def create_nc_project(self):
"""Creates a neuroConstruct project from the NeuroML2 file(s)."""
from java.io import File
from ucl.physiol.neuroconstruct.project import Project
from ucl.physiol.neuroconstruct.cell.converters import MorphMLConverter
project = Project.createNewProject('/Users/rgerkin/', self.model_name,
None)
morphDir = File(
"%s/osb/showcase/neuroConstructShowcase/Ex3_Morphology/importedMorphologies/"
% NC_HOME)
morphmlFile = File(morphDir, "SimplePurkinjeCell.morph.xml")
converter = MorphMLConverter()
cell = converter.loadFromMorphologyFile(morphmlFile, "NewCell")
project.cellManager.addCellType(cell) # Actually add it to the project
project.cellGroupsInfo.setCellType(
"DefaultCellGroup", cell.getInstanceName(
)) # Set the type of an existing cell group to this
project.saveProject()
projFile = File("TestPython/TestPython.neuro.xml")
print "Loading project from file: " + projFile.getAbsolutePath(
) + ", exists: " + str(projFile.exists())
pm = ProjectManager()
myProject = pm.loadProject(projFile)
print "Loaded project: " + myProject.getProjectName()
morphDir = File(
"../osb/showcase/neuroConstructShowcase/Ex3_Morphology/importedMorphologies/"
)
morphmlFile = File(morphDir, "SimplePurkinjeCell.morph.xml")
print "Going to load morphology from: " + morphmlFile.getCanonicalPath()
converter = MorphMLConverter()
cell = converter.loadFromMorphologyFile(morphmlFile, "NewCell")
print "Loaded cell: " + cell.getInstanceName() + " with " + str(
cell.getAllSegments().size()) + " segments"
myProject.cellManager.addCellType(cell) # Actually add it to the project
myProject.cellGroupsInfo.setCellType(
"SampleCellGroup",
cell.getInstanceName()) # Set the type of an existing cell group to this
# Now the project can be generated as in Ex5_MultiSimGenerate.py
# * OR *
# Save project
