def compare_channel(left, right):
"""Compare two channels on same field values"""
# result = almost_equal(left.Ek, right.Ek) and \
# almost_equal(left.Gbar, right.Gbar) and \
# almost_equal(left.Xpower, right.Xpower) and \
# almost_equal(left.Ypower, right.Ypower) and \
# almost_equal(left.Zpower, right.Zpower) and \
# almost_equal(left.instant, right.instant) and \
# almost_equal(left.Gk, right.Gk) and \
# almost_equal(left.Ik, right.Ik)
result = almost_equal(left.Ek, right.Ek)
if not result:
print(left.path + ".Ek = " + str(left.Ek) + " <> " + right.path +
".Ek = " + str(right.Ek))
return result
result = almost_equal(left.Gbar, right.Gbar)
if not result:
print(left.path + ".Gbar = " + str(left.Gbar) + " <> " + right.path +
".Gbar = " + str(right.Gbar))
return result
result = almost_equal(left.Xpower, right.Xpower)
if not result:
print(left.path + ".Xpower = " + str(left.Xpower) + " <> " +
right.path + ".Xpower = " + str(right.Xpower))
return result
result = almost_equal(left.Ypower, right.Ypower)
if not result:
print(left.path + ".Ypower = " + str(left.Ypower) + " <> " +
right.path + ".Ypower = " + str(right.Ypower))
return result
result = almost_equal(left.Zpower, right.Zpower)
if not result:
print(left.path + ".Zpower = " + str(left.Zpower) + " <> " +
right.path + ".Zpower = " + str(right.Zpower))
return result
result = almost_equal(left.instant, right.instant)
if not result:
print(left.path + ".instant = " + str(left.instant) + " <> " +
right.path + ".instant = " + str(right.instant))
return result
result = almost_equal(left.Gk, right.Gk)
if not result:
print(left.path + ".Gk = " + str(left.Gk) + " <> " + right.path +
".Gk = " + str(right.Gk))
return result
result = almost_equal(left.Ik, right.Ik)
if not result:
print(left.path + ".Ik = " + str(left.Ik) + " <> " + right.path +
".Ik = " + str(right.Ik))
return result
return True
def compare_channel(left, right):
"""Compare two channels on same field values"""
# result = almost_equal(left.Ek, right.Ek) and \
# almost_equal(left.Gbar, right.Gbar) and \
# almost_equal(left.Xpower, right.Xpower) and \
# almost_equal(left.Ypower, right.Ypower) and \
# almost_equal(left.Zpower, right.Zpower) and \
# almost_equal(left.instant, right.instant) and \
# almost_equal(left.Gk, right.Gk) and \
# almost_equal(left.Ik, right.Ik)
result = almost_equal(left.Ek, right.Ek)
if not result:
print(left.path + ".Ek = " + str(left.Ek) + " <> " + right.path + ".Ek = " + str(right.Ek))
return result
result = almost_equal(left.Gbar, right.Gbar)
if not result:
print(left.path + ".Gbar = " + str(left.Gbar) + " <> " + right.path + ".Gbar = " + str(right.Gbar))
return result
result = almost_equal(left.Xpower, right.Xpower)
if not result:
print(left.path + ".Xpower = " + str(left.Xpower) + " <> " + right.path + ".Xpower = " + str(right.Xpower))
return result
result = almost_equal(left.Ypower, right.Ypower)
if not result:
print(left.path + ".Ypower = " + str(left.Ypower) + " <> " + right.path + ".Ypower = " + str(right.Ypower))
return result
result = almost_equal(left.Zpower, right.Zpower)
if not result:
print(left.path + ".Zpower = " + str(left.Zpower) + " <> " + right.path + ".Zpower = " + str(right.Zpower))
return result
result = almost_equal(left.instant, right.instant)
if not result:
print(left.path + ".instant = " + str(left.instant) + " <> " + right.path + ".instant = " + str(right.instant))
return result
result = almost_equal(left.Gk, right.Gk)
if not result:
print(left.path + ".Gk = " + str(left.Gk) + " <> " + right.path + ".Gk = " + str(right.Gk))
