def run_task(data_dir, task_id):
"""
Train and test for each task
"""
print("Train and test for task %d ..." % task_id)
print("We are going to use this")
# Parse data
train_files = glob.glob('%s/qa3_*_train.txt' % (data_dir, task_id))
test_files = glob.glob('%s/qa3_*_test.txt' % (data_dir, task_id))
dictionary = {"nil": 0}
train_story, train_questions, train_qstory = parse_babi_task(
train_files, dictionary, False)
test_story, test_questions, test_qstory = parse_babi_task(
test_files, dictionary, False)
general_config = BabiConfig(train_story, train_questions, dictionary)
# #### R: this line build a empty model to train
# memory, model, loss = build_model(general_config)
# if general_config.linear_start:
# train_linear_start(train_story, train_questions, train_qstory, memory, model, loss, general_config)
# else:
# train(train_story, train_questions, train_qstory, memory, model, loss, general_config)
# memory, model, loss = build_model(general_config)
# this line
test(test_story, test_questions, test_qstory, memory, model, loss,
general_config)
def run_task(data_dir, task_id):
"""
Train and test for each task
"""
print("Train and test for task %d ..." % task_id)
# Parse data
train_files = glob.glob('%s/qa%d_*_train.txt' % (data_dir, task_id))
test_files = glob.glob('%s/qa%d_*_test.txt' % (data_dir, task_id))
dictionary = {"nil": 0}
train_story, train_questions, train_qstory = parse_babi_task(
train_files, dictionary, False)
test_story, test_questions, test_qstory = parse_babi_task(
test_files, dictionary, False)
general_config = BabiConfig(train_story, train_questions, dictionary)
memory, model, loss = build_model(general_config)
if general_config.linear_start:
train_linear_start(train_story, train_questions, train_qstory, memory,
model, loss, general_config)
else:
train(train_story, train_questions, train_qstory, memory, model, loss,
general_config)
test(test_story, test_questions, test_qstory, memory, model, loss,
general_config)
def main():
train_story_set = StoryDataset(sis_train, vocab)
# val_story_set = StoryDataset(sis_val, vocab)
# test_story_set = StoryDataset(sis_test, vocab)
train_loader = DataLoader(train_story_set,
shuffle=False,
batch_size=BATCH_SIZE,
collate_fn=collate_story,
pin_memory=False)
# imgs of shape [BS, 5, 3, 224, 224]
# sents BS * 5 * MAX_LEN
model_v1 = ModelV1(vocab)
# Learning rate is the most sensitive value to set,
# will need to test what works well past 400 instances
optimizer = torch.optim.Adam(model_v1.parameters(),
lr=0.001) # .001 for 400
isTraining = True
if isTraining:
train(10, model_v1, train_loader, optimizer)
else:
model_v1.load_state_dict(torch.load('./Training/7'))
test_loader = DataLoader(train_story_set,
shuffle=False,
batch_size=BATCH_SIZE,
collate_fn=collate_story)
test(model_v1, test_loader, device, vocab)
def main():
model = Seq2Seq(input_dim=40, vocab_size=len(LETTER_LIST), hidden_dim=128)
optimizer = optim.Adam(model.parameters(), lr=0.001)
criterion = nn.CrossEntropyLoss(reduction=None)
nepochs = 25
batch_size = 64 if DEVICE == 'cuda' else 1
speech_train, speech_valid, speech_test, transcript_train, transcript_valid = load_data(
)
character_text_train = transform_letter_to_index(transcript_train,
LETTER_LIST)
character_text_valid = transform_letter_to_index(transcript_valid,
LETTER_LIST)
train_dataset = Speech2TextDataset(speech_train, character_text_train)
# val_dataset =
test_dataset = Speech2TextDataset(speech_test, None, False)
train_loader = DataLoader(train_dataset,
batch_size=batch_size,
shuffle=True,
collate_fn=collate)
# val_loader =
test_loader = DataLoader(test_dataset,
batch_size=batch_size,
shuffle=False,
collate_fn=collate_test)
for epoch in range(nepochs):
train(model, train_loader, criterion, optimizer, epoch)
# val()
test(model, test_loader, epoch)
def run():
parser = GooeyParser()
subs = parser.add_subparsers(help='commands', dest='commands')
train_parser = subs.add_parser('train', help='Configurate model training')
param_group = train_parser.add_argument_group("Model parameter option", gooey_options={'show_border': True, 'columns': 2})
args_param.add(param_group)
data_group = train_parser.add_argument_group("Data Options", gooey_options={'show_border': True}, )
args_data.add(data_group)
save_group = train_parser.add_argument_group("Save option", gooey_options={'show_border': True, 'columns': 2})
args_save.add(save_group)
test_parser = subs.add_parser('test', help='Configurate model testining')
data_group = test_parser.add_argument_group("Data Options", gooey_options={'show_border': True}, )
args_data.add(data_group)
load_group = test_parser.add_argument_group("Load option", gooey_options={'show_border': True, 'columns': 1})
args_load.add(load_group, model_savefiles())
save_group = test_parser.add_argument_group("Save option", gooey_options={'show_border': True, 'columns': 2})
args_save.add(save_group)
args = parser.parse_args()
X, Y = load_data(args.data_path)
if args.commands =='train':
train(args, X, Y, save_dir)
else:
with open(save_dir + args.load_model, 'rb') as f:
model = pickle.load(f)
test(args, X, Y, save_dir, model)
def running_stats(model, num):
model1 = deepcopy(model)
print('infere net in eval mode ...')
