':
visualization_dataset64, _ = train_test_split(test_dataset,
train_size=64)
visualize_predictions(model, visualization_dataset64, device)
return test(model, loss_fcn, device, test_dataloader)
def get_datasets(split='balanced', save=False):
download_folder = './data'
transform = Compose([ToTensor()])
dataset = ConcatDataset([
EMNIST(root=download_folder,
split=split,
download=True,
train=False,
transform=transform),
EMNIST(root=download_folder,
split=split,
download=True,
train=True,
transform=transform)
])
# Ignore the code below with argument 'save'
if save:
random_seed = 4211 # do not change
n_samples = len(dataset)
eval_size = 0.2
indices = list(range(n_samples))
split = int(np.floor(eval_size * n_samples))
np.random.seed(random_seed)
np.random.shuffle(indices)
train_indices, eval_indices = indices[split:], indices[:split]
# cut to half
train_indices = train_indices[:len(train_indices) // 2]
eval_indices = eval_indices[:len(eval_indices) // 2]
np.savez('train_test_split.npz',
train=train_indices,
test=eval_indices)
# just use save=False for students
# load train test split indices
else:
with np.load('./train_test_split.npz') as f:
train_indices = f['train']
eval_indices = f['test']
train_dataset = Subset(dataset, indices=train_indices)
eval_dataset = Subset(dataset, indices=eval_indices)
return train_dataset, eval_dataset
def letters(root):
from torchvision.datasets import EMNIST
transform = transforms.Compose([
lambda x: x.convert("RGB"),
transforms.Resize(224),
transforms.ToTensor(),
# transforms.Normalize((0.5, 0.5, 0.5), (1., 1., 1.)),
])
trainset = EMNIST(root,
train=True,
split='letters',
transform=transform,
download=True)
testset = EMNIST(root, train=False, split='letters', transform=transform)
return trainset, testset
def get_dataloaders_using_pytorch():
# download dataset
root = '../data/emnist_pthdata'
# transforms for train and test
train_transform = transforms.Compose([
transforms.RandomHorizontalFlip(),
transforms.RandomAffine(degrees=10,
translate=(0.2, 0.2),
scale=(0.8, 1.2)),
transforms.ToTensor(),
transforms.Normalize(mean=[0.5], std=[0.5])
])
test_transform = transforms.Compose(
[transforms.ToTensor(),
transforms.Normalize(mean=[0.5], std=[0.5])])
train_dataset = EMNIST(root=root,
split='balanced',
download=True,
train=True,
transform=train_transform)
test_dataset = EMNIST(root=root,
split='balanced',
download=True,
train=False,
transform=test_transform)
train_loader = DataLoader(dataset=train_dataset,
batch_size=192,
drop_last=True,
sampler=ImbalancedDatasetSampler(train_dataset))
test_loader = DataLoader(dataset=test_dataset,
shuffle=False,
batch_size=64)
return train_loader, test_loader
def get_emnist_data(transform=None, RGB=True):
"""Returns EMNIST train and test datasets.
This function is assumed to be primarily used as seed data.
DataLoaders and data splits are in synthesis.py
Parameters:
transform: Relevant Torchvision transforms to apply to EMNIST
RGB: A boolean value that decides if the images are RGB
Returns:
Two Torchvision datasets with the EMNIST train and test sets
"""
if transform is None and (RGB is True):
transform = transforms.Compose([
transforms.Lambda(lambda image: image.convert("RGB")),
transforms.ToTensor(),
transforms.Normalize((0.1307, ), (0.3081, )),
])
elif transform is None and (RGB is False):
transforms.Compose([
transforms.ToTensor(),
transforms.Normalize((0.1307, ), (0.3081, ))
])
emnist_train = EMNIST(os.getcwd(),
split="digits",
train=True,
download=True,
transform=transform)
emnist_test = EMNIST(os.getcwd(),
split="digits",
train=False,
download=True,
transform=transform)
return emnist_train, emnist_test
def get_test_loader(self, filename=None):
dataset = EMNIST(os.path.join(datasets_path, 'emnist'),
split='balanced',
download=True,
train=False)
def transform(x):
return torch.bernoulli(x.unsqueeze(-3).float().div(255))
filename = self.testfile if filename is None else filename
classes = torch.arange(20, 47) if self.novel else None
return get_saved_data_loader(dataset,
filename,
TEST_NUM_PER_CLASS,
transform=transform,
classes=classes)
def __build_truncated_dataset__(self):
emnist_dataobj = EMNIST(self.root, split="digits", train=self.train,
transform=self.transform,
target_transform=self.target_transform,
download=self.download)
if self.train:
data = emnist_dataobj.train_data
target = emnist_dataobj.train_labels
else:
data = emnist_dataobj.test_data
target = emnist_dataobj.test_labels
if self.dataidxs is not None:
data = data[self.dataidxs]
target = target[self.dataidxs]
return data, target
def get_train_loader(self):
dataset = EMNIST(os.path.join(datasets_path, 'emnist'),
split='balanced',
download=True,
train=True)
def transform(x):
return torch.bernoulli(x.unsqueeze(-3).float().div(255))
classes = torch.arange(20) if self.novel else None
return get_random_data_loader(dataset,
self.B,
self.N,
self.K,
self.num_steps,
TRAIN_NUM_PER_CLASS,
transform=transform,
classes=classes)
def load_or_generate_data(self) -> None:
"""Fetch the EMNIST dataset."""
