def to_nineml(self, label):
connector_parameters = {}
for name in self.__class__.parameter_names:
connector_parameters[name] = getattr(self, name)
connection_rule = nineml.ConnectionRule(
name="connection rule for projection %s" % label,
definition=nineml.Definition(self.definition_url),
parameters=build_parameter_set(connector_parameters))
return connection_rule
def to_nineml(self):
if self.structure:
structure = nineml.Structure(
name="structure for %s" % self.label,
definition=nineml.Definition("%s/networkstructures/%s.xml" % (catalog_url, self.structure.__class__.__name__)),
parameters=build_parameter_set(self.structure.get_parameters())
)
else:
structure = None
population = nineml.Population(
name=self.label,
number=len(self),
prototype=self.celltype.to_nineml(self.label)[0],
positions=nineml.PositionList(structure=structure))
return population
def to_nineml(self):
if self.structure:
structure = nineml.Structure(
name="structure for %s" % self.label,
definition=nineml.Definition("%s/networkstructures/%s.xml" % (catalog_url, self.structure.__class__.__name__)),
parameters=build_parameter_set(self.structure.get_parameters())
)
else:
structure = None
population = nineml.Population(
name=self.label,
number=len(self),
prototype=self.celltype.to_nineml(self.label)[0],
positions=nineml.PositionList(structure=structure))
return population
def to_nineml(self):
connection_rule = self._method.to_nineml(self.label)
connection_type = nineml.ConnectionType(
name="connection type for projection %s" % self.label,
definition=nineml.Definition("%s/connectiontypes/static_synapse.xml" % catalog_url),
parameters=build_parameter_set(
{"weight": self._method.weights,
"delay": self._method.delays}))
synaptic_responses = self.post.get_synaptic_response_components(self.target)
synaptic_response, = synaptic_responses
projection = nineml.Projection(
name=self.label,
source=self.pre.to_nineml(), # or just pass ref, and then resolve later?
target=self.post.to_nineml(),
rule=connection_rule,
synaptic_response=synaptic_response,
connection_type=connection_type)
return projection
def to_nineml(self):
connection_rule = self._method.to_nineml(self.label)
connection_type = nineml.ConnectionType(
name="connection type for projection %s" % self.label,
definition=nineml.Definition("%s/connectiontypes/static_synapse.xml" % catalog_url),
parameters=build_parameter_set(
{"weight": self._method.weights,
"delay": self._method.delays}))
synaptic_responses = self.post.get_synaptic_response_components(self.target)
synaptic_response, = synaptic_responses
projection = nineml.Projection(
name=self.label,
source=self.pre.to_nineml(), # or just pass ref, and then resolve later?
target=self.post.to_nineml(),
rule=connection_rule,
synaptic_response=synaptic_response,
connection_type=connection_type)
return projection
def to_nineml(self):
return nineml.CurrentSourceType(
name="current source %d" % self.__class__.counter,
definition=nineml.Definition("%s/currentsources/%s" % (catalog_url, self.definition_file)),
parameters=build_parameter_set(self.parameters))
def to_nineml(self):
return nineml.CurrentSourceType(
name="current source %d" % self.__class__.counter,
definition=nineml.Definition("%s/currentsources/%s" %
(catalog_url, self.definition_file)),
parameters=build_parameter_set(self.parameters))