test(model1, test_loader)
run_mean = deepcopy(model1[num].running_mean)
run_var = deepcopy(model1[num].running_var)
print('infere net in train mode ...')
test(model1, test_loader, is_train=True)
print('Mean relation mean ',
torch.mean(mode1[num].running_mean / run_mean))
print('Mean relation var ', torch.mean(model1[num].running_var / run_var))
def test_model(data_dir, model_file, log_path, rnd_seed):
memn2n = MemN2N(data_dir, model_file, log_path, rnd_seed)
memn2n.load_model()
#_, _, memn2n.loss = build_model(memn2n.general_config)
# Read test data
print("Reading test data from %s ..." % memn2n.data_dir)
test_data_path = glob.glob('%s/qa*_*_test.txt' % memn2n.data_dir)
test_story, test_questions, test_qstory = \
parse_babi_task(test_data_path,
memn2n.general_config.dictionary,
False)
test(test_story, test_questions, test_qstory, memn2n.memory, memn2n.model,
memn2n.loss, memn2n.general_config)
def tester() -> None:
train_on_gpu = torch.cuda.is_available()
test_data = torch.load("test_clean.pt")
test_loader = torch.utils.data.DataLoader(test_data,
batch_size=64,
pin_memory=True)
model = SiAudNet()
if train_on_gpu:
model = model.cuda()
model.load_dict("model_siaudnet.pt")
test(model, train_on_gpu, test_loader)
print()
def main():
model = Seq2Seq(input_dim=40, vocab_size=len(LETTER_LIST), hidden_dim=128)
optimizer = optim.SGD(model.parameters(), lr=1e-4, weight_decay=5e-4)
scheduler = optim.lr_scheduler.StepLR(optimizer, step_size=5, gamma=0.93)
criterion = nn.CrossEntropyLoss(reduction='none')
init_epoch = 0
nepochs = 50
batch_size = 64 if DEVICE == 'cuda' else 1
speech_train, speech_valid, speech_test, transcript_train, transcript_valid = load_data(
)
character_text_train = transform_letter_to_index(transcript_train,
LETTER_LIST)
character_text_valid = transform_letter_to_index(transcript_valid,
LETTER_LIST)
train_dataset = Speech2TextDataset(speech_train, character_text_train)
val_dataset = Speech2TextDataset(speech_valid, character_text_valid)
test_dataset = Speech2TextDataset(speech_test, None, False)
train_loader = DataLoader(train_dataset,
batch_size=batch_size,
shuffle=True,
collate_fn=collate_train_val)
val_loader = DataLoader(val_dataset,
batch_size=batch_size,
shuffle=True,
collate_fn=collate_train_val)
test_loader = DataLoader(test_dataset,
batch_size=batch_size,
shuffle=False,
collate_fn=collate_test)
val_distances = []
exp = 27
# model.load_state_dict(torch.load('BestModel9.pth'))
with open('stats_{}'.format(exp), 'w') as file:
file.write('Experiment: {}\n'.format(exp))
for epoch in range(init_epoch, nepochs):
train(model, train_loader, criterion, optimizer, scheduler, epoch, exp)
val_distances.append(val(model, val_loader, epoch, exp))
if val_distances[-1] == min(val_distances):
torch.save(model.state_dict(), 'BestModel{}.pth'.format(exp))
if epoch % 3 == 0 or epoch == nepochs - 1:
test(model, test_loader, exp)
def predict_with_best_net(run_name, sampled=False):
path = 'model/VGG_paras_{}.pkl'.format(run_name)
net = my_VGG(requeires_grad=False)
if torch.cuda.is_available():
net.load_state_dict(torch.load(path))
net = net.cuda()
else:
net.load_state_dict(torch.load(path, map_location='cpu'))
_, _, _, _, image_test_list, test_filenames = load_file_list(sampled=sampled)
criterion = nn.CrossEntropyLoss()
prediction = test(net, criterion, image_test_list, is_test=True, sampled=sampled, is_file_type=True,
model_type='vgg')
prediction_dict = {}
for i in range(len(test_filenames)):
id = int(test_filenames[i].split('.', 1)[0])
prediction_dict[id] = prediction[i]
if not os.path.exists('result'):
os.makedirs('result')
file_out = open('./result/result_VGG_{}.csv'.format(run_name), 'w')
file_out.write('id,label\n')
for key in sorted(prediction_dict.keys()):
file_out.write('{},{}\n'.format(key, prediction_dict[key]))
file_out.close()
def save():
sampled = False
run_name = 'trainable_worker50'
path = 'model/ResNet_paras_{}.pkl'.format(run_name)
