def step_1(self, do_reset=0, **kwargs):
"""
Generate the html for the first step of the local connectivity page.
:param do_reset: Boolean telling to start from empty page or not
:param kwargs: not actually used, but parameters are still submitted from UI since we just\
use the same js function for this. TODO: do this in a smarter way
"""
if int(do_reset) == 1:
new_context = ContextLocalConnectivity()
common.add2session(KEY_LCONN_CONTEXT, new_context)
context = common.get_from_session(KEY_LCONN_CONTEXT)
right_side_interface = self._get_lconn_interface()
left_side_interface = self.get_select_existent_entities('Load Local Connectivity', LocalConnectivity,
context.selected_entity)
# add interface to session, needed for filters
self.add_interface_to_session(left_side_interface, right_side_interface['inputList'])
template_specification = dict(title="Surface - Local Connectivity")
template_specification['mainContent'] = 'spatial/local_connectivity_step1_main'
template_specification.update(right_side_interface)
template_specification['displayCreateLocalConnectivityBtn'] = True
template_specification['loadExistentEntityUrl'] = LOAD_EXISTING_URL
template_specification['resetToDefaultUrl'] = RELOAD_DEFAULT_PAGE_URL
template_specification['existentEntitiesInputList'] = left_side_interface
template_specification['submit_parameters_url'] = '/spatial/localconnectivity/create_local_connectivity'
template_specification['equationViewerUrl'] = '/spatial/localconnectivity/get_equation_chart'
template_specification['equationsPrefixes'] = json.dumps(self.plotted_equations_prefixes)
template_specification['next_step_url'] = '/spatial/localconnectivity/step_2'
msg, msg_type = common.get_message_from_session()
template_specification['displayedMessage'] = msg
return self.fill_default_attributes(template_specification)
def step_2(self, **kwargs):
"""
Generate the html for the second step of the local connectivity page.
:param kwargs: not actually used, but parameters are still submitted from UI since we just\
use the same js function for this. TODO: do this in a smarter way
"""
context = common.get_from_session(KEY_LCONN_CONTEXT)
left_side_interface = self.get_select_existent_entities(
'Load Local Connectivity:', LocalConnectivity,
context.selected_entity)
template_specification = dict(title="Surface - Local Connectivity")
template_specification[
'mainContent'] = 'spatial/local_connectivity_step2_main'
template_specification[
'existentEntitiesInputList'] = left_side_interface
template_specification['loadExistentEntityUrl'] = LOAD_EXISTING_URL
template_specification['resetToDefaultUrl'] = RELOAD_DEFAULT_PAGE_URL
template_specification[
'next_step_url'] = '/spatial/localconnectivity/step_1'
msg, _ = common.get_message_from_session()
template_specification['displayedMessage'] = msg
context = common.get_from_session(KEY_LCONN_CONTEXT)
if context.selected_entity is not None:
selected_local_conn = ABCAdapter.load_entity_by_gid(
context.selected_entity)
template_specification.update(
self.display_surface(selected_local_conn.surface.gid))
template_specification['no_local_connectivity'] = False
min_value, max_value = selected_local_conn.get_min_max_values()
template_specification['minValue'] = min_value
template_specification['maxValue'] = max_value
else:
template_specification['no_local_connectivity'] = True
template_specification[common.KEY_PARAMETERS_CONFIG] = False
return self.fill_default_attributes(template_specification)
def step_2(self, **kwargs):
"""
Generate the html for the second step of the local connectivity page.