dataset = EMNIST(
root=DATA_DIRNAME,
split="byclass",
train=self.train,
download=False,
transform=None,
target_transform=None,
)
self._data = dataset.data
self._targets = dataset.targets
if self.sample_to_balance:
self._sample_to_balance()
if self.subsample_fraction is not None:
self._subsample()
def load_dataset(data_transforms,
batch_size=1024,
num_workers=0,
root=DATA_ROOT,
split='digits'):
datasets = {}
for name in ('train', 'valid'):
is_training = name == 'train'
dataset = EMNIST(root=root,
split=split,
train=is_training,
download=True,
transform=data_transforms[name])
loader = DataLoader(dataset,
batch_size=batch_size,
num_workers=num_workers)
datasets[name] = {'dataset': dataset, 'loader': loader}
return datasets
def __init__(self, letters, n_cap):
"""
Create a data object to house aspects of the data
:param letters: a tuple of the English letters wanting to plot
:param n_cap: capped observations
"""
self.letters = letters
# Required PyTorch transform for this project
transform = transforms.Compose([
transforms.ToTensor(),
transforms.Normalize((0.5, 0.5, 0.5), (0.5, 0.5, 0.5))
])
# Fetch the dataset
self.emnist = EMNIST(root="./data", split='bymerge', download=True)
# Split
self.data_ind, self.targ, self.flat_X, self.labels, self.X = self.filter_by_label(
n_cap)
def __build_truncated_dataset__(self):
emnist_dataobj = EMNIST(self.root, split="digits", train=self.train,
transform=self.transform,
target_transform=self.target_transform,
download=self.download)
if self.train:
data = emnist_dataobj.data
target = np.array(emnist_dataobj.targets)
else:
data = emnist_dataobj.data
target = np.array(emnist_dataobj.targets)
if self.dataidxs is not None:
data = data[self.dataidxs]
target = target[self.dataidxs]
data = np.append(data, self.saved_ardis_dataset_train, axis=0)
target = np.append(target, self.saved_ardis_label_train, axis=0)
return data, target
def sample(self, B, N, K, **kwargs):
dataset = EMNIST(os.path.join(datasets_path, 'emnist'),
split='balanced',
download=True,
train=False)
def transform(x):
return torch.bernoulli(x.unsqueeze(-3).float().div(255))
loader = get_random_data_loader(
dataset,
B,
N,
K,
1,
TEST_NUM_PER_CLASS,
transform=transform,
classes=(torch.arange(20, 47) if self.novel else None),
transform=transform,
**kwargs)
return next(iter(loader))
def main():
# Training settings
parser = argparse.ArgumentParser(
description='run approximation to LeNet on Mnist')
parser.add_argument('--batch-size',
type=int,
default=512,
metavar='N',
help='input batch size for training (default: 64)')
parser.add_argument('--test-batch-size',
type=int,
default=64,
metavar='N',
help='input batch size for testing (default: 1000)')
parser.add_argument('--approx-epochs',
type=int,
default=200,
metavar='N',
help='number of epochs to approx (default: 10)')
parser.add_argument('--lr',
type=float,
default=1e-2,
metavar='LR',
help='learning rate (default: 0.0005)')
parser.add_argument('--momentum',
type=float,
default=0.5,
metavar='M',
help='SGD momentum (default: 0.5)')
parser.add_argument('--no-cuda',
action='store_true',
default=False,
help='disables CUDA training')
parser.add_argument('--seed',
type=int,
default=1,
metavar='S',
help='random seed (default: 1)')
parser.add_argument(
'--log-interval',
type=int,
default=10,
metavar='N',
help='how many batches to wait before logging training status')
parser.add_argument('--dropout-rate',
type=float,
default=0.5,
metavar='p_drop',
help='dropout rate')
parser.add_argument(
'--S',
type=int,
default=100,
metavar='N',
help='number of posterior samples from the Bayesian model')
parser.add_argument(
'--model-path',
type=str,
default='../saved_models/emnist_mcdp/',
help='number of posterior samples from the Bayesian model')
parser.add_argument('--save-approx-model',
type=int,
default=0,
metavar='N',
help='save approx model or not? default not')
parser.add_argument('--from-approx-model',
type=int,
default=1,
metavar='N',
help='if our model is loaded or trained')
parser.add_argument('--test-ood-from-disk',
type=int,
default=1,
help='generate test samples or load from disk')
args = parser.parse_args()
use_cuda = not args.no_cuda and torch.cuda.is_available()
torch.manual_seed(args.seed)
device = torch.device("cuda" if use_cuda else "cpu")
kwargs = {'num_workers': 8, 'pin_memory': False} if use_cuda else {}
tr_data = EMNIST(
'../../data',
split='balanced',
train=True,
transform=transforms.Compose([
# transforms.ToPILImage(),
transforms.Resize((28, 28)),
transforms.ToTensor(),
transforms.Normalize((0.5, ), (0.5, ))
]),
download=True)
te_data = EMNIST(
'../../data',
split='balanced',
train=False,
transform=transforms.Compose([
# transforms.ToPILImage(),
transforms.Resize((28, 28)),
transforms.ToTensor(),
transforms.Normalize((0.5, ), (0.5, ))
]),
download=True)
ood_data = datasets.Omniglot('../data',
download=True,
transform=transforms.Compose([
transforms.Resize((28, 28)),
transforms.ToTensor(),
transforms.Normalize((0.5, ), (0.5, )),
]))
train_loader = torch.utils.data.DataLoader(tr_data,
batch_size=args.batch_size,
shuffle=False,
**kwargs)
test_loader = torch.utils.data.DataLoader(te_data,
batch_size=args.batch_size,
shuffle=False,
**kwargs)
ood_loader = torch.utils.data.DataLoader(ood_data,
batch_size=args.batch_size,
shuffle=False,
**kwargs)
model = mnist_net().to(device)
model.load_state_dict(torch.load(args.model_path + 'mcdp-emnist.pt'))
test(args, model, device, test_loader)
if args.from_approx_model == 0:
output_samples = torch.load(args.model_path + 'emnist-mcdp-samples.pt')
# --------------- training approx ---------
print('approximating ...')
fmodel = mnist_net_f().to(device)
gmodel = mnist_net_g().to(device)
if args.from_approx_model == 0:
g_optimizer = optim.SGD(gmodel.parameters(),
lr=args.lr,
momentum=args.momentum)
f_optimizer = optim.SGD(fmodel.parameters(),
lr=args.lr,
momentum=args.momentum)
best_acc = 0
for epoch in range(1, args.approx_epochs + 1):
train_approx(args, fmodel, gmodel, device, train_loader,
f_optimizer, g_optimizer, output_samples, epoch)
acc = test(args, fmodel, device, test_loader)
if acc > best_acc:
torch.save(fmodel.state_dict(),
args.model_path + 'mcdp-emnist-mean-emd.pt')
torch.save(gmodel.state_dict(),
args.model_path + 'mcdp-emnist-conc-emd.pt')
best_acc = acc
else:
fmodel.load_state_dict(
torch.load(args.model_path + 'mcdp-emnist-mean-emd.pt'))
gmodel.load_state_dict(
torch.load(args.model_path + 'mcdp-emnist-conc-emd.pt'))
print('generating teacher particles for testing&ood data ...')