net = my_ResNet(requeires_grad=False)
if torch.cuda.is_available():
net.load_state_dict(torch.load(path))
net = net.cuda()
else:
net.load_state_dict(torch.load(path, map_location='cpu'))
_, _, images_val_list, labels_val, _, _ = load_file_list(sampled=sampled)
criterion = nn.CrossEntropyLoss()
prediction = test(net, criterion, images_val_list, is_test=True, sampled=sampled, is_file_type=True,
model_type='resnet', my_path='./train')
prediction_dict = {}
for i in range(len(images_val_list)):
print('{}, label = {}, prediction = {}'.format(images_val_list[i], 1 - labels_val[i], prediction[i]))
prediction_dict[images_val_list[i]] = (1 - labels_val[i], prediction[i])
if not os.path.exists('val_analysis'):
os.makedirs('val_analysis')
save_object(prediction_dict, 'val_analysis/val_prediction_result.pkl')
def get_accuracies(network, loader, device, model_name=None):
if model_name is not None:
print(model_name)
total_len = len(loader.dataset)
test_loss, correct = test(network, loader, device=device, is_print=False)
print(
f'Accuracy in eval mode: test loss: {np.mean(test_loss):.4f}, accuracy: {np.sum(correct)}/{total_len} ({100. * np.sum(correct)/total_len:.2f}%)'
)
test_loss, correct = test(network,
loader,
device=device,
is_train=True,
is_print=False)
print(
f'Accuracy in train mode: test loss: {np.mean(test_loss):.4f}, accuracy: {np.sum(correct)}/{total_len} ({100. * np.sum(correct)/total_len:.2f}%)'
)
print('____________________________________________')
def main():
# Train classifiers using training samples
train_pos_dir = "VJ_dataset\\trainset\\faces"
train_neg_dir = "VJ_dataset\\trainset\\non-faces"
rounds = 10
cascade = train( train_pos_dir, train_neg_dir, rounds )
# Save training results
save_cascade(cascade)
# Test with test samples
test_pos_dir = "VJ_dataset\\testset\\faces"
test_neg_dir = "VJ_dataset\\testset\\faces"
test( test_pos_dir, test_neg_dir, cascade, 10 )
def main(epochs, batch_size, input_size, hidden_size, num_layers, spatial_num, drop_out, logged=False):
DEVICE = torch.device('cuda:0' if torch.cuda.is_available() else 'cpu')
print('DEVICE: ', DEVICE)
date = '06_03'
group = 1
sorted_ = True
# sorted_ = False
# load data from '.npy' file
# x_train, x_test, y_train, y_test = load_group_eeg_data(date, group, sorted_=sorted_)
x_train, x_test, y_train, y_test = load_combined_eeg_data(date, sorted_=sorted_)
# x: (N, C, T) N: trials C: channels T: times
train_num, test_num = x_train.shape[0], x_test.shape[0]
# make dataset for train and test
train_data = MyDataset(x_train, x_test, y_train, y_test)
test_data = MyDataset(x_train, x_test, y_train, y_test, train=False)
train_loader = DataLoader(train_data, batch_size=batch_size)
test_loader = DataLoader(test_data, batch_size=batch_size)
# model initiation
# model = LSTM(num_classes=2, input_size=64, hidden_size=256, num_layers=2)
# model = LSTM_CNN(num_classes=2, channels=x_train.shape[1], input_size=input_size, hidden_size=hidden_size,
# num_layers=num_layers, spatial_num=spatial_num, drop_out=drop_out)
# model = LSTM_CNN_Half(num_classes=2, batch_size=batch_size, T=x_train.shape[-1],
# C=x_train.shape[-2], input_size=input_size, hidden_size=hidden_size,
# num_layers=num_layers, spatial_num=spatial_num)
model = LSTM_CNN_Spatial(num_classes=2, batch_size=batch_size, T=x_train.shape[-1],
C=x_train.shape[-2], input_size=input_size, hidden_size=hidden_size,
num_layers=num_layers, spatial_num=spatial_num)
model = model.to(DEVICE)
criterion = nn.CrossEntropyLoss()
optimizer = optim.Adam(model.parameters())
log = []
if logged:
log.append(f'{epochs}\t{batch_size}\t{input_size}\t{hidden_size}\t'
f'{num_layers}\t{spatial_num}\t{drop_out}\t')
train(model, criterion, optimizer, train_loader, DEVICE,train_num, epochs, logged)
test(model, criterion, test_loader, DEVICE, test_num, log, logged)
def run_joint_tasks(data_dir):
"""
Train and test for all tasks but the trained model is built using training data from all tasks.