:param kwargs: not actually used, but parameters are still submitted from UI since we just\
use the same js function for this. TODO: do this in a smarter way
"""
context = common.get_from_session(KEY_LCONN_CONTEXT)
left_side_interface = self.get_select_existent_entities('Load Local Connectivity:', LocalConnectivity,
context.selected_entity)
template_specification = dict(title="Surface - Local Connectivity")
template_specification['mainContent'] = 'spatial/local_connectivity_step2_main'
template_specification['existentEntitiesInputList'] = left_side_interface
template_specification['loadExistentEntityUrl'] = LOAD_EXISTING_URL
template_specification['resetToDefaultUrl'] = RELOAD_DEFAULT_PAGE_URL
template_specification['next_step_url'] = '/spatial/localconnectivity/step_1'
msg, _ = common.get_message_from_session()
template_specification['displayedMessage'] = msg
context = common.get_from_session(KEY_LCONN_CONTEXT)
if context.selected_entity is not None:
selected_local_conn = ABCAdapter.load_entity_by_gid(context.selected_entity)
template_specification.update(self.display_surface(selected_local_conn.surface.gid))
template_specification['no_local_connectivity'] = False
min_value, max_value = selected_local_conn.get_min_max_values()
template_specification['minValue'] = min_value
template_specification['maxValue'] = max_value
else:
template_specification['no_local_connectivity'] = True
template_specification[common.KEY_PARAMETERS_CONFIG] = False
return self.fill_default_attributes(template_specification)
def step_2(self, **kwargs):
"""
Generate the html for the second step of the local connectivity page.
:param kwargs: not actually used, but parameters are still submitted from UI since we just\
use the same js function for this.
"""
current_lconn = common.get_from_session(KEY_LCONN)
left_side_form = LocalConnectivitySelectorForm(
project_id=common.get_current_project().id)
left_side_form.existentEntitiesSelect.data = current_lconn.gid.hex
template_specification = dict(title="Surface - Local Connectivity")
template_specification[
'mainContent'] = 'spatial/local_connectivity_step2_main'
template_specification[
'existentEntitiesInputList'] = self.render_adapter_form(
left_side_form)
template_specification['loadExistentEntityUrl'] = LOAD_EXISTING_URL
template_specification['resetToDefaultUrl'] = RELOAD_DEFAULT_PAGE_URL
template_specification[
'next_step_url'] = '/spatial/localconnectivity/step_1'
msg, _ = common.get_message_from_session()
template_specification['displayedMessage'] = msg
if current_lconn is not None:
selected_local_conn = load_entity_by_gid(current_lconn.gid)
template_specification.update(
self.display_surface(selected_local_conn.fk_surface_gid))
template_specification['no_local_connectivity'] = False
template_specification[
'minValue'] = selected_local_conn.matrix_non_zero_min
template_specification[
'maxValue'] = selected_local_conn.matrix_non_zero_max
else:
template_specification['no_local_connectivity'] = True
template_specification[common.KEY_PARAMETERS_CONFIG] = False
return self.fill_default_attributes(template_specification)
def step_1(self, do_reset=0, **kwargs):
"""
Generate the html for the first step of the local connectivity page.
:param do_reset: Boolean telling to start from empty page or not
:param kwargs: not actually used, but parameters are still submitted from UI since we just\
use the same js function for this. TODO: do this in a smarter way
"""
if int(do_reset) == 1:
new_context = ContextLocalConnectivity()
common.add2session(KEY_LCONN_CONTEXT, new_context)
context = common.get_from_session(KEY_LCONN_CONTEXT)
right_side_interface = self._get_lconn_interface()
left_side_interface = self.get_select_existent_entities('Load Local Connectivity', LocalConnectivity,
context.selected_entity)
# add interface to session, needed for filters
self.add_interface_to_session(left_side_interface, right_side_interface['inputList'])
template_specification = dict(title="Surface - Local Connectivity")
template_specification['mainContent'] = 'spatial/local_connectivity_step1_main'
template_specification.update(right_side_interface)
template_specification['displayCreateLocalConnectivityBtn'] = True
template_specification['loadExistentEntityUrl'] = LOAD_EXISTING_URL
template_specification['resetToDefaultUrl'] = RELOAD_DEFAULT_PAGE_URL
template_specification['existentEntitiesInputList'] = left_side_interface
template_specification['submit_parameters_url'] = '/spatial/localconnectivity/create_local_connectivity'
template_specification['equationViewerUrl'] = '/spatial/localconnectivity/get_equation_chart'
template_specification['equationsPrefixes'] = json.dumps(self.plotted_equations_prefixes)
template_specification['next_step_url'] = '/spatial/localconnectivity/step_2'
msg, msg_type = common.get_message_from_session()
template_specification['displayedMessage'] = msg
return self.fill_default_attributes(template_specification)
def fill_default_attributes(self, template_specification):
"""
Add some entries that are used in both steps then fill the default required attributes.