# generate particles for test and ood dataset
model.train()
if args.test_ood_from_disk == 1:
teacher_test_samples = torch.load(args.model_path +
'emnist-mcdp-test-samples.pt')
else:
with torch.no_grad():
# obtain ensemble outputs
all_samples = []
for i in range(500):
samples_a_round = []
for data, target in test_loader:
data = data.to(device)
output = F.softmax(model(data))
samples_a_round.append(output)
samples_a_round = torch.cat(samples_a_round).cpu()
all_samples.append(samples_a_round)
teacher_test_samples = torch.stack(all_samples).permute(1, 0, 2)
torch.save(all_samples,
args.model_path + 'emnist-mcdp-test-samples.pt')
if args.test_ood_from_disk == 1:
teacher_ood_samples = torch.load(
args.model_path + 'omniglot-mcdp-ood-samples-trd-emnist.pt')
else:
with torch.no_grad():
# obtain ensemble outputs
all_samples = []
for i in range(500):
samples_a_round = []
for data, target in ood_loader:
data = data.to(device)
output = F.softmax(model(data))
samples_a_round.append(output)
samples_a_round = torch.cat(samples_a_round).cpu()
all_samples.append(samples_a_round)
teacher_ood_samples = torch.stack(all_samples).permute(1, 0, 2)
torch.save(
all_samples,
args.model_path + 'omniglot-mcdp-ood-samples-trd-emnist.pt')
eval_approx(args, fmodel, gmodel, device, test_loader, ood_loader,
teacher_test_samples, teacher_ood_samples)
def get_loader(dataset, path, bsz, cifar_c_type=None):
if dataset == 'cifar':
mean = (0.4914, 0.4822, 0.4465)
std = (0.2023, 0.1944, 0.2010)
train_transform = transforms.Compose(
[transforms.ToTensor(),
transforms.Normalize(mean=mean, std=std)])
cifar_dataset = datasets.CIFAR10(root=path,
train=True,
download=True,
transform=train_transform)
num_train = len(cifar_dataset)
indices = torch.randperm(num_train).tolist()
valid_size = 2048
train_idx, valid_idx = indices[valid_size:], indices[:valid_size]
train_dataset = data.Subset(cifar_dataset, train_idx)
valid_dataset = data.Subset(cifar_dataset, valid_idx)
train_loader = data.DataLoader(train_dataset,
batch_size=bsz,
shuffle=True,
drop_last=True)
valid_loader = data.DataLoader(valid_dataset,
batch_size=2000,
shuffle=True)
return (train_loader, valid_loader)
elif dataset == 'cifar_c':
mean = (0.4914, 0.4822, 0.4465)
std = (0.2023, 0.1944, 0.2010)
train_transform = transforms.Compose(
[transforms.ToTensor(),
transforms.Normalize(mean=mean, std=std)])
cifar_c = CIFAR10_C(path,
c_type=cifar_c_type,
transform=train_transform)
valid_c_loader = data.DataLoader(cifar_c,
batch_size=500,
shuffle=False)
return valid_c_loader
elif dataset == 'mnist':
train_transform = transforms.Compose([
transforms.ToTensor(),
transforms.Normalize(mean=0.1307, std=0.3081)
])
mnist_dataset = MNIST(root=path, transform=train_transform)
num_train = len(mnist_dataset)
indices = torch.randperm(num_train).tolist()
valid_size = 2048
train_idx, valid_idx = indices[valid_size:], indices[:valid_size]
train_dataset = data.Subset(mnist_dataset, train_idx)
valid_dataset = data.Subset(mnist_dataset, valid_idx)
train_loader = data.DataLoader(train_dataset,
batch_size=bsz,
shuffle=True,
drop_last=True)
valid_loader = data.DataLoader(valid_dataset,
batch_size=2000,
shuffle=True,
drop_last=True)
return (train_loader, valid_loader)
elif dataset == 'mnist_r':
rot = [15, 30, 45, 60, 75]
rot_loader = []
for i in range(5):
rotation = transforms.Compose([
transforms.RandomRotation(degrees=(rot[i], rot[i])),
transforms.ToTensor(),
transforms.Normalize(mean=0.1307, std=0.3081)
])
rotation_dataset = MNIST(root=path, transform=rotation)
rot_loader.append(
data.DataLoader(rotation_dataset,
batch_size=500,
shuffle=False))
return rot_loader
elif dataset == 'svhn':
mean = (0.4914, 0.4822, 0.4465)
std = (0.2023, 0.1944, 0.2010)
train_transform = transforms.Compose(
[transforms.ToTensor(),
transforms.Normalize(mean=mean, std=std)])
svhn_dataset = SVHN(path, download=True, transform=train_transform)
svhn_loader = data.DataLoader(dataset=svhn_dataset,
batch_size=500,
shuffle=True)
return svhn_loader
elif dataset == 'lsun':
mean = (0.4914, 0.4822, 0.4465)
std = (0.2023, 0.1944, 0.2010)
train_transform = transforms.Compose(
[transforms.ToTensor(),
transforms.Normalize(mean=mean, std=std)])
lsun_dataset = LSUN(path, transform=train_transform)
lsun_loader = data.DataLoader(dataset=lsun_dataset,
batch_size=500,
shuffle=True)
return lsun_loader
elif dataset == 'tiny':
mean = (0.4914, 0.4822, 0.4465)
std = (0.2023, 0.1944, 0.2010)
train_transform = transforms.Compose(
[transforms.ToTensor(),
transforms.Normalize(mean=mean, std=std)])
tiny_dataset = TINY(path, transform=train_transform)
tiny_loader = data.DataLoader(dataset=tiny_dataset,
batch_size=500,
shuffle=True)
return tiny_loader
elif dataset == 'fmnist':
train_transform = transforms.Compose([
transforms.ToTensor(),
transforms.Normalize(mean=0.1307, std=0.3081)
])
fmnist_dataset = FashionMNIST(root=path,
train=True,
download=True,
transform=train_transform)
fmnist_loader = data.DataLoader(dataset=fmnist_dataset, batch_size=500)
return fmnist_loader
elif dataset == 'emnist':
train_transform = transforms.Compose([
transforms.ToTensor(),
transforms.Normalize(mean=0.1307, std=0.3081)
])
emnist_dataset = EMNIST(root=path,
train=True,
split='letters',
download=True,
transform=train_transform)
emnist_loader = data.DataLoader(dataset=emnist_dataset, batch_size=500)
return emnist_loader
elif dataset == 'nmnist':
train_transform = transforms.Compose([
transforms.ToTensor(),
transforms.Normalize(mean=0.1307, std=0.3081)
])
nmnist_dataset = ImageFolder(root=path, transform=train_transform)
nmnist_loader = data.DataLoader(dataset=nmnist_dataset, batch_size=500)
return nmnist_loader
import os
import torch
import torch.nn as nn
import torch.nn.functional as F
from torchvision.datasets import EMNIST
from experiments import ROOT_DIR
dataset = EMNIST(os.path.join(ROOT_DIR, 'data', 'EMNIST'),
split='letters',
train=True,
download=True)
class CNN(nn.Module):
def __init__(self):
super().__init__()
self.conv1 = nn.Conv2d(in_channels=1,
out_channels=32,
kernel_size=5,