"""
print("Jointly train and test for all tasks ...")
tasks = range(20)
# Parse training data
train_data_path = []
for t in tasks:
train_data_path += glob.glob('%s/qa%d_*_train.txt' % (data_dir, t + 1))
dictionary = {"nil": 0}
train_story, train_questions, train_qstory = parse_babi_task(
train_data_path, dictionary, False)
# Parse test data for each task so that the dictionary covers all words before training
for t in tasks:
test_data_path = glob.glob('%s/qa%d_*_test.txt' % (data_dir, t + 1))
parse_babi_task(test_data_path, dictionary,
False) # ignore output for now
general_config = BabiConfigJoint(train_story, train_questions, dictionary)
memory, model, loss = build_model(general_config)
if general_config.linear_start:
train_linear_start(train_story, train_questions, train_qstory, memory,
model, loss, general_config)
else:
train(train_story, train_questions, train_qstory, memory, model, loss,
general_config)
# Test on each task
for t in tasks:
print("Testing for task %d ..." % (t + 1))
test_data_path = glob.glob('%s/qa%d_*_test.txt' % (data_dir, t + 1))
dc = len(dictionary)
test_story, test_questions, test_qstory = parse_babi_task(
test_data_path, dictionary, False)
assert dc == len(
dictionary
) # make sure that the dictionary already covers all words
test(test_story, test_questions, test_qstory, memory, model, loss,
general_config)
def main():
model = Seq2Seq(input_dim=40,
vocab_size=len(LETTER_LIST),
hidden_dim=256,
isAttended=True)
# print(model)
optimizer = optim.Adam(model.parameters(), lr=0.001, weight_decay=5e-5)
# scheduler = torch.optim.lr_scheduler.StepLR(optimizer, step_size=2, gamma=0.1)
criterion = nn.CrossEntropyLoss(reduce=False, reduction=None)
nepochs = 18
batch_size = 64 if DEVICE == 'cuda' else 1
speech_train, speech_valid, speech_test, transcript_train, transcript_valid = load_data(
)
character_text_train = transform_letter_to_index(transcript_train,
LETTER_LIST)
character_text_valid = transform_letter_to_index(transcript_valid,
LETTER_LIST)
train_dataset = Speech2TextDataset(speech_train, character_text_train)
val_dataset = Speech2TextDataset(speech_valid, character_text_valid)
test_dataset = Speech2TextDataset(speech_test, None, False)
train_loader = DataLoader(train_dataset,
batch_size=batch_size,
shuffle=True) #, collate_fn=collate_train)
val_loader = DataLoader(val_dataset, batch_size=batch_size,
shuffle=True) #, collate_fn=collate_train)
test_loader = DataLoader(test_dataset,
batch_size=batch_size,
shuffle=False) #, collate_fn=collate_test)
for epoch in range(nepochs):
train(model, train_loader, criterion, optimizer, epoch)
# scheduler.step()
val(model, val_loader, criterion, epoch)
# Test and Save results
test_preds = test(model, test_loader)
test_preds = test_preds.cpu().numpy()
results = []
for i in range(test_preds.shape[0]):
result = ""
for j in range(test_preds.shape[1]):
if (test_preds[i, j] == 0 or (test_preds[i, j] == 33)):
continue
if (test_preds[i, j] == 34):
break
result = result + index2letter[test_preds[i, j]]
results.append(result)
name = "Epoch_" + str(epoch) + "_LAS_submission.csv"
ids = list(range(len(test_dataset)))
ids.insert(0, 'Id')
results.insert(0, 'Predicted')
with open(name, 'w') as f:
writer = csv.writer(f)
writer.writerows(zip(ids, results))
def test_model(data_dir, model_file, log_path, rnd_seed):
memn2n = MemN2N(data_dir, model_file, log_path, rnd_seed)
memn2n.load_model()
#_, _, memn2n.loss = build_model(memn2n.general_config)
# Read test data
print("Reading test data from %s ..." % memn2n.data_dir)
test_data_path = glob.glob('%s/qa*_*_test.txt' % memn2n.data_dir)
test_story, test_questions, test_qstory = \
parse_babi_task(test_data_path,
memn2n.general_config.dictionary,
False)
test(test_story,
test_questions,
test_qstory,
memn2n.memory,
memn2n.model,
memn2n.loss,
memn2n.general_config)
def run(args):
if USE_CUDA:
print("Using cuda...")