"""
context = common.get_from_session(KEY_SURFACE_CONTEXT)
template_specification["entitiySavedName"] = [{
'name':
DataTypeMetaData.KEY_TAG_1,
'label':
'Display name',
'type':
'str',
"disabled":
"False",
"default":
context.equation_kwargs.get(DataTypeMetaData.KEY_TAG_1, '')
}]
template_specification['loadExistentEntityUrl'] = LOAD_EXISTING_URL
template_specification['resetToDefaultUrl'] = RELOAD_DEFAULT_PAGE_URL
msg, msg_type = common.get_message_from_session()
template_specification['displayedMessage'] = msg
template_specification['messageType'] = msg_type
return super(SurfaceStimulusController,
self).fill_default_attributes(template_specification,
subsection='surfacestim')
def fill_default_attributes(self, template_dictionary):
"""
Overwrite base controller to add required parameters for adapter templates.
"""
template_dictionary['loadExistentEntityUrl'] = LOAD_EXISTING_URL
template_dictionary['resetToDefaultUrl'] = RELOAD_DEFAULT_PAGE_URL
msg, msg_type = common.get_message_from_session()
template_dictionary['displayedMessage'] = msg
template_dictionary['messageType'] = msg_type
return SpatioTemporalController.fill_default_attributes(self, template_dictionary, subsection='regionstim')
def fill_default_attributes(self, template_specification):
"""
Add some entries that are used in both steps then fill the default required attributes.
"""
template_specification['loadExistentEntityUrl'] = LOAD_EXISTING_URL
template_specification['resetToDefaultUrl'] = RELOAD_DEFAULT_PAGE_URL
msg, msg_type = common.get_message_from_session()
template_specification['displayedMessage'] = msg
template_specification['messageType'] = msg_type
return super(SurfaceStimulusController, self).fill_default_attributes(template_specification,
subsection='surfacestim')
def fill_default_attributes(self, template_dictionary):
"""
Overwrite base controller to add required parameters for adapter templates.
"""
context = common.get_from_session(KEY_REGION_CONTEXT)
default = context.equation_kwargs.get(DataTypeMetaData.KEY_TAG_1, '')
template_dictionary["entitiySavedName"] = [{'name': DataTypeMetaData.KEY_TAG_1, "disabled": "False",
'label': 'Display name', 'type': 'str', "default": default}]
template_dictionary['loadExistentEntityUrl'] = LOAD_EXISTING_URL
template_dictionary['resetToDefaultUrl'] = RELOAD_DEFAULT_PAGE_URL
msg, msg_type = common.get_message_from_session()
template_dictionary['displayedMessage'] = msg
template_dictionary['messageType'] = msg_type
return SpatioTemporalController.fill_default_attributes(self, template_dictionary, subsection='regionstim')
def step_1(self, do_reset=0, **kwargs):
"""
Generate the html for the first step of the local connectivity page.
