def __init__(self, prefix='', project_id=None):
super(ZIPSurfaceImporterForm, self).__init__(prefix, project_id)
self.uploaded = UploadField('application/zip', self, name='uploaded', required=True, label='Surface file (zip)')
self.surface_type = SimpleSelectField(ALL_SURFACES_SELECTION, self, name='surface_type', required=True,
label='Surface type', default=list(ALL_SURFACES_SELECTION)[0])
self.zero_based_triangles = SimpleBoolField(self, name='zero_based_triangles', default=True,
label='Zero based triangles')
self.should_center = SimpleBoolField(self, name='should_center',
label='Center surface using vertex means along axes')
def __init__(self, prefix='', project_id=None):
super(ConnectivityCreatorForm, self).__init__(prefix, project_id)
self.original_connectivity = DataTypeSelectField(
self.get_required_datatype(),
self,
required=True,
name='original_connectivity',
label='Parent connectivity',
conditions=self.get_filters())
self.new_weights = SimpleArrayField(self,
name='new_weights',
dtype=numpy.float,
required=True,
label='Weights json array')
self.new_tracts = SimpleArrayField(self,
name='new_tracts',
dtype=numpy.float,
required=True,
label='Tracts json array')
self.interest_area_indexes = SimpleArrayField(
self,
name='interest_area_indexes',
dtype=numpy.int,
required=True,
label='Indices of selected nodes as json array')
self.is_branch = SimpleBoolField(self,
required=False,
name='is_branch',
label='Is it a branch')
def __init__(self, prefix='', project_id=None):
super(GIFTISurfaceImporterForm, self).__init__(prefix, project_id)
surface_types = ALL_SURFACES_SELECTION.copy()
surface_types['Specified in the file metadata'] = OPTION_READ_METADATA
self.file_type = SimpleSelectField(surface_types,
self,
name='file_type',
required=True,
label='Specify file type : ',
default=list(surface_types)[0])
self.data_file = UploadField(
'.gii',
self,
name='data_file',
required=True,
label='Please select a .gii (LH if cortex)')
self.data_file_part2 = UploadField(
'.gii',
self,
name='data_file_part2',
label="Optionally select 2'nd .gii (RH if cortex)")
self.should_center = SimpleBoolField(
self,
name='should_center',
default=False,
label='Center surface using vertex means along axes')
def __init__(self, prefix='', project_id=None):
super(NIFTIImporterForm, self).__init__(prefix, project_id)
self.data_file = UploadField(
'.nii, .gz, .zip',
self,
name='data_file',
required=True,
label='Please select file to import (gz or nii)')
self.apply_corrections = SimpleBoolField(
self,
name='apply_corrections',
label='Apply auto Corrections',
doc='Check this when the NII mapping has values outside [-1..N-1]. '
'All outside range will be set -1 (background).')
self.mappings_file = UploadField(
'.txt',
self,
name='mappings_file',
label='Mapping File',
doc=
'Fill this for Region Mappings, when the indices in the NII do not match '
'the Connectivity [0..N-1] indices')
self.connectivity = DataTypeSelectField(
ConnectivityIndex,
self,
name='connectivity',
label='Connectivity',
doc=
'Optional Connectivity if the NII file is a volume2regions mapping'
)
def __init__(self, prefix='', project_id=None):
super(ObjSurfaceImporterForm, self).__init__(prefix, project_id)
self.surface_type = SimpleSelectField(ALL_SURFACES_SELECTION, self, name='surface_type', required=True,
label='Specify file type :', default=list(ALL_SURFACES_SELECTION)[0])
self.data_file = UploadField('.obj', self, name='data_file', required=True,
label='Please select file to import')
self.should_center = SimpleBoolField(self, name='should_center', default=False,
label='Center surface using vertex means along axes')
def __init__(self, prefix='', project_id=None):
super(MatTimeSeriesImporterForm, self).__init__(prefix, project_id)
self.data_file = UploadField('.mat',
self,
name='data_file',
required=True,
label='Please select file to import')
self.dataset_name = SimpleStrField(
self,
name='dataset_name',
required=True,
label='Matlab dataset name',
doc='Name of the MATLAB dataset where data is stored')
self.structure_path = SimpleStrField(
self,
name='structure_path',
default='',
label='For nested structures enter the field path (separated by .)'
)
self.transpose = SimpleBoolField(
self,
name='transpose',
default=False,
label='Transpose the array. Expected shape is (time, channel)')
self.slice = SimpleStrField(
self,
name='slice',
default='',
label=
'Slice of the array in numpy syntax. Expected shape is (time, channel)'
)
self.sampling_rate = SimpleIntField(self,
name='sampling_rate',
default=100,
label='sampling rate (Hz)')
self.start_time = SimpleIntField(self,
name='start_time',
default=0,
label='starting time (ms)',
required=True)