else:
print("Suggest using cuda, break now...")
phone_map = make_phone_map()
phone2index, index2phone, index2char = make_phone_char()
label = make_label(phone2index)
if args.test:
test(args.test, args.feature, args.model, args.hidden, args.layer,
args.output, index2char, index2phone, phone_map, phone2index)
elif args.loss:
train_loss(args.loss)
else:
train(args.feature, label, args.epochs, args.model, args.layer,
args.hidden, args.save, args.postfix, index2char, index2phone,
phone_map, phone2index)
def main():
# Check device available
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
print("Running on: {}".format(device))
# parse and print arguments
args = make_args_parser()
print_args(args)
# Load both source and target domain datasets
source_dataloader = datasets.get_source_domain(args.source)
target_dataloader = datasets.get_target_domain(args.target)
# Create directory to save model's checkpoints
try:
model_root = MODEL_CHECKPOINTS + args.source + '-' + args.target
os.makedirs(model_root)
except OSError as e:
if e.errno == errno.EEXIST:
pass
else:
raise
# Init model
if args.model == 'MultibranchLeNet':
net = models.MultibranchLeNet()
architectures = ['conv1_d', 'conv1_t', 'conv2_d', 'conv2_t']
if device == 'cuda':
net.cuda()
# Init losses
class_loss = torch.nn.NLLLoss()
domain_loss = torch.nn.NLLLoss()
if device == 'cuda':
class_criterion.cuda()
domain_criterion.cuda()
# Init optimizer
optimizer = optim.SGD(net.parameters(),
lr=constants.LR,
momentum=constants.MOMENTUM)
# Init all parameters to be optimized using Backpropagation
for param in net.parameters():
param.requires_grad = True
# Train model
for epoch in range(constants.N_EPOCHS):
train_test.train(net, class_loss, domain_loss, source_dataloader,
target_dataloader, optimizer, epoch, model_root,
device)
train_test.test(net, source_dataloader, target_dataloader, device)
def main():
args = parser.parse_args()
use_cuda = not args.no_cuda and torch.cuda.is_available()
torch.manual_seed(args.seed)
device = torch.device("cuda" if use_cuda else "cpu")
kwargs = {'num_workers': 1, 'pin_memory': True} if use_cuda else {}
train_loader = torch.utils.data.DataLoader(datasets.MNIST(
'/tmp',
train=True,
download=True,
transform=transforms.Compose([
transforms.ToTensor(),
transforms.Normalize((0.1307, ), (0.3081, ))
])),
batch_size=args.batch_size,
shuffle=True,
**kwargs)
test_loader = torch.utils.data.DataLoader(datasets.MNIST(
'/tmp',
train=False,
transform=transforms.Compose([
transforms.ToTensor(),
transforms.Normalize((0.1307, ), (0.3081, ))
])),
batch_size=args.test_batch_size,
shuffle=True,
**kwargs)
model = fc.Net().to(device)
optimizer = optim.SGD(model.parameters(), lr=args.lr)
for epoch in range(1, args.epochs + 1):
train(args, model, device, train_loader, optimizer, args.epochs, epoch)
test(args, model, device, test_loader)
print_nonzeros(model)
def get_accuracies_pd(models, loader, device):
columns = ['Accuracy eval', 'Accuracy train', 'Loss eval', 'Loss train']
index = [m for m in models]
data = pd.DataFrame(index=index, columns=columns)
total_len = len(loader.dataset)
for i, model in enumerate(models):
test_loss, correct = test(models[model],
loader,
device=device,
is_print=False)
data['Loss eval'].iloc[i] = np.mean(test_loss)
data['Accuracy eval'].iloc[i] = 100. * np.sum(correct) / total_len
test_loss, correct = test(models[model],
loader,
device=device,
is_train=True,
is_print=False)
data['Loss train'].iloc[i] = np.mean(test_loss)
data['Accuracy train'].iloc[i] = 100. * np.sum(correct) / total_len
return data.rename_axis('Model Name', axis=1)
def main(nets, net_name, data_info, batch_size, epochs, num_iteration, logged=False):
# num_classes = date_info['num_classes']
subject_id = data_info['subject_id']
edge_type = data_info['edge_type']
feature_type = data_info['feature_type']
num_features = data_info['num_features']
sorted_ = data_info['sorted']
train_loader = gen_dataloader(data_info['train_lis'],
batch_size=batch_size)
test_loader = gen_dataloader(data_info['test_lis'],
batch_size=batch_size)
for i in trange(num_iteration):
# model initiation
if net_name == 'tag_jk' or net_name == 'tag_jk_learn':
model = nets[net_name](num_features, 4).to(device)