stride=1)
self.mp1 = nn.MaxPool2d(kernel_size=2)
self.conv2 = nn.Conv2d(in_channels=32,
out_channels=64,
kernel_size=3,
stride=1)
self.mp2 = nn.MaxPool2d(kernel_size=2)
def forward(self, x):
def main():
# Training settings
parser = argparse.ArgumentParser(
description='Training MCDP Bayes teacher and sampling')
parser.add_argument('--batch-size',
type=int,
default=256,
metavar='N',
help='input batch size for training (default: 64)')
parser.add_argument('--test-batch-size',
type=int,
default=100,
metavar='N',
help='input batch size for testing (default: 1000)')
parser.add_argument('--epochs',
type=int,
default=300,
metavar='N',
help='number of epochs to train (default: 10)')
parser.add_argument('--lr',
type=float,
default=0.01,
metavar='LR',
help='learning rate (default: 0.0005)')
parser.add_argument('--momentum',
type=float,
default=0.5,
metavar='M',
help='SGD momentum (default: 0.5)')
parser.add_argument('--no-cuda',
action='store_true',
default=False,
help='disables CUDA training')
parser.add_argument('--seed',
type=int,
default=1,
metavar='S',
help='random seed (default: 1)')
parser.add_argument(
'--log-interval',
type=int,
default=10,
metavar='N',
help='how many batches to wait before logging training status')
parser.add_argument('--dropout-rate',
type=float,
default=0.5,
metavar='p_drop',
help='dropout rate')
parser.add_argument('--S',
type=int,
default=500,
metavar='N',
help='number of posterior samples')
parser.add_argument(
'--model-path',
type=str,
default='../saved_models/emnist_mcdp/',
metavar='N',
help='number of posterior samples from the Bayesian model')
parser.add_argument('--from-model',
type=int,
default=1,
metavar='N',
help='if our model is loaded or trained')
args = parser.parse_args()
use_cuda = not args.no_cuda and torch.cuda.is_available()
torch.manual_seed(args.seed)
device = torch.device("cuda" if use_cuda else "cpu")
kwargs = {'num_workers': 8, 'pin_memory': True} if use_cuda else {}
tr_data = EMNIST('../data',
split='balanced',
train=True,
transform=transforms.Compose([
transforms.Resize((28, 28)),
transforms.ToTensor(),
transforms.Normalize((0.5, ), (0.5, ))
]),
download=True)
te_data = EMNIST('../data',
split='balanced',
train=False,
transform=transforms.Compose([
transforms.Resize((28, 28)),
transforms.ToTensor(),
transforms.Normalize((0.5, ), (0.5, ))
]),
download=True)
train_loader = torch.utils.data.DataLoader(tr_data,
batch_size=args.batch_size,
shuffle=True,
**kwargs)
test_loader = torch.utils.data.DataLoader(te_data,
batch_size=args.batch_size,
shuffle=True,
**kwargs)
model = mnist_net().to(device)
optimizer = torch.optim.SGD(model.parameters(),
lr=args.lr,
momentum=args.momentum)
# --------------- train or load teacher -----------
if args.from_model == 1:
print('loading teacher model ...')
model.load_state_dict(torch.load(args.model_path + 'mcdp-emnist.pt'))
else:
print('training teacher model ...')
schedule = [50, 100, 150, 200, 250]
best = 0
for epoch in range(1, args.epochs + 1):
if epoch in schedule:
for g in optimizer.param_groups:
g['lr'] *= 0.5
train_bayesian(args, model, device, train_loader, optimizer, epoch)
print("teacher training epoch: {}".format(epoch))
test_acc = test(args, model, device, test_loader)
if test_acc > best:
torch.save(model.state_dict(),
args.model_path + 'mcdp-emnist.pt')
best = test_acc
train_loader = torch.utils.data.DataLoader(tr_data,
batch_size=args.batch_size,
shuffle=False,
**kwargs)
print('generating particles for training data ...')
# for an easier training of amortized approximation,
# instead of sampling param. during approx,
# get particles on simplex and store them first.
with torch.no_grad():
all_samples = []
for i in range(500):
samples_a_round = []
for data, target in train_loader:
data = data.to(device)
output = F.softmax(model(data))
samples_a_round.append(output)
samples_a_round = torch.cat(samples_a_round).cpu()
all_samples.append(samples_a_round)
all_samples = torch.stack(all_samples).permute(1, 0, 2)
torch.save(all_samples, args.model_path + 'emnist-mcdp-samples.pt')
def main(seed=0,
n_neurons=100,
n_train=60000,
n_test=10000,
inhib=100,
lr=1e-2,
lr_decay=1,
time=350,
dt=1,
theta_plus=0.05,
theta_decay=1e-7,
intensity=1,
progress_interval=10,
update_interval=250,
plot=False,
train=True,
gpu=False):
assert n_train % update_interval == 0 and n_test % update_interval == 0, \
'No. examples must be divisible by update_interval'
params = [
seed, n_neurons, n_train, inhib, lr, lr_decay, time, dt, theta_plus,
theta_decay, intensity, progress_interval, update_interval
]
test_params = [
seed, n_neurons, n_train, n_test, inhib, lr, lr_decay, time, dt,
theta_plus, theta_decay, intensity, progress_interval, update_interval
]
model_name = '_'.join([str(x) for x in params])
np.random.seed(seed)
if gpu:
torch.set_default_tensor_type('torch.cuda.FloatTensor')
torch.cuda.manual_seed_all(seed)
else:
torch.manual_seed(seed)
n_examples = n_train if train else n_test
n_sqrt = int(np.ceil(np.sqrt(n_neurons)))
n_classes = 26
# Build network.
if train:
network = DiehlAndCook2015v2(n_inpt=784,
n_neurons=n_neurons,
inh=inhib,
dt=dt,
norm=78.4,
theta_plus=theta_plus,
theta_decay=theta_decay,
nu=[0, lr])
else:
network = load_network(os.path.join(params_path, model_name + '.pt'))
network.connections['X', 'Y'].update_rule = NoOp(
connection=network.connections['X', 'Y'],
nu=network.connections['X', 'Y'].nu)
network.layers['Y'].theta_decay = 0
network.layers['Y'].theta_plus = 0
# Load EMNIST data.
dataset = EMNIST(root=data_path,
split='letters',
train=train,
download=True)
if train:
images = dataset.train_data.float()
labels = dataset.train_labels.long()
else:
images = dataset.test_data.float()
labels = dataset.test_labels.long()
if gpu:
images = images.cuda()
labels = labels.cuda()
permutation = torch.randperm(images.size(0))
images = images[permutation]
labels = labels[permutation]
images = images.view(-1, 784)
images *= intensity
labels -= 1
# Record spikes during the simulation.
spike_record = torch.zeros(update_interval, time, n_neurons)
