class TestWorkspace(object):
@unittest.skipIf(skip_arts_tests, 'ARTS library not available')
def __init__(self):
self.ws = Workspace()
@unittest.skipIf(skip_arts_tests, 'ARTS library not available')
def test_index_transfer(self):
self.ws.IndexCreate("index_variable")
i = np.random.randint(0, 100)
self.ws.index_variable = i
assert self.ws.index_variable.value == i
@unittest.skipIf(skip_arts_tests, 'ARTS library not available')
def test_array_of_index_transfer(self):
self.ws.ArrayOfIndexCreate("array_of_index_variable")
i = [np.random.randint(0, 100) for j in range(10)]
self.ws.array_of_index_variable = i
assert self.ws.array_of_index_variable.value == i
@unittest.skipIf(skip_arts_tests, 'ARTS library not available')
def test_string_transfer(self):
self.ws.StringCreate("string_variable")
s = "some random string."
self.ws.string_variable = s
assert self.ws.string_variable.value == s
@unittest.skipIf(skip_arts_tests, 'ARTS library not available')
def test_vector_transfer(self):
self.ws.VectorCreate("vector_variable")
v = np.random.rand(10)
self.ws.vector_variable = v
assert all(self.ws.vector_variable.value == v)
@unittest.skipIf(skip_arts_tests, 'ARTS library not available')
def test_matrix_transfer(self):
self.ws.MatrixCreate("matrix_variable")
m = np.random.rand(10, 10)
self.ws.matrix_variable = m
assert all(self.ws.matrix_variable.value.ravel() == m.ravel())
@unittest.skipIf(skip_arts_tests, 'ARTS library not available')
def test_supergeneric_overload_resolution(self):
self.ws.ArrayOfIndexCreate("array_of_index")
self.ws.ArrayOfArrayOfIndexCreate("array_of_array_of_index")
self.ws.array_of_index = [1, 2, 3]
self.ws.Append(self.ws.array_of_array_of_index, self.ws.array_of_index)
self.ws.Append(self.ws.array_of_array_of_index, self.ws.array_of_index)
@unittest.skipIf(skip_arts_tests, 'ARTS library not available')
def test_creation(self):
self.ws.ArrayOfIndexCreate("array_of_index")
self.ws.ArrayOfIndexCreate("array_of_index")
class TestWorkspace:
def setup_method(self):
"""This ensures a new Workspace for every test."""
self.dir = os.path.dirname(os.path.realpath(__file__))
self.ws = Workspace()
self.setup_workspace()
def setup_workspace(self):
ws = self.ws
ws.atmosphere_dim = 1
ws.p_grid = np.linspace(1e5, 1e3, 21)
ws.Touch(ws.lat_grid)
ws.Touch(ws.lon_grid)
ws.f_grid = 183.0e9 * np.ones(1)
ws.stokes_dim = 1
ws.sensor_los = 180.0 * np.ones((1, 1))
ws.sensor_pos = 830e3 * np.ones((1, 1))
ws.sensorOff()
def test_index_transfer(self):
self.ws.IndexCreate("index_variable")
i = np.random.randint(0, 100)
self.ws.index_variable = i
assert self.ws.index_variable.value == i
def test_array_of_index_transfer(self):
self.ws.ArrayOfIndexCreate("array_of_index_variable")
i = [np.random.randint(0, 100) for j in range(10)]
self.ws.array_of_index_variable = i
assert self.ws.array_of_index_variable.value == i
self.ws.array_of_index_variable = []
assert self.ws.array_of_index_variable.value == []
def test_array_of_vector_transfer(self):
self.ws.ArrayOfVectorCreate("array_of_vector_variable")
aov = typhon.arts.xml.load(
os.path.join(self.dir, "xml/reference/arrayofvector.xml"))
self.ws.array_of_vector_variable = aov
assert self.ws.array_of_vector_variable.value == aov
def test_string_transfer(self):
self.ws.StringCreate("string_variable")
s = "some random string."