elif net_name == 'tag_lstm':
model = nets[net_name]().to(device)
else:
model = nets[net_name](num_features).to(device)
# criterion = torch.nn.BCELoss()
# criterion = torch.nn.CrossEntropyLoss(weight=torch.tensor([1.0, 0.5]).to(device))
criterion = torch.nn.CrossEntropyLoss()
optimizer = optim.Adam(model.parameters())
log = []
if logged:
if len(subject_id) > 2:
log.append(f'{subject_id}\t{sorted_}\t{edge_type:<6s}\t{feature_type:<6s}\t'
f'{net_name:<8s}\t{batch_size:<4d}\t{epochs:<4d}\t')
else:
log.append(f's{subject_id:02d}\t{edge_type:<6s}\t{feature_type:<6s}\t'
f'{net_name:<8s}\t{batch_size:<4d}\t{epochs:<4d}\t')
train(model, criterion, optimizer, train_loader, device,
data_info['train_num'], epochs, logged)
test(model, criterion, test_loader, device,
data_info['test_num'], log, logged)
def imputation_eval(model_class, data, opts):
if model_class == MAGIC:
data.x = data.y = data.x.t()
data.nonzeromask = data.nonzeromask.t()
criterion = torch.nn.MSELoss()
kf = KFold(n_splits=3, random_state=opts.seed, shuffle=True)
loss_test = []
if opts.dataset == 'Ecoli':
indices = np.indices([data.x.size(0), data.x.size(1)]).reshape(2, -1)
else:
indices = np.array(data.x.cpu().data.numpy().nonzero())
for k, train_test_indices in enumerate(kf.split(np.arange(len(
indices[0])))):
print('Fold number: {:d}'.format(k))
train_index, test_index = train_test_indices
eval_data = copy.deepcopy(data)
eval_data.train_mask = index_to_mask(
[indices[0, train_index], indices[1, train_index]],
eval_data.x.size()).to(opts.device)
eval_data.test_mask = index_to_mask(
[indices[0, test_index], indices[1, test_index]],
eval_data.x.size()).to(opts.device)
eval_data.x = eval_data.x * eval_data.train_mask
if model_class == MAGIC:
pred = model_class().fit_transform(
(eval_data.x * eval_data.train_mask).cpu().data.numpy())
loss_test.append(
scimse(pred * eval_data.test_mask.cpu().data.numpy(),
(eval_data.y * eval_data.test_mask).cpu().data.numpy()))
else:
model = model_class(eval_data.num_features, opts).to(opts.device)
optimizer = torch.optim.Adam(model.parameters(),
lr=opts.learning_rate)
best_loss = 1e9
for epoch in range(1, opts.epochs + 1):
loss_train = train_epoch(model,
eval_data,
optimizer,
opts,
criterion=criterion)
if loss_train < best_loss:
best_loss = loss_train
best_model = copy.deepcopy(model)
if epoch % 10 == 0:
print('Epoch number: {:03d}, Train_loss: {:.5f}'.format(
epoch, loss_train))
loss_test.append(test(best_model, eval_data, None, criterion,
opts))
print('Loss: {:.5f}, TestLoss: {:.5f}'.format(
loss_train, loss_test[k]))
print('Average+-std Error for test RNA values: {:.5f}+-{:.5f}'.format(
np.mean(loss_test), np.std(loss_test)))
return np.mean(loss_test)
def main(m):
best_error = 100
opt = parser_params()
if opt.dataset == 'cifar10':
train_loader, test_loader = cifar10_dataloaders(
batch_size=opt.batch_size, num_workers=opt.num_workers)
n_cls = 10
else:
raise NotImplementedError(opt.dataset)
print(opt.model[m])
model = model_dict[opt.model[m]](num_classes=n_cls)
optimizer = optim.SGD(model.parameters(),
lr=opt.learning_rate,
momentum=opt.momentum,
weight_decay=opt.weight_decay)
criterion = nn.CrossEntropyLoss()
if torch.cuda.is_available():
model = model.cuda()
criterion = criterion.cuda()
cudnn.benchmark = True
for epoch in range(1, opt.epochs + 1):
if m == 4 and epoch == 1:
opt.learning_rate = 0.01
else:
opt.learning_rate = 0.1
adjust_learning_rate(epoch, opt, optimizer)
print("==> training...")
train_error, train_loss = train(epoch, train_loader, model, criterion,
optimizer, list_loss_train[m])
print('epoch {} | train_loss: {}'.format(epoch, train_loss))
print('epoch {} | train_error: {}'.format(epoch, train_error))
test_error, test_loss = test(test_loader, model, criterion,
list_loss_test[m])
print('epoch {} | test_loss: {}'.format(epoch, test_loss))
print('epoch {} | test_error: {}'.format(epoch, test_error))
print('iterations: {}'.format(epoch * len(train_loader)))
if best_error > test_error:
best_error = test_error
print('Min error: ', best_error)
def run_joint_tasks(data_dir):
"""
Train and test for all tasks but the trained model is built using training data from all tasks.
