def main():
net = U_Net(img_ch=1, num_classes=3).to(device)
train_joint_transform = joint_transforms.Compose([
joint_transforms.Scale(384),
joint_transforms.RandomRotate(10),
joint_transforms.RandomHorizontallyFlip()
])
center_crop = joint_transforms.CenterCrop(crop_size)
train_input_transform = extended_transforms.ImgToTensor()
target_transform = extended_transforms.MaskToTensor()
make_dataset_fn = bladder.make_dataset_v2
train_set = bladder.Bladder(data_path,
'train',
joint_transform=train_joint_transform,
center_crop=center_crop,
transform=train_input_transform,
target_transform=target_transform,
make_dataset_fn=make_dataset_fn)
train_loader = DataLoader(train_set, batch_size=batch_size, shuffle=True)
if loss_name == 'dice_':
criterion = SoftDiceLossV2(activation='sigmoid',
num_classes=3).to(device)
elif loss_name == 'bcew_':
criterion = nn.BCEWithLogitsLoss().to(device)
optimizer = optim.Adam(net.parameters(), lr=1e-4)
train(train_loader, net, criterion, optimizer, n_epoch, 0)
def transform_image_and_mask_tt(self, image, mask, angle=None, crop_size=None):
assert self.use_iaa == False
transforms = [JT.RandomHorizontallyFlip()]
if crop_size is not None:
transforms.append(JT.RandomCrop(size=crop_size))
if angle is not None:
transforms.append(JT.RandomRotate(degree=angle))
jt_random = JT.RandomOrderApply(transforms)
jt_transform = JT.Compose([
JT.ToPILImage(),
jt_random,
JT.ToNumpy(),
])
return jt_transform(image, mask)
def main():
net = PSPNet(num_classes=voc.num_classes).cuda()
if len(args['snapshot']) == 0:
# net.load_state_dict(torch.load(os.path.join(ckpt_path, 'cityscapes (coarse)-psp_net', 'xx.pth')))
curr_epoch = 1
args['best_record'] = {
'epoch': 0,
'val_loss': 1e10,
'acc': 0,
'acc_cls': 0,
'mean_iu': 0,
'fwavacc': 0
}
else:
print('training resumes from ' + args['snapshot'])
net.load_state_dict(
torch.load(os.path.join(ckpt_path, exp_name, args['snapshot'])))
split_snapshot = args['snapshot'].split('_')
curr_epoch = int(split_snapshot[1]) + 1
args['best_record'] = {
'epoch': int(split_snapshot[1]),
'val_loss': float(split_snapshot[3]),
'acc': float(split_snapshot[5]),
'acc_cls': float(split_snapshot[7]),
'mean_iu': float(split_snapshot[9]),
'fwavacc': float(split_snapshot[11])
}
net.train()
mean_std = ([0.485, 0.456, 0.406], [0.229, 0.224, 0.225])
train_joint_transform = joint_transforms.Compose([
joint_transforms.Scale(args['longer_size']),
joint_transforms.RandomRotate(10),
joint_transforms.RandomHorizontallyFlip()
])
sliding_crop = joint_transforms.SlidingCrop(args['crop_size'],
args['stride_rate'],
voc.ignore_label)
train_input_transform = standard_transforms.Compose([
standard_transforms.ToTensor(),
standard_transforms.Normalize(*mean_std)
])
val_input_transform = standard_transforms.Compose([
standard_transforms.ToTensor(),
standard_transforms.Normalize(*mean_std)
])
target_transform = extended_transforms.MaskToTensor()
visualize = standard_transforms.Compose([
standard_transforms.Resize(args['val_img_display_size']),
standard_transforms.ToTensor()
])
train_set = voc.VOC('train',
joint_transform=train_joint_transform,
sliding_crop=sliding_crop,
transform=train_input_transform,
target_transform=target_transform)
train_loader = DataLoader(train_set,
batch_size=args['train_batch_size'],
num_workers=1,
shuffle=True,
drop_last=True)
val_set = voc.VOC('val',
transform=val_input_transform,
sliding_crop=sliding_crop,
target_transform=target_transform)
val_loader = DataLoader(val_set,
batch_size=1,
num_workers=1,
shuffle=False,
drop_last=True)
criterion = CrossEntropyLoss2d(size_average=True,
ignore_index=voc.ignore_label).cuda()
optimizer = optim.SGD([{
'params': [
param
for name, param in net.named_parameters() if name[-4:] == 'bias'
],
'lr':
2 * args['lr']
}, {
'params': [
param
for name, param in net.named_parameters() if name[-4:] != 'bias'
],
'lr':
args['lr'],
'weight_decay':
args['weight_decay']
}],
momentum=args['momentum'],
nesterov=True)
if len(args['snapshot']) > 0:
optimizer.load_state_dict(
torch.load(
os.path.join(ckpt_path, exp_name, 'opt_' + args['snapshot'])))
optimizer.param_groups[0]['lr'] = 2 * args['lr']
optimizer.param_groups[1]['lr'] = args['lr']
check_mkdir(ckpt_path)
check_mkdir(os.path.join(ckpt_path, exp_name))
open(
os.path.join(ckpt_path, exp_name,
str(datetime.datetime.now()) + '.txt'),
'w').write(str(args) + '\n\n')
train(train_loader, net, criterion, optimizer, curr_epoch, args,
val_loader, visualize)
def main(train_args):
print('No of classes', doc.num_classes)
if train_args['network'] == 'psp':
net = PSPNet(num_classes=doc.num_classes,
resnet=resnet,
res_path=res_path).cuda()