self.ws.string_variable = s
assert self.ws.string_variable.value == s
def test_vector_transfer(self):
self.ws.VectorCreate("vector_variable")
v = np.random.rand(10)
self.ws.vector_variable = v
assert all(self.ws.vector_variable.value == v)
def test_matrix_transfer(self):
self.ws.MatrixCreate("matrix_variable")
m = np.random.rand(10, 10)
self.ws.matrix_variable = m
assert all(self.ws.matrix_variable.value.ravel() == m.ravel())
def test_sparse_transfer(self):
sparse_formats = ["csc", "csr", "bsr", "lil", "dok", "coo", "dia"]
for f in sparse_formats:
i = sp.sparse.identity(11)
self.ws.sensor_response = i
print(self.ws.sensor_response.value)
assert np.all(
i.todense() == self.ws.sensor_response.value.todense())
def test_supergeneric_overload_resolution(self):
self.ws.ArrayOfIndexCreate("array_of_index")
self.ws.ArrayOfArrayOfIndexCreate("array_of_array_of_index")
self.ws.array_of_index = [1, 2, 3]
self.ws.Append(self.ws.array_of_array_of_index, self.ws.array_of_index)
self.ws.Append(self.ws.array_of_array_of_index, self.ws.array_of_index)
def test_creation(self):
self.ws.ArrayOfIndexCreate("array_of_index")
self.ws.ArrayOfIndexCreate("array_of_index")
with pytest.raises(Exception):
self.ws.VectorCreate("array_of_index")
def test_wsm_error(self):
with pytest.raises(Exception):
self.ws.yCalc()
def test_doc(self):
repr(self.ws.yCalc)
def test_agenda(self):
self.ws.atmosphere_dim = 1
@arts_agenda
def add_1(ws):
ws.IndexAdd(ws.atmosphere_dim, ws.atmosphere_dim, 1)
add_1.execute(self.ws)
assert self.ws.atmosphere_dim.value == 2
add_1.append(add_1)
add_1.execute(self.ws)
assert self.ws.atmosphere_dim.value == 4
args = [self.ws.atmosphere_dim, self.ws.atmosphere_dim, 1]
@arts_agenda
def add_2(ws):
ws.IndexAdd(*args)
add_2.execute(self.ws)
assert self.ws.atmosphere_dim.value == 5
def test_execute_controlfile(self):
dir = os.path.dirname(os.path.realpath(__file__))
test_dir = os.path.join(dir, "test_files")
self.ws.WriteXML("ascii", np.array([1.0]),
os.path.join(test_dir, "vector.xml"))
os.chdir(test_dir)
self.ws.execute_controlfile("controlfile.arts")
os.remove(os.path.join(test_dir, "vector.xml"))
def test_supergeneric_overload_failure(self):
with pytest.raises(Exception):
self.ws.NumericCreate("numeric_wsv")
self.ws.StringCreate("string_wsv")
self.ws.Copy(self.ws.string_wsv, self.ws.numeric_wsv)
def test_tensor_3(self):
t_0 = np.random.rand(*([3] * 3))
self.ws.Tensor3Create("tensor_3")
self.ws.tensor_3 = t_0
assert np.all(t_0 == self.ws.tensor_3.value)
def test_tensor_4(self):
t_0 = np.random.rand(*([3] * 4))
t_1 = self.ws.Tensor4Create("tensor_4")
self.ws.tensor_4 = t_0
assert np.all(t_0 == self.ws.tensor_4.value)
def test_tensor_5(self):
t_0 = np.random.rand(*([3] * 5))
t_1 = self.ws.Tensor5Create("tensor_5")
self.ws.tensor_5 = t_0
assert np.all(t_0 == self.ws.tensor_5.value)
def test_tensor_6(self):
t_0 = np.random.rand(*([3] * 6))
t_1 = self.ws.Tensor6Create("tensor_6")
self.ws.tensor_6 = t_0
assert np.all(t_0 == self.ws.tensor_6.value)
def test_tensor_7(self):
t_0 = np.random.rand(*([3] * 7))
self.ws.Tensor7Create("tensor_7")
self.ws.tensor_7 = t_0
assert np.all(t_0 == self.ws.tensor_7.value)
def test_execute_controlfile(self):
dir = os.path.dirname(os.path.realpath(__file__))
test_dir = os.path.join(dir, "test_files")
self.ws.WriteXML("ascii", np.array([1.0]),
os.path.join(test_dir, "vector.xml"))
os.chdir(test_dir)
agenda = self.ws.execute_controlfile("controlfile.arts")
self.ws.foo = "not bar"
@arts_agenda
def execute(ws):
ws.FlagOff(ws.jacobian_do)
ws.StringSet(ws.foo, "still not bar")
INCLUDE("controlfile.arts")
INCLUDE(agenda)
self.ws.execute_agenda(execute)
assert self.ws.foo.value == "bar"
os.remove(os.path.join(test_dir, "vector.xml"))
def test_covariance_matrix(self):
ws = self.ws
ws.jacobianInit()
ws.jacobianAddAbsSpecies(species="O3",
g1=ws.p_grid,
g2=ws.lat_grid,
g3=ws.lon_grid)
ws.jacobianAddAbsSpecies(species="H2O",
g1=ws.p_grid,
g2=ws.lat_grid,
g3=ws.lon_grid)
ws.jacobianClose()