"""
print("Jointly train and test for all tasks ...")
tasks = range(20)
# Parse training data
train_data_path = []
for t in tasks:
train_data_path += glob.glob('%s/qa%d_*_train.txt' % (data_dir, t + 1))
dictionary = {"nil": 0}
train_story, train_questions, train_qstory = parse_babi_task(train_data_path, dictionary, False)
# Parse test data for each task so that the dictionary covers all words before training
for t in tasks:
test_data_path = glob.glob('%s/qa%d_*_test.txt' % (data_dir, t + 1))
parse_babi_task(test_data_path, dictionary, False) # ignore output for now
general_config = BabiConfigJoint(train_story, train_questions, dictionary)
memory, model, loss = build_model(general_config)
if general_config.linear_start:
train_linear_start(train_story, train_questions, train_qstory, memory, model, loss, general_config)
else:
train(train_story, train_questions, train_qstory, memory, model, loss, general_config)
# Test on each task
for t in tasks:
print("Testing for task %d ..." % (t + 1))
test_data_path = glob.glob('%s/qa%d_*_test.txt' % (data_dir, t + 1))
dc = len(dictionary)
test_story, test_questions, test_qstory = parse_babi_task(test_data_path, dictionary, False)
assert dc == len(dictionary) # make sure that the dictionary already covers all words
test(test_story, test_questions, test_qstory, memory, model, loss, general_config)
def main():
model = Seq2Seq(input_dim=40, vocab_size=len(LETTER_LIST), hidden_dim=128)
learningRate = 0.001
weightDecay = 5e-5
optimizer = torch.optim.Adam(model.parameters(),
lr=learningRate,
weight_decay=weightDecay)
criterion = nn.CrossEntropyLoss(reduction='none')
nepochs = 40
batch_size = 64 if DEVICE == 'cuda' else 1
speech_train, speech_valid, speech_test, transcript_train, transcript_valid = load_data(
)
character_text_train = transform_letter_to_index(transcript_train,
LETTER_LIST)
character_text_valid = transform_letter_to_index(transcript_valid,
LETTER_LIST)
train_dataset = Speech2TextDataset(speech_train, character_text_train)
val_dataset = Speech2TextDataset(speech_valid, character_text_valid)
test_dataset = Speech2TextDataset(speech_test, None, False)
train_loader = DataLoader(train_dataset,
batch_size=batch_size,
shuffle=True,
collate_fn=collate_train)
val_loader = DataLoader(val_dataset,
batch_size=batch_size,
shuffle=False,
collate_fn=collate_train)
test_loader = DataLoader(test_dataset,
batch_size=batch_size,
shuffle=False,
collate_fn=collate_test)
model.train()
model.load_state_dict(torch.load('./new1.pth'))
model.to(DEVICE)
scheduler = StepLR(optimizer, step_size=10, gamma=0.5)
for epoch in range(nepochs):
train(model, train_loader, criterion, optimizer, epoch)
scheduler.step()
model.eval()
data_list = test(model, test_loader)
save_to_csv(data_list)
print('done')
def run_task(data_dir, task_id):
"""
Train and test for each task
"""
print("Train and test for task %d ..." % task_id)
# Parse data
train_files = glob.glob('%s/qa%d_*_train.txt' % (data_dir, task_id))
test_files = glob.glob('%s/qa%d_*_test.txt' % (data_dir, task_id))
dictionary = {"nil": 0}
train_story, train_questions, train_qstory = parse_babi_task(train_files, dictionary, False)
test_story, test_questions, test_qstory = parse_babi_task(test_files, dictionary, False)
general_config = BabiConfig(train_story, train_questions, dictionary)
memory, model, loss = build_model(general_config)
if general_config.linear_start:
train_linear_start(train_story, train_questions, train_qstory, memory, model, loss, general_config)
else:
train(train_story, train_questions, train_qstory, memory, model, loss, general_config)
test(test_story, test_questions, test_qstory, memory, model, loss, general_config)
def run_tableQA(data_path, model_file):
"""
Train and test for table QA
"""
# Parse data
train_files = glob.glob(data_path.format('train'))
test_files = glob.glob(data_path.format('test'))
# SV: init dict with pre-trained vectors, e.g. from fastText
# dictionary = fasttext.load_model(EMBEDDINGS_MODEL_PATH)
dictionary = {"nil": 0}
train_story, train_questions, train_qstory = parse_babi_task(
train_files, dictionary, False)
test_story, test_questions, test_qstory = parse_babi_task(
test_files, dictionary, False)
# print test_questions
print 'Dictionary:', len(dictionary)