# Neuron assignments and spike proportions.
if train:
assignments = -torch.ones_like(torch.Tensor(n_neurons))
proportions = torch.zeros_like(torch.Tensor(n_neurons, n_classes))
rates = torch.zeros_like(torch.Tensor(n_neurons, n_classes))
ngram_scores = {}
else:
path = os.path.join(params_path,
'_'.join(['auxiliary', model_name]) + '.pt')
assignments, proportions, rates, ngram_scores = torch.load(
open(path, 'rb'))
# Sequence of accuracy estimates.
curves = {'all': [], 'proportion': [], 'ngram': []}
predictions = {scheme: torch.Tensor().long() for scheme in curves.keys()}
if train:
best_accuracy = 0
spikes = {}
for layer in set(network.layers) - {'X'}:
spikes[layer] = Monitor(network.layers[layer],
state_vars=['s'],
time=time)
network.add_monitor(spikes[layer], name='%s_spikes' % layer)
# Train the network.
if train:
print('\nBegin training.\n')
else:
print('\nBegin test.\n')
inpt_axes = None
inpt_ims = None
spike_ims = None
spike_axes = None
weights_im = None
assigns_im = None
perf_ax = None
start = t()
for i in range(n_examples):
if i % progress_interval == 0:
print(f'Progress: {i} / {n_examples} ({t() - start:.4f} seconds)')
start = t()
if i % update_interval == 0 and i > 0:
if train:
network.connections['X', 'Y'].update_rule.nu[1] *= lr_decay
if i % len(labels) == 0:
current_labels = labels[-update_interval:]
else:
current_labels = labels[i % len(images) - update_interval:i %
len(images)]
# Update and print accuracy evaluations.
curves, preds = update_curves(curves,
current_labels,
n_classes,
spike_record=spike_record,
assignments=assignments,
proportions=proportions,
ngram_scores=ngram_scores,
n=2)
print_results(curves)
for scheme in preds:
predictions[scheme] = torch.cat(
[predictions[scheme], preds[scheme]], -1)
# Save accuracy curves to disk.
to_write = ['train'] + params if train else ['test'] + params
f = '_'.join([str(x) for x in to_write]) + '.pt'
torch.save((curves, update_interval, n_examples),
open(os.path.join(curves_path, f), 'wb'))
if train:
if any([x[-1] > best_accuracy for x in curves.values()]):
print(
'New best accuracy! Saving network parameters to disk.'
)
# Save network to disk.
network.save(os.path.join(params_path, model_name + '.pt'))
path = os.path.join(
params_path,
'_'.join(['auxiliary', model_name]) + '.pt')
torch.save((assignments, proportions, rates, ngram_scores),
open(path, 'wb'))
best_accuracy = max([x[-1] for x in curves.values()])
# Assign labels to excitatory layer neurons.
assignments, proportions, rates = assign_labels(
spike_record, current_labels, n_classes, rates)
# Compute ngram scores.
ngram_scores = update_ngram_scores(spike_record,
current_labels, n_classes,
2, ngram_scores)
print()
# Get next input sample.
image = images[i % len(images)]
sample = poisson(datum=image, time=time, dt=dt)
inpts = {'X': sample}
# Run the network on the input.
network.run(inpts=inpts, time=time)
retries = 0
while spikes['Y'].get('s').sum() < 5 and retries < 3:
retries += 1
image *= 2
sample = poisson(datum=image, time=time, dt=dt)
inpts = {'X': sample}
network.run(inpts=inpts, time=time)
# Add to spikes recording.
spike_record[i % update_interval] = spikes['Y'].get('s').t()
# Optionally plot various simulation information.
if plot:
# _input = image.view(28, 28)
# reconstruction = inpts['X'].view(time, 784).sum(0).view(28, 28)
_spikes = {layer: spikes[layer].get('s') for layer in spikes}
input_exc_weights = network.connections[('X', 'Y')].w
square_weights = get_square_weights(
input_exc_weights.view(784, n_neurons), n_sqrt, 28)
# square_assignments = get_square_assignments(assignments, n_sqrt)
# inpt_axes, inpt_ims = plot_input(_input, reconstruction, label=labels[i], axes=inpt_axes, ims=inpt_ims)
spike_ims, spike_axes = plot_spikes(_spikes,
ims=spike_ims,
axes=spike_axes)
weights_im = plot_weights(square_weights, im=weights_im)
# assigns_im = plot_assignments(square_assignments, im=assigns_im)
# perf_ax = plot_performance(curves, ax=perf_ax)
plt.pause(1e-8)
network.reset_() # Reset state variables.
print(f'Progress: {n_examples} / {n_examples} ({t() - start:.4f} seconds)')
i += 1
if i % len(labels) == 0:
current_labels = labels[-update_interval:]
else:
current_labels = labels[i % len(images) - update_interval:i %
len(images)]
# Update and print accuracy evaluations.
curves, preds = update_curves(curves,
current_labels,
n_classes,
spike_record=spike_record,
assignments=assignments,
proportions=proportions,
ngram_scores=ngram_scores,
n=2)
print_results(curves)
for scheme in preds:
predictions[scheme] = torch.cat([predictions[scheme], preds[scheme]],
-1)
if train:
if any([x[-1] > best_accuracy for x in curves.values()]):
print('New best accuracy! Saving network parameters to disk.')
# Save network to disk.
if train:
network.save(os.path.join(params_path, model_name + '.pt'))
path = os.path.join(
params_path, '_'.join(['auxiliary', model_name]) + '.pt')
torch.save((assignments, proportions, rates, ngram_scores),
open(path, 'wb'))
if train:
print('\nTraining complete.\n')
else:
print('\nTest complete.\n')
print('Average accuracies:\n')
for scheme in curves.keys():
print('\t%s: %.2f' % (scheme, float(np.mean(curves[scheme]))))
# Save accuracy curves to disk.
to_write = ['train'] + params if train else ['test'] + params
f = '_'.join([str(x) for x in to_write]) + '.pt'
torch.save((curves, update_interval, n_examples),
open(os.path.join(curves_path, f), 'wb'))