:param do_reset: Boolean telling to start from empty page or not
:param kwargs: not actually used, but parameters are still submitted from UI since we just\
use the same js function for this. TODO: do this in a smarter way
"""
project_id = common.get_current_project().id
if int(do_reset) == 1:
new_lconn = LocalConnectivityCreatorModel()
default_surface_index = dao.try_load_last_surface_of_type(project_id, CORTICAL)
if default_surface_index:
new_lconn.surface = uuid.UUID(default_surface_index.gid)
else:
# TODO: ok to keep a default gid here?
new_lconn.surface = uuid.uuid4()
common.add2session(KEY_LCONN, new_lconn)
current_lconn = common.get_from_session(KEY_LCONN)
existent_lcon_form = LocalConnectivitySelectorForm(project_id=project_id)
existent_lcon_form.existentEntitiesSelect.data = current_lconn.gid.hex
configure_lcon_form = LocalConnectivityCreatorForm(self.possible_equations, project_id=project_id)
configure_lcon_form.fill_from_trait(current_lconn)
current_lconn.equation = configure_lcon_form.spatial.value()
template_specification = dict(title="Surface - Local Connectivity")
template_specification['mainContent'] = 'spatial/local_connectivity_step1_main'
template_specification['inputList'] = configure_lcon_form
template_specification['displayCreateLocalConnectivityBtn'] = True
template_specification['loadExistentEntityUrl'] = LOAD_EXISTING_URL
template_specification['resetToDefaultUrl'] = RELOAD_DEFAULT_PAGE_URL
template_specification['existentEntitiesInputList'] = existent_lcon_form
template_specification['submit_parameters_url'] = '/spatial/localconnectivity/create_local_connectivity'
template_specification['equationViewerUrl'] = '/spatial/localconnectivity/get_equation_chart'
template_specification['localConnBaseUrl'] = '/spatial/localconnectivity'
self.plotted_equation_prefixes = {self.SURFACE_FIELD: configure_lcon_form.surface.name,
self.EQUATION_FIELD: configure_lcon_form.spatial.name,
self.CUTOFF_FIELD: configure_lcon_form.cutoff.name,
self.DISPLAY_NAME_FIELD: configure_lcon_form.display_name.name,
self.EQUATION_PARAMS_FIELD: configure_lcon_form.spatial_params.name[1:]}
template_specification['equationsPrefixes'] = json.dumps(self.plotted_equation_prefixes)
template_specification['next_step_url'] = '/spatial/localconnectivity/step_2'
msg, msg_type = common.get_message_from_session()
template_specification['displayedMessage'] = msg
return self.fill_default_attributes(template_specification)
def fill_default_attributes(self, template_specification):
"""
Add some entries that are used in both steps then fill the default required attributes.
"""
context = common.get_from_session(KEY_SURFACE_CONTEXT)
template_specification["entitiySavedName"] = [
{'name': DataTypeMetaData.KEY_TAG_1, 'label': 'Display name', 'type': 'str',
"disabled": "False", "default": context.equation_kwargs.get(DataTypeMetaData.KEY_TAG_1, '')}]
template_specification['loadExistentEntityUrl'] = LOAD_EXISTING_URL
template_specification['resetToDefaultUrl'] = RELOAD_DEFAULT_PAGE_URL
msg, msg_type = common.get_message_from_session()
template_specification['displayedMessage'] = msg
template_specification['messageType'] = msg_type
return super(SurfaceStimulusController, self).fill_default_attributes(template_specification,
subsection='surfacestim')
def fill_default_attributes(self, template_dictionary):
"""
Overwrite base controller to add required parameters for adapter templates.
"""
context = common.get_from_session(KEY_REGION_CONTEXT)
default = context.equation_kwargs.get(DataTypeMetaData.KEY_TAG_1, '')
template_dictionary["entitiySavedName"] = [{
'name': DataTypeMetaData.KEY_TAG_1,
"disabled": "False",
'label': 'Display name',
'type': 'str',
"default": default
}]
template_dictionary['loadExistentEntityUrl'] = LOAD_EXISTING_URL
template_dictionary['resetToDefaultUrl'] = RELOAD_DEFAULT_PAGE_URL
msg, msg_type = common.get_message_from_session()
template_dictionary['displayedMessage'] = msg
template_dictionary['messageType'] = msg_type
return SpatioTemporalController.fill_default_attributes(
self, template_dictionary, subsection='regionstim')