general_config = BabiConfig(train_story, train_questions, dictionary)
memory, model, loss = build_model(general_config)
if general_config.linear_start:
train_linear_start(train_story, train_questions, train_qstory, memory,
model, loss, general_config)
else:
train(train_story, train_questions, train_qstory, memory, model, loss,
general_config)
test(test_story, test_questions, test_qstory, memory, model, loss,
general_config)
# save_model
with gzip.open(model_file, "wb") as f:
print("Saving model to file %s ..." % model_file)
reversed_dict = dict((ix, w) for w, ix in dictionary.items())
pickle.dump((reversed_dict, memory, model, loss, general_config), f)
def predict_with_best_net(run_name, sampled=False, hidden_num=50):
path = 'model/Mixture_paras_{}.pkl'.format(run_name)
net = Mixture_Model(hidden_num=hidden_num)
if torch.cuda.is_available():
net.load_state_dict(torch.load(path))
net = net.cuda()
else:
net.load_state_dict(torch.load(path, map_location='cpu'))
_, _, _, _, images_test, test_filenames = get_data(
'cache/embedding_resnet_nonshuffle.pkl',
'cache/embedding_vgg_nonshuffle.pkl')
images_test = torch.from_numpy(images_test)
criterion = nn.CrossEntropyLoss()
prediction = test(net,
criterion,
images_test,
is_test=True,
sampled=sampled,
is_file_type=False,
dim=2)
prediction_dict = {}
for i in range(len(test_filenames)):
id = int(test_filenames[i].split('.', 1)[0])
prediction_dict[id] = prediction[i]
if not os.path.exists('result'):
os.makedirs('result')
file_out = open('./result/result_Mixture_{}.csv'.format(run_name), 'w')
file_out.write('id,label\n')
for key in sorted(prediction_dict.keys()):
file_out.write('{},{}\n'.format(key, prediction_dict[key]))
file_out.close()
def run_epochs(model, train_dataloader, validation_dataloader, optimizer,
scheduler, epochs):
start_time = time.time()
train_losses, train_accs = [], []
test_losses, test_accs = [], []
for epoch in range(epochs):
print('======== Epoch %d ========' % epoch)
train_loss, train_acc = train(model, train_dataloader, optimizer,
scheduler)
train_losses.append(train_loss)
train_accs.append(train_acc)
test_loss, test_acc = test(model, validation_dataloader)
test_losses.append(test_loss)
test_accs.append(test_acc)
print("Total training took %.2f seconds" % (time.time() - start_time))
return train_losses, train_accs, test_losses, test_accs
def run_test(data_dir, task_id, memn2n):
print("Test for task %d ..." % task_id)
test_files = None
if type(data_dir) is tuple:
test_files = glob.glob('%s/qa%d_valid.txt' % (data_dir[1], task_id))
else:
test_files = glob.glob('%s/qa%d_*_test.txt' % (data_dir, task_id))
test_story, test_questions, test_qstory = parse_babi_task(
test_files, memn2n.general_config.dictionary, False)
"""
reversed_dict = None
memory = None
model = None
loss = None
general_config = None
with gzip.open(model_file, "rb") as f:
self.reversed_dict, self.memory, self.model, self.loss, self.general_config = pickle.load(f)
"""
return test(test_story, test_questions, test_qstory, memn2n.memory,
memn2n.model, memn2n.loss, memn2n.general_config)
def run(model, optimizer, criterion, train_loader, dev_loader, nepochs):
train_losses, train_accs = [], []
test_losses, test_accs = [], []
epochs = []
for e in range(nepochs):
print('----- EPOCH %d ------- \n' % e)
start_time = time.time()
# Train
train_loss, train_acc = train(train_loader, model, criterion,
optimizer)
train_losses.append(train_loss)
train_accs.append(train_acc)
# Test
test_loss, test_acc = test(dev_loader, model, criterion)
test_losses.append(test_loss)
test_accs.append(test_acc)
print(train_loss, train_acc, test_loss, test_acc)
return train_losses, train_accs, test_losses, test_accs
def result_gen(test_loader, model_num):
model = Seq2Seq(input_dim=40,
vocab_size=len(LETTER_LIST),
hidden_dim=128,
value_size=128,
key_size=256,
is_attended=True)
model.load_state_dict(torch.load('model_{}'.format(model_num + 1)))
model.eval()
model = model.to(DEVICE)
test_text = test(model, test_loader)
test_text_str = []
for cur_text in test_text:
test_text_str.append(transform_index_to_letter(cur_text, LETTER_LIST))
res_df = pd.DataFrame(test_text_str)
res_df.to_csv('result_{}.csv'.format(model_num + 1),
index=True,
header=False)