# Save results to disk.
results = [
np.mean(curves['all']),
np.mean(curves['proportion']),
np.mean(curves['ngram']),
np.max(curves['all']),
np.max(curves['proportion']),
np.max(curves['ngram'])
]
to_write = params + results if train else test_params + results
to_write = [str(x) for x in to_write]
name = 'train.csv' if train else 'test.csv'
if not os.path.isfile(os.path.join(results_path, name)):
with open(os.path.join(results_path, name), 'w') as f:
if train:
f.write(
'random_seed,n_neurons,n_train,inhib,lr,lr_decay,time,timestep,theta_plus,theta_decay,intensity,'
'progress_interval,update_interval,mean_all_activity,mean_proportion_weighting,'
'mean_ngram,max_all_activity,max_proportion_weighting,max_ngram\n'
)
else:
f.write(
'random_seed,n_neurons,n_train,n_test,inhib,lr,lr_decay,time,timestep,theta_plus,theta_decay,'
'intensity,progress_interval,update_interval,mean_all_activity,mean_proportion_weighting,'
'mean_ngram,max_all_activity,max_proportion_weighting,max_ngram\n'
)
with open(os.path.join(results_path, name), 'a') as f:
f.write(','.join(to_write) + '\n')
if labels.numel() > n_examples:
labels = labels[:n_examples]
else:
while labels.numel() < n_examples:
if 2 * labels.numel() > n_examples:
labels = torch.cat(
[labels, labels[:n_examples - labels.numel()]])
else:
labels = torch.cat([labels, labels])
# Compute confusion matrices and save them to disk.
confusions = {}
for scheme in predictions:
confusions[scheme] = confusion_matrix(labels, predictions[scheme])
to_write = ['train'] + params if train else ['test'] + test_params
f = '_'.join([str(x) for x in to_write]) + '.pt'
torch.save(confusions, os.path.join(confusion_path, f))
def select_dataset(dataset_name, input_dim=2, n_samples=10000):
"""
:params n_samples: number of points returned. If 0, all datapoints will be returned. For artificial data, it will throw an error.
"""
if dataset_name == 'fmnist':
f_mnist = FashionMNIST(root="./datasets", download=True)
data = f_mnist.data.numpy()
vec_data = np.reshape(data, (data.shape[0], -1))
vec_data = np.float32(vec_data)
labels = f_mnist.targets.numpy()
elif dataset_name == 'emnist':
f_mnist = EMNIST(root="./datasets", download=True, split='byclass')
data = f_mnist.data.numpy()
vec_data = np.reshape(data, (data.shape[0], -1))
vec_data = np.float32(vec_data)
labels = f_mnist.targets.numpy()
elif dataset_name == 'kmnist':
f_mnist = KMNIST(root="./datasets", download=True)
data = f_mnist.data.numpy()
vec_data = np.reshape(data, (data.shape[0], -1))
vec_data = np.float32(vec_data)
labels = f_mnist.targets.numpy()
elif dataset_name == 'usps':
f_mnist = USPS(root="./datasets", download=True)
data = f_mnist.data
vec_data = np.reshape(data, (data.shape[0], -1))
vec_data = np.float32(vec_data)
labels = np.float32(f_mnist.targets)
elif dataset_name == 'news':
newsgroups_train = fetch_20newsgroups(data_home='./datasets', subset='train',
remove=('headers', 'footers', 'quotes'))
vectorizer = TfidfVectorizer()
vec_data = vectorizer.fit_transform(newsgroups_train.data).toarray()
vec_data = np.float32(vec_data)
labels = newsgroups_train.target
labels = np.float32(labels)
elif dataset_name == 'cover_type':
file_name = file_path + "/datasets/covtype.data"
train_data = np.array(pd.read_csv(file_name, sep=','))
vec_data = np.float32(train_data[:, :-1])
labels = np.float32(train_data[:, -1])
elif dataset_name == 'char':
digits = datasets.load_digits()
n_samples = len(digits.images)
data = digits.images.reshape((n_samples, -1))
vec_data = np.float32(data)
labels = digits.target
elif dataset_name == 'charx':
file_name = file_path + "/datasets/char_x.npy"
data = np.load(file_name, allow_pickle=True)
vec_data, labels = data[0], data[1]
elif dataset_name == 'kdd_cup':
cover_train = fetch_kddcup99(data_home='./datasets', download_if_missing=True)
vec_data = cover_train.data
string_labels = cover_train.target
vec_data, labels = feature_tranformers.vectorizer_kdd(data=vec_data, labels=string_labels)
elif dataset_name == 'aggregation':
file_name = file_path + "/2d_data/Aggregation.csv"
a = np.array(pd.read_csv(file_name, sep=';'))
vec_data = a[:, 0:2]
labels = a[:, 2]
elif dataset_name == 'compound':
file_name = file_path + "/2d_data/Compound.txt"
a = np.array(pd.read_csv(file_name, sep='\t'))
vec_data = a[:, 0:2]
labels = a[:, 2]
elif dataset_name == 'd31':
file_name = file_path + "/2d_data/D31.txt"
a = np.array(pd.read_csv(file_name, sep='\t'))
vec_data = a[:, 0:2]
labels = a[:, 2]
elif dataset_name == 'flame':
file_name = file_path + "/2d_data/flame.txt"
a = np.array(pd.read_csv(file_name, sep='\t'))
vec_data = a[:, 0:2]
labels = a[:, 2]
elif dataset_name == 'path_based':
file_name = file_path + "/2d_data/pathbased.txt"
a = np.array(pd.read_csv(file_name, sep='\t'))
vec_data = a[:, 0:2]
labels = a[:, 2]
elif dataset_name == 'r15':
file_name = file_path + "/2d_data/R15.txt"
a = np.array(pd.read_csv(file_name, sep='\t'))
vec_data = a[:, 0:2]
labels = a[:, 2]
elif dataset_name == 'spiral':
file_name = file_path + "/2d_data/spiral.txt"
a = np.array(pd.read_csv(file_name, sep='\t'))
vec_data = a[:, 0:2]
labels = a[:, 2]
elif dataset_name == 'birch1':
file_name = file_path + "/2d_data/birch1.txt"
a = np.array(pd.read_csv(file_name, delimiter=r"\s+"))
vec_data = a[:, :]
labels = np.ones((vec_data.shape[0]))
elif dataset_name == 'birch2':
file_name = file_path + "/2d_data/birch2.txt"
a = np.array(pd.read_csv(file_name, delimiter=r"\s+"))
vec_data = a[:, :]
labels = np.ones((vec_data.shape[0]))
elif dataset_name == 'birch3':
file_name = file_path + "/2d_data/birch3.txt"
a = np.array(pd.read_csv(file_name, delimiter=r"\s+"))
vec_data = a[:, :]
