def __init__(self, args):
emLabels.__init__(self,args)
# save the command line argument dict as a string
out = StringIO(); print( vars(args), file=out )
self.arg_str = out.getvalue(); out.close()
# xxx - meh, need to fix this
if not self.data_type_out: self.data_type_out = self.data_type
assert( len(self.fileprefixes) == 1 and len(self.filepaths) == 1 ) # prefix / path for h5 label inputs only
# print out all initialized variables in verbose mode
if self.dpCubeStitcher_verbose: print('dpCubeStitcher, verbose mode:\n'); print(vars(self))
def __init__(self, args):
self.LIST_ARGS += ['mesh_infiles']
emLabels.__init__(self,args)
#self.data_type = self.DTYPE
self.do_smooth = self.smooth.all()
self.mesh_outfile_stl = ''
if self.mesh_outfile:
# vtk does not seem to like home ~/ or env vars in path
self.mesh_outfile = os.path.expandvars(os.path.expanduser(self.mesh_outfile))
ext = os.path.splitext(self.mesh_outfile)[1][1:]
if ext == 'stl':
self.mesh_outfile_stl = self.mesh_outfile
else:
assert( ext == 'h5' ) # only stl or h5 outputs supported
# print out all initialized variables in verbose mode
if self.dpLabelMesher_verbose: print('dpLabelMesher, verbose mode:\n'); print(vars(self))
def __init__(self, args):
emLabels.__init__(self,args)
self.fgbwconn = nd.morphology.generate_binary_structure(dpLoadh5.ND, self.fg_connectivity)
self.bgbwconn = nd.morphology.generate_binary_structure(dpLoadh5.ND, self.bg_connectivity)
