def testWritePhotonList(outputFileName=None,firstSec=0,integrationTime=-1,doPixRemap=True):
'''
Test run of obsFile.writePhotonList. fileName can be used
to specify the output file name. If not specified, default
name/location is used.
Now includes test for pixel remapping....
'''
#Details of example obs file to run test on.
# run = 'PAL2012'
# date = '20121207'
# tstamp = '20121208-074649'
# calTstamp='20121208-070505'
# fluxTstamp='20121208-133002'
run = 'PAL2012'
date = '20121208'
tstamp = '20121209-120530'
centroidTstamp = '20121209-120530'
calTstamp='20121209-131132'
fluxTstamp='20121209-020416'
flatTstamp='20121209-021036'
if doPixRemap==True:
pixRemapFileName = FileName(run=run).pixRemap()
else:
pixRemapFileName = None
#Load up the obs file
obsFileName = FileName(run=run, date=date, tstamp=tstamp)
obsFile = ObsFile(obsFileName.obs())
#Load up associated calibrations
obsFile.loadWvlCalFile(FileName(run=run,date=date,tstamp=calTstamp).calSoln())
obsFile.loadFlatCalFile(FileName(run=run,date=date,tstamp=flatTstamp).flatSoln())
obsFile.loadFluxCalFile(FileName(run=run,date=date,tstamp=fluxTstamp).fluxSoln())
obsFile.loadTimeAdjustmentFile(FileName(run=run,date=date,tstamp=tstamp).timeAdjustments())
obsFile.loadHotPixCalFile(FileName(run=run,date=date,tstamp=tstamp).timeMask())
obsFile.loadCentroidListFile(FileName(run=run,date=date,tstamp=tstamp).centroidList())
#And write out the results....
obsFile.writePhotonList(outputFileName,firstSec,integrationTime,
pixRemapFileName=pixRemapFileName)
def testWritePhotonList(outputFileName=None,firstSec=0,integrationTime=-1,doPixRemap=False):
'''
Test run of obsFile.writePhotonList. fileName can be used
to specify the output file name. If not specified, default
name/location is used.
Now includes test for pixel remapping....
'''
#Details of example obs file to run test on.
# run = 'PAL2012'
# date = '20121207'
# tstamp = '20121208-074649'
# calTstamp='20121208-070505'
# fluxTstamp='20121208-133002'
run = 'PAL2013'
date = '20131209'
tstamp = '20131209-115553'
centroidTstamp = tstamp
calTstamp='20131209-132225'
fluxTstamp='ones'
flatTstamp='20131209'
if doPixRemap==True:
pixRemapFileName = FileName(run=run).pixRemap()
else:
pixRemapFileName = None
#Load up the obs file
obsFileName = FileName(run=run, date=date, tstamp=tstamp)
obsFile = ObsFile(obsFileName.obs())
obsFile.loadWvlCalFile(FileName(run=run,date=date,tstamp=calTstamp).calSoln())
obsFile.loadFlatCalFile(FileName(run=run,date=date,tstamp=flatTstamp).flatSoln())
obsFile.loadFluxCalFile(FileName(run=run,date=date,tstamp=fluxTstamp).fluxSoln())
HotPixFile = FileName(run=run,date=date,tstamp=tstamp).timeMask()
if not os.path.exists(HotPixFile): #check if hot pix file already exists
hp.findHotPixels(obsFileName.obs(),HotPixFile)
print "Flux file pixel mask saved to %s"%(HotPixFile)
obsFile.loadHotPixCalFile(HotPixFile)
print "Hot pixel mask loaded %s"%(HotPixFile)
#hz21 location alpha(2000) = 12h 13m 56.42s , delta(2000) = +32d 56' 30.8''
centroid_RA = '12:13:56.42'
centroid_DEC = '32:56:30.8'
CentFile = FileName(run=run,date=date,tstamp=tstamp).centroidList()
#print "checking centroid file", CentFile
#if not os.path.exists(CentFile): #check if cent pix file already exists
cent.centroidCalc(obsFile, centroid_RA, centroid_DEC, outputFileName = CentFile, guessTime=10, integrationTime=10)
# print "Flux file centroid cal saved to %s"%(CentFile)
obsFile.loadCentroidListFile(CentFile)
print "Centroid File loaded %s"%(CentFile)
#Load up associated calibrations
#obsFile.loadTimeAdjustmentFile(FileName(run=run,date=date,tstamp=tstamp).timeAdjustments())
#obsFile.loadHotPixCalFile(FileName(run=run,date=date,tstamp=tstamp).timeMask())
#obsFile.loadCentroidListFile(FileName(run=run,date=date,tstamp=tstamp).centroidList())
#And write out the results....
obsFile.writePhotonList(outputFileName,firstSec,integrationTime,
pixRemapFileName=pixRemapFileName)
#Read the results back in....
#photFile = photList.PhotFile(outputFilename)
print "Wrote photon list file: ", outputFileName