labels = np.ones((vec_data.shape[0]))
elif dataset_name == 'worms':
file_name = file_path + "/2d_data/worms/worms_2d.txt"
a = np.array(pd.read_csv(file_name, sep=' '))
vec_data = a[:, :]
labels = np.ones((vec_data.shape[0]))
elif dataset_name == 't48k':
file_name = file_path + "/2d_data/t4.8k.txt"
a = np.array(pd.read_csv(file_name, sep=' '))
vec_data = a[1:, :]
labels = np.ones((vec_data.shape[0]))
elif dataset_name == 'moons':
data, labels = make_moons(n_samples=5000)
vec_data = np.float32(data)
labels = np.float32(labels)
elif dataset_name == 'circles':
data, labels = make_circles(n_samples=5000)
vec_data = np.float32(data)
labels = np.float32(labels)
elif dataset_name == 'blobs':
data, labels = make_blobs(n_samples=n_samples, centers=3)
vec_data = np.float32(data)
labels = np.float32(labels)
elif dataset_name == 'gmm':
mean_1 = np.zeros(input_dim)
mean_2 = 100 * np.ones(input_dim)
cov = np.eye(input_dim)
data_1 = np.random.multivariate_normal(mean_1, cov, int(n_samples / 2))
labels_1 = np.ones(int(n_samples / 2))
labels_2 = 2 * np.ones(int(n_samples / 2))
data_2 = np.random.multivariate_normal(mean_2, cov, int(n_samples / 2))
vec_data = np.concatenate([data_1, data_2], axis=0)
labels = np.concatenate([labels_1, labels_2], axis=0)
elif dataset_name == 'uniform':
vec_data = np.random.uniform(0, 1, size=(n_samples, input_dim)) * 10
labels = np.ones(n_samples)
elif dataset_name == 'mnist_pc':
d_mnist = MNIST(root="./datasets", download=True)
mnist = d_mnist.data.numpy()
data = np.float32(np.reshape(mnist, (mnist.shape[0], -1)))
pca_data = PCA(n_components=input_dim).fit_transform(data)
n_indices = np.random.randint(pca_data.shape[0], size=n_samples)
vec_data = pca_data[n_indices]
labels = d_mnist.targets.numpy()[n_indices]
elif dataset_name == 'usps_pc':
d_mnist = USPS(root="./datasets", download=True)
mnist = d_mnist.data
data = np.float32(np.reshape(mnist, (mnist.shape[0], -1)))
pca_data = PCA(n_components=input_dim).fit_transform(data)
n_indices = np.random.randint(pca_data.shape[0], size=n_samples)
vec_data = pca_data[n_indices]
labels = np.float32(d_mnist.targets)
elif dataset_name == 'char_pc':
digits = datasets.load_digits()
n_samples = len(digits.images)
data = digits.images.reshape((n_samples, -1))
data = np.float32(data)
targets = digits.target
pca_data = PCA(n_components=input_dim).fit_transform(data)
n_indices = np.random.randint(pca_data.shape[0], size=n_samples)
vec_data = pca_data[n_indices]
labels = targets
else:
d_mnist = MNIST(root="./datasets", download=True)
data = d_mnist.data.numpy()
vec_data = np.reshape(data, (data.shape[0], -1))
vec_data = np.float32(vec_data)
labels = d_mnist.targets.numpy()
if 0 < n_samples < vec_data.shape[0]:
rand_indices = np.random.choice(vec_data.shape[0], size=(n_samples,), replace=False)
return vec_data[rand_indices], labels[rand_indices]
else:
return vec_data, labels
def draw_accuracy_plot(train_accuracy, test_accuracy, epochs):
plt.plot(epochs, train_accuracy, label="train")
plt.plot(epochs, test_accuracy, label="test")
plt.xlabel('epochs')
plt.ylabel('accuracy')
plt.title('training / test accuracy')
plt.legend()
plt.show()
if args.dataset == 'MNIST':
train_data = MNIST('../data/MNIST', train=True, download=True)
test_data = MNIST('../data/MNIST', train=False, download=True)
if args.dataset == 'EMNIST':
train_data = EMNIST('../data/EMNIST',
split='balanced',
train=True,
download=True) # 47 balanced classes
test_data = EMNIST('../data/EMNIST',
split='balanced',
train=False,
download=True)
# split dataset into train and test according to hyperparam 'train_split'
total_classes = list(dict.fromkeys(train_data.train_labels.numpy()))
train_split = int(len(total_classes) * args.dataset_train_split)
labels_to_combine_train_dataset = random.sample(total_classes, k=train_split)
labels_to_combine_test_dataset = list(
set(total_classes) - set(labels_to_combine_train_dataset))
random.seed(22)
train_portion = int(len(total_classes) * (1 - args.test_data_portion))
filename = "./src/images/" + str(i) + "_" + str(j-examples +1 ) + ".npy"
img = np.load(filename)
image_i = 1 + i + columns * j
ax = fig.add_subplot(rows + examples, columns, image_i)
ax.axis("off")
ax.set_xticklabels([])
ax.set_yticklabels([])
ax.set_aspect('equal')
plt.imshow(img)
plt.subplots_adjust(wspace=0, hspace=0.1)
plt.show()
if __name__ == '__main__':
dataset = EMNIST('./data', train=True, download=True, split="byclass",
transform=transforms.Compose([
transforms.ToTensor(),
transforms.Normalize((0.1307,), (0.3081,))
]))
#viz = NLayerParameterVisualizator(dataset, list(range(2,10)))
viz = NLayerParameterVisualizator(dataset, list(range(2, 8)))
viz.sample_images()
#viz.train()
#viz.combine_images()
# 学習用モデルのインスタンスを生成します
model = MLP()
# -----------------------------------------------------------------------------
# 学習データの準備をします
#
print('---------- 学習のデータの準備 ----------')
data_folder = '~/data'
transform = transforms.Compose([
# データの型をTensorに変換する
transforms.ToTensor()
])
# 学習データ
train_data_with_labels = EMNIST(
data_folder, train=True, download=True, transform=transform, split='mnist')
train_data_loader = DataLoader(
train_data_with_labels, batch_size=BATCH_SIZE, shuffle=True)
# 検証データ
test_data_with_labels = EMNIST(
data_folder, train=False, download=True, transform=transform, split='mnist')
test_data_loader = DataLoader(
test_data_with_labels, batch_size=BATCH_SIZE, shuffle=True)
# -----------------------------------------------------------------------------
# 学習の用意をします
# 損失関数は交差エントロピー誤差関数を使います
lossResult = nn.CrossEntropyLoss()
# SGD
def download_emnist() -> None:
"""Download the EMNIST dataset via the PyTorch class."""