ws.covmatDiagonal(out=ws.covmat_block,
out_inverse=ws.covmat_block,
vars=10.0 * np.ones(ws.p_grid.value.size))
ws.covmat_sxAddBlock(block=ws.covmat_block)
ws.covmatDiagonal(out=ws.covmat_block,
out_inverse=ws.covmat_block,
vars=20.0 * np.ones(ws.p_grid.value.size))
ws.covmat_sxAddBlock(block=ws.covmat_block)
def test_variable_set_empty(self):
self.ws.f_grid = np.array([94e9])
self.ws.f_grid = []
assert self.ws.f_grid.value.size == 0
def test_variable_creation(self):
# Unnamed variable
wsv = self.ws.create_variable("Matrix", None)
self.ws.__setattr__(wsv.name, np.eye(5))
assert np.all(
np.isclose(np.eye(5),
self.ws.__getattr__(wsv.name).value))
# Named variable
wsv = self.ws.create_variable("Matrix", "matrix_wsv")
self.ws.matrix_wsv = np.eye(5)
assert np.all(np.isclose(np.eye(5), self.ws.matrix_wsv.value))
def test_wsv_setattr(self):
wsv = self.ws.atmosphere_dim
wsv.value = 12
assert self.ws.atmosphere_dim.value == 12
def test_convert(self):
v = WorkspaceVariable.convert("Index", 1.2)
assert (v == 1)
v = WorkspaceVariable.convert("String", "string")
assert (v == "string")
v = WorkspaceVariable.convert("Numeric", 1)
assert (type(v) == np.float64)
v = WorkspaceVariable.convert("Vector", 1.0)
assert (v.shape == (1, ))
v = WorkspaceVariable.convert("Matrix", 1.0)
assert (v.shape == (1, 1))
v = WorkspaceVariable.convert("Tensor3", 1.0)
assert (v.shape == (1, 1, 1))
v = WorkspaceVariable.convert("Tensor6", 1.0)
assert (v.shape == (1, 1, 1, 1, 1, 1))
v = WorkspaceVariable.convert("ArrayOfArrayOfIndex", 1.0)
assert (type(v) == list)
assert (type(v[0]) == list)
assert (type(v[0][0]) == int)
class TestWorkspace:
def setup_method(self):
"""This ensures a new Workspace for every test."""
self.ws = Workspace()
def test_index_transfer(self):
self.ws.IndexCreate("index_variable")
i = np.random.randint(0, 100)
self.ws.index_variable = i
assert self.ws.index_variable.value == i
def test_array_of_index_transfer(self):
self.ws.ArrayOfIndexCreate("array_of_index_variable")
i = [np.random.randint(0, 100) for j in range(10)]
self.ws.array_of_index_variable = i
assert self.ws.array_of_index_variable.value == i
def test_string_transfer(self):
self.ws.StringCreate("string_variable")
s = "some random string."
self.ws.string_variable = s
assert self.ws.string_variable.value == s
def test_vector_transfer(self):
self.ws.VectorCreate("vector_variable")
v = np.random.rand(10)
self.ws.vector_variable = v
assert all(self.ws.vector_variable.value == v)
def test_matrix_transfer(self):
self.ws.MatrixCreate("matrix_variable")
m = np.random.rand(10, 10)
self.ws.matrix_variable = m
assert all(self.ws.matrix_variable.value.ravel() == m.ravel())
def test_sparse_transfer(self):
s = Sparse(np.random.rand(10, 10))
self.ws.SparseCreate("s")
self.ws.s = s
s_array = s.toarray()
ws_s_array = self.ws.s.value.toarray()
assert np.allclose(s_array, ws_s_array)
def test_supergeneric_overload_resolution(self):
self.ws.ArrayOfIndexCreate("array_of_index")
self.ws.ArrayOfArrayOfIndexCreate("array_of_array_of_index")
self.ws.array_of_index = [1, 2, 3]
self.ws.Append(self.ws.array_of_array_of_index, self.ws.array_of_index)
self.ws.Append(self.ws.array_of_array_of_index, self.ws.array_of_index)
def test_creation(self):
self.ws.ArrayOfIndexCreate("array_of_index")
self.ws.ArrayOfIndexCreate("array_of_index")
with pytest.raises(Exception):
self.ws.VectorCreate("array_of_index")
def test_wsm_error(self):
with pytest.raises(Exception):
self.ws.yCalc()
def test_doc(self):
repr(self.ws.yCalc)
def test_agenda(self):
self.ws.atmosphere_dim = 1
arts_agenda(agenda)
assert self.ws.atmosphere_dim.value == 1
def test_execute_controlfile(self):
dir = os.path.dirname(os.path.realpath(__file__))
print(dir)
test_dir = os.path.join(dir, "test_files")
print(test_dir)
self.ws.WriteXML("ascii", np.array([1.0]),
os.path.join(test_dir, "vector.xml"))
os.chdir(test_dir)
self.ws.execute_controlfile("controlfile.arts")
os.remove(os.path.join(test_dir, "vector.xml"))