return result
result = almost_equal(left.Ik, right.Ik)
if not result:
print(left.path + ".Ik = " + str(left.Ik) + " <> " + right.path + ".Ik = " + str(right.Ik))
return result
return True
def compare_compartment(left, right):
"""Compare if two compartments have same field values"""
# return almost_equal(left.Em, right.Em) and \
# almost_equal(left.Rm, right.Rm) and \
# almost_equal(left.Cm, right.Cm) and \
# almost_equal(left.Ra, right.Ra) and \
# almost_equal(left.initVm, right.initVm)
result = almost_equal(left.Em, right.Em)
if not result:
print left.path + ".Em = " + str(left.Em) + " <> " + right.path + ".Em = " + str(right.Em)
return result
result = almost_equal(left.Rm, right.Rm)
if not result:
print(left.path + ".Rm = " + str(left.Rm) + " <> " + right.path + ".Rm = " + str(right.Rm))
return result
result = almost_equal(left.Cm, right.Cm)
if not result:
print(left.path + ".Cm = " + str(left.Cm) + " <> " + right.path + ".Cm = " + str(right.Cm))
return result
result = almost_equal(left.Ra, right.Ra)
if not result:
print(left.path + ".Ra = " + str(left.Ra) + " <> " + right.path + ".Ra = " + str(right.Ra))
return result
result = almost_equal(left.initVm, right.initVm)
if not result:
print(left.path + ".initVm = " + str(left.initVm) + " <> " + right.path + ".initVm = " + str(right.initVm))
return result
result = almost_equal(left.Vm, right.Vm)
if not result:
print(left.path + ".Vm = " + str(left.Vm) + " <> " + right.path + ".Vm = " + str(right.Vm))
return result
leftchans = moose.context.getWildcardList(left.path + '/##[TYPE=HHChannel]', True)
rightchans = moose.context.getWildcardList(right.path + '/##[TYPE=HHChannel]', True)
result = len(leftchans) == len(rightchans)
if not result:
print(left.path + ":channel-count = " + str(len(leftchans)) + " <> " + right.path + ":channel-count = " + str(len(rightchans)))
return result
lchanset = set([moose.HHChannel(ch).name for cha in leftchans])
rchanset = set([moose.HHChannel(ch).name for cha in rightchans])
for ch in lchanset - rchanset:
print ch.path, 'not in', right.path
result = False
for ch in rchanset - lchanset:
print ch.path, 'not in', left.path
result = False
if not result:
return result
for ch in leftchans:
lchan = moose.HHChannel(ch)
rchan = moose.HHChannel('%s/%s' % (right.path, lchan.name))
result = compare_channel(lchan, rchan)
return result
return True
def check_reversal_potentials(self):
for num in range(SupLTS.num_comp):
comp = self.comp[num + 1]
for chan_id in comp.neighbours('channel'):
chan = moose.HHChannel(chan_id)
chan_class = eval(chan.name)
key = None
if issubclass(chan_class, NaChannel):
key = 'ENa'
elif issubclass(chan_class, KChannel):
key = 'EK'
elif issubclass(chan_class, CaChannel):
key = 'ECa'
elif issubclass(chan_class, AR):
key = 'EAR'
else:
pass
assert trbutil.almost_equal(chan.Ek, SupLTS.chan_params[key])
def check_reversal_potentials(self):
for num in range(SupLTS.num_comp):
comp = self.comp[num + 1]
for chan_id in comp.neighbours('channel'):
chan = moose.HHChannel(chan_id)
chan_class = eval(chan.name)
key = None
if issubclass(chan_class, NaChannel):
key = 'ENa'
elif issubclass(chan_class, KChannel):
key = 'EK'
elif issubclass(chan_class, CaChannel):
key = 'ECa'
elif issubclass(chan_class, AR):
key = 'EAR'
else:
pass
assert trbutil.almost_equal(chan.Ek, SupLTS.chan_params[key])
def compare_compartment(left, right):
"""Compare if two compartments have same field values"""