logger.info(f"Data directory is: {DATA_DIRNAME}")
dataset = EMNIST(root=DATA_DIRNAME, split="byclass", download=True)
save_emnist_essentials(dataset)
# Deep Dictionary Configurations
input_dim = 784 # the input dimensions to be expected
dd_layer_config = [784//2] # the layer configuration for the deep dictionary
sparse_cff = 1e-1 # regularization to enusure sparseness in the dictionary representation
epoch_per_level = 15 # the number of epochs to train for each layer of deep dictionary
# MLP Configurations
batch_size_train = 500 # the batch size of the MLP model (optimized via Adam)
batch_size_valid = 500
epoch_mlp = 25 # the number of epochs to train the MLP for
num_classes = 47 # the number of classes for classification (10 for MNIST)
mlp_lr = 5e-3 # the learning rate for the Adam optimizer to optimize the MLP model
# prepare data loaders
mnist_train_data = EMNIST('./data/', split='balanced', train=True, download=True, transform=transforms.Compose([transforms.ToTensor()]))
train_data, valid_data = torch.utils.data.random_split(mnist_train_data, [90240, 22560], generator=torch.Generator().manual_seed(0))
train_loader_dd = torch.utils.data.DataLoader(train_data, batch_size=len(train_data), shuffle=False, pin_memory=True)
train_loader_mlp = torch.utils.data.DataLoader(train_data, batch_size=batch_size_train, shuffle=True, pin_memory=True)
valid_loader_mlp = torch.utils.data.DataLoader(valid_data, batch_size=batch_size_valid, shuffle=True, pin_memory=True)
test_data = EMNIST('./data/', split='balanced', train=False, download=True, transform=transforms.Compose([transforms.ToTensor()]))
test_loader_mlp = torch.utils.data.DataLoader(test_data, batch_size=len(test_data), shuffle=True, pin_memory=True)
# Function Class
class Identity:
@staticmethod
def forward(x):
return x
def load_emnist(split, root=None, transform=None, target_transform=None, download=True):
root = root or Path("~/.learner/dataset").expanduser()
train_ds = EMNIST(root=root, split=split, train=True, download=download, transform=transform, target_transform=target_transform)
test_ds = EMNIST(root=root, split=split, train=False, download=download, transform=transform, target_transform=target_transform)
data = Data(train_ds, test_ds=test_ds, auto_split=True)
return data
from torchvision.datasets import EMNIST
from torch.utils.data import TensorDataset
from data.data_helpers import split_dataset, stratified_split_dataset
import properties as prop
import pwd, os
from data.data_helpers import split_dataset, concat_datasets
DATA_PATH = pwd.getpwuid(os.getuid()).pw_dir + '/time_series_data/eMNIST'
def transform_data(data):
data = data.unsqueeze(1).float().div(255)
return data
train_dataset = EMNIST(DATA_PATH, split='letters', train=True, download=True) # alternatives: letters, balanced
trainX, trainy = transform_data(train_dataset.data), (train_dataset.targets-1)
train_dataset = TensorDataset(trainX, trainy)
################ test dataset ################################
test_dataset = EMNIST(DATA_PATH, split='letters', train=False, download=True) # alternatives: letters, balanced
testX, testy = transform_data(test_dataset.data), (test_dataset.targets-1)
test_dataset = TensorDataset(testX, testy)
full_dataset = concat_datasets(train_dataset, test_dataset)
def get_data_splits():
def main():
## reproducibility
np.random.seed(0)
torch.manual_seed(0)
torch.cuda.manual_seed_all(0)
torch.backends.cudnn.deterministic = True
torch.backends.cudnn.benchmark = False
args = _parse_args()
dist.init_process_group(backend=args.distributed_backend,
init_method=args.distributed_init_method,
world_size=args.distributed_world_size,
rank=args.distributed_rank)
## data
if args.data_name == "CIFAR10":
transform = Compose([
ToTensor(),
Normalize((0.4914, 0.4822, 0.4465), (0.2470, 0.2435, 0.2616))
])
train_dataset = CIFAR10(args.data_root, transform=transform)
test_dataset = CIFAR10(args.data_root, transform=transform, train=False)
num_classes = 10
num_features = 32*32*3
elif args.data_name == "EMNIST":
# transform = Compose([ToTensor(), Normalize([0.1732], [0.3317])])
transform = ToTensor()
train_dataset = EMNIST(args.data_root, transform=transform,
split="digits")
test_dataset = EMNIST(args.data_root, transform=transform,
split="digits", train=False)
num_classes = 10
num_features = 28*28
else:
transform = Compose([ToTensor(), Normalize([0.1732], [0.3317])])
train_dataset = MNIST(args.data_root, transform=transform)
test_dataset = MNIST(args.data_root, transform=transform, train=False)
num_classes = 10
num_features = 28*28
train_sampler = DistributedSampler(train_dataset)
test_sampler = DistributedSampler(test_dataset, shuffle=False)
train_loader = DataLoader(train_dataset, batch_size=args.batch_size,
sampler=train_sampler,
num_workers=args.dataloader_num_workers)
test_loader = DataLoader(test_dataset, batch_size=args.batch_size,
sampler=test_sampler,
num_workers=args.dataloader_num_workers)
## model
device = torch.device("cuda" if args.use_cuda else "cpu")
dtype = torch.float64 if args.use_double_precision else torch.float32
d = num_features if args.model_name == "NLLS" else num_features*num_classes
weights = torch.zeros(d, device=device, dtype=dtype)
## run
header = ["iter", "ccr", "loss", "grad", "test", "alpha"]
print(("{:^16s}"*len(header)).format(*header))
iterations_list = []
communication_rounds_list = []
loss_list = []
grad_norm_list = []
test_val_list = []
step_size_list = []
communication_rounds = 0
iteration = 0
while communication_rounds < args.max_communication_rounds:
iterations_list.append(iteration)
communication_rounds_list.append(communication_rounds)
loss, grad, _ = _obj_fun(args.model_name, train_loader, weights, device,
dtype, comp_hess=False,
use_regularization=args.use_regularization)
loss_list.append(loss)
grad_norm_list.append(grad.norm().item())
test_val = _get_test_val(args.model_name, test_loader, weights, device,
dtype)
test_val_list.append(test_val.item())
update_direction = _get_update_direction(args.model_name, train_loader,
weights, device, dtype, grad,
args.phi, args.theta,
args.use_exact_solve,
args.subproblem_tol,
args.subproblem_max_iter,
args.use_regularization)
step_size = _get_step_size(args.model_name, train_loader, weights,
device, dtype, loss, grad, update_direction,
args.rho, args.use_regularization)
step_size_list.append(step_size)
weights.add_(update_direction, alpha=step_size)
# code can be changed to have 5 or 6 communication rounds per iteration
communication_rounds += (5 if iteration == 0 else 6)
iteration += 1
print("{:^16g}{:^16g}{:^16.2e}{:^16.2e}{:^16.2e}{:^16.2e}".format(
iterations_list[-1], communication_rounds_list[-1], loss_list[-1],
grad_norm_list[-1], test_val_list[-1], step_size_list[-1]))
if dist.get_rank() == 0:
data = zip(iterations_list, communication_rounds_list, loss_list,
grad_norm_list, test_val_list, step_size_list)
np.savetxt('DINO.csv',list(data),delimiter=',',header=",".join(header))
