def ask_if_copy_to_clipboard(fasta, auto_yes):
'''Ask the user if the FASTA sequence should be copied to the clipboard,
if we're not told to automatically do so.'''
if not auto_yes:
user_interaction.ask_yes_no("Copy to clipboard", "Alright then. Bye!")
pyperclip.copy(fasta)
print "FASTA sequence copied to clipboard."
def ask_if_copy_to_clipboard(fasta, auto_yes):
'''Ask the user if the FASTA sequence should be copied to the clipboard,
if we're not told to automatically do so.'''
if not auto_yes:
user_interaction.ask_yes_no("Copy to clipboard", "Alright then. Bye!")
pyperclip.copy(fasta)
print "FASTA sequence copied to clipboard."
caption = "n/a"
title = "n/a"
extra = "n/a"
for item in root.iter("Item"):
if item.attrib["Name"] == "Caption":
caption = item.text
if item.attrib["Name"] == "Title":
title = item.text
if item.attrib["Name"] == "Extra":
extra = item.text
generate_output.print_summary(caption, title, extra)
if not args.yestoall:
user_interaction.ask_yes_no("\nIs this the result you were looking for",
"Sorry about that.")
fasta = get_from_url(url_construction.construct_fetch_url(database,
results_id,
sequence_format))
# Final sequence output
generate_output.print_fasta(fasta)
if args.output_file:
# Write the sequence to the specified filename.
generate_output.write_sequence_to_file(fasta, args.output_file)
else:
# Copy the sequence to the clipboard
generate_output.ask_if_copy_to_clipboard(fasta, args.yestoall)
exit(0)
caption = "n/a"
title = "n/a"
extra = "n/a"
for item in root.iter("Item"):
if item.attrib["Name"] == "Caption":
caption = item.text
if item.attrib["Name"] == "Title":
title = item.text
if item.attrib["Name"] == "Extra":
extra = item.text
generate_output.print_summary(caption, title, extra)
if not args.yestoall:
user_interaction.ask_yes_no("\nIs this the result you were looking for",
"Sorry about that.")
fasta = get_from_url(
url_construction.construct_fetch_url(database, results_id,
sequence_format))
# Final sequence output
generate_output.print_fasta(fasta)
if args.output_file:
# Write the sequence to the specified filename.
generate_output.write_sequence_to_file(fasta, args.output_file)
else:
# Copy the sequence to the clipboard
generate_output.ask_if_copy_to_clipboard(fasta, args.yestoall)
exit(0)