# return almost_equal(left.Em, right.Em) and \
# almost_equal(left.Rm, right.Rm) and \
# almost_equal(left.Cm, right.Cm) and \
# almost_equal(left.Ra, right.Ra) and \
# almost_equal(left.initVm, right.initVm)
result = almost_equal(left.Em, right.Em)
if not result:
print left.path + ".Em = " + str(left.Em) + " <> " + right.path + ".Em = " + str(right.Em)
return result
result = almost_equal(left.Rm, right.Rm)
if not result:
print(left.path + ".Rm = " + str(left.Rm) + " <> " + right.path + ".Rm = " + str(right.Rm))
return result
result = almost_equal(left.Cm, right.Cm)
if not result:
print(left.path + ".Cm = " + str(left.Cm) + " <> " + right.path + ".Cm = " + str(right.Cm))
return result
result = almost_equal(left.Ra, right.Ra)
if not result:
print(left.path + ".Ra = " + str(left.Ra) + " <> " + right.path + ".Ra = " + str(right.Ra))
return result
result = almost_equal(left.initVm, right.initVm)
if not result:
print(left.path + ".initVm = " + str(left.initVm) + " <> " + right.path + ".initVm = " + str(right.initVm))
return result
result = almost_equal(left.Vm, right.Vm)
if not result:
print(left.path + ".Vm = " + str(left.Vm) + " <> " + right.path + ".Vm = " + str(right.Vm))
return result
return True
def compare_compartment(left, right):
"""Compare if two compartments have same field values"""
# return almost_equal(left.Em, right.Em) and \
# almost_equal(left.Rm, right.Rm) and \
# almost_equal(left.Cm, right.Cm) and \
# almost_equal(left.Ra, right.Ra) and \
# almost_equal(left.initVm, right.initVm)
result = almost_equal(left.Em, right.Em)
if not result:
print left.path + ".Em = " + str(
left.Em) + " <> " + right.path + ".Em = " + str(right.Em)
return result
result = almost_equal(left.Rm, right.Rm)
if not result:
print(left.path + ".Rm = " + str(left.Rm) + " <> " + right.path +
".Rm = " + str(right.Rm))
return result
result = almost_equal(left.Cm, right.Cm)
if not result:
print(left.path + ".Cm = " + str(left.Cm) + " <> " + right.path +
".Cm = " + str(right.Cm))
return result
result = almost_equal(left.Ra, right.Ra)
if not result:
print(left.path + ".Ra = " + str(left.Ra) + " <> " + right.path +
".Ra = " + str(right.Ra))
return result
result = almost_equal(left.initVm, right.initVm)
if not result:
print(left.path + ".initVm = " + str(left.initVm) + " <> " +
right.path + ".initVm = " + str(right.initVm))
return result
result = almost_equal(left.Vm, right.Vm)
if not result:
print(left.path + ".Vm = " + str(left.Vm) + " <> " + right.path +
".Vm = " + str(right.Vm))
return result
leftchans = moose.context.getWildcardList(
left.path + '/##[TYPE=HHChannel]', True)
rightchans = moose.context.getWildcardList(
right.path + '/##[TYPE=HHChannel]', True)
result = len(leftchans) == len(rightchans)
if not result:
print(left.path + ":channel-count = " + str(len(leftchans)) + " <> " +
right.path + ":channel-count = " + str(len(rightchans)))
return result
lchanset = set([moose.HHChannel(ch).name for cha in leftchans])
rchanset = set([moose.HHChannel(ch).name for cha in rightchans])
for ch in lchanset - rchanset:
print ch.path, 'not in', right.path
result = False
for ch in rchanset - lchanset:
print ch.path, 'not in', left.path
result = False
if not result:
return result
for ch in leftchans:
lchan = moose.HHChannel(ch)
rchan = moose.HHChannel('%s/%s' % (right.path, lchan.name))
result = compare_channel(lchan, rchan)
return result
return True
def check_Em(self):
for comp_no in range(SupLTS.num_comp):
assert trbutil.almost_equal(self.cell.comp[comp_no + 1].Em, -65e-3)
def check_Em(self):
for comp_no in range(SupLTS.num_comp):
assert trbutil.almost_equal(self.cell.comp[comp_no + 1].Em, -65e-3)