elif train_args['network'] == 'mfcn':
net = MFCN(num_classes=doc.num_classes, use_aux=True).cuda()
elif train_args['network'] == 'psppen':
net = PSPNet(num_classes=doc.num_classes,
resnet=resnet,
res_path=res_path).cuda()
print("number of cuda devices = ", torch.cuda.device_count())
if len(train_args['snapshot']) == 0:
curr_epoch = 1
train_args['best_record'] = {
'epoch': 0,
'val_loss': 1e10,
'acc': 0,
'acc_cls': 0,
'mean_iu': 0,
'fwavacc': 0
}
else:
print('training resumes from ' + train_args['snapshot'])
net.load_state_dict(
torch.load(
os.path.join(ckpt_path, 'model_' + exp_name,
train_args['snapshot'])))
split_snapshot = train_args['snapshot'].split('_')
curr_epoch = int(split_snapshot[1]) + 1
train_args['best_record'] = {
'epoch': int(split_snapshot[1]),
'val_loss': float(split_snapshot[3]),
'acc': float(split_snapshot[5]),
'acc_cls': float(split_snapshot[7]),
'mean_iu': float(split_snapshot[9]),
'fwavacc': float(split_snapshot[11])
}
net = torch.nn.DataParallel(net,
device_ids=list(
range(torch.cuda.device_count())))
net.train()
mean_std = ([0.9584, 0.9588, 0.9586], [0.1246, 0.1223, 0.1224])
weight = torch.FloatTensor(doc.num_classes)
#weight[0] = 1.0/0.5511 # background
train_simul_transform = simul_transforms.Compose([
simul_transforms.RandomSized(train_args['input_size']),
simul_transforms.RandomRotate(3),
#simul_transforms.RandomHorizontallyFlip()
simul_transforms.Scale(train_args['input_size']),
simul_transforms.CenterCrop(train_args['input_size'])
])
val_simul_transform = simul_transforms.Scale(train_args['input_size'])
train_input_transform = standard_transforms.Compose([
extended_transforms.RandomGaussianBlur(),
standard_transforms.ToTensor(),
standard_transforms.Normalize(*mean_std)
])
val_input_transform = standard_transforms.Compose([
standard_transforms.ToTensor(),
standard_transforms.Normalize(*mean_std)
])
target_transform = extended_transforms.MaskToTensor()
train_set = doc.DOC('train',
Dataroot,
joint_transform=train_simul_transform,
transform=train_input_transform,
target_transform=target_transform)
train_loader = DataLoader(train_set,
batch_size=train_args['train_batch_size'],
num_workers=1,
shuffle=True,
drop_last=True)
train_loader_temp = DataLoader(train_set,
batch_size=1,
num_workers=1,
shuffle=True,
drop_last=True)
train_args['No_train_images'] = len(train_loader_temp)
del train_loader_temp
if train_args['No_train_images'] == 87677:
train_args['Type_of_train_image'] = 'All Synthetic slide image'
elif train_args['No_train_images'] == 150:
train_args['Type_of_train_image'] = 'Real image'
elif train_args['No_train_images'] == 84641:
train_args['Type_of_train_image'] = 'Synthetic image'
elif train_args['No_train_images'] == 151641:
train_args['Type_of_train_image'] = 'Real + Synthetic image'
val_set = doc.DOC('val',
Dataroot,
joint_transform=val_simul_transform,
transform=val_input_transform,
target_transform=target_transform)
val_loader = DataLoader(val_set,
batch_size=1,
num_workers=1,
shuffle=False,
drop_last=True)
#criterion = CrossEntropyLoss2d(weight = weight, size_average = True, ignore_index = doc.ignore_label).cuda()
criterion = CrossEntropyLoss2d(size_average=True,
ignore_index=doc.ignore_label).cuda()
optimizer = optim.SGD([{
'params': [
param
for name, param in net.named_parameters() if name[-4:] == 'bias'
],
'lr':
2 * train_args['lr']
}, {
'params': [
param
for name, param in net.named_parameters() if name[-4:] != 'bias'
],
'lr':
train_args['lr'],
'weight_decay':
train_args['weight_decay']
}],
momentum=train_args['momentum'])
if len(train_args['snapshot']) > 0:
optimizer.load_state_dict(
torch.load(
os.path.join(ckpt_path, 'model_' + exp_name,
'opt_' + train_args['snapshot'])))
optimizer.param_groups[0]['lr'] = 2 * train_args['lr']
optimizer.param_groups[1]['lr'] = train_args['lr']
check_mkdir(ckpt_path)
check_mkdir(os.path.join(ckpt_path, exp_name))
open(
os.path.join(ckpt_path, exp_name,
str(datetime.datetime.now()) + '.txt'),
'w').write(str(train_args) + '\n\n')
train(train_loader, net, criterion, optimizer, curr_epoch, train_args,
val_loader)
def train_with_ignite(networks, dataset, data_dir, batch_size, img_size,
epochs, lr, momentum, num_workers, optimizer, logger):
from ignite.engine import Events, create_supervised_trainer, create_supervised_evaluator
from ignite.metrics import Loss
from utils.metrics import MultiThresholdMeasures, Accuracy, IoU, F1score
# device
device = 'cuda' if torch.cuda.is_available() else 'cpu'
# build model
model = get_network(networks)
# log model summary
input_size = (3, img_size, img_size)
summarize_model(model.to(device), input_size, logger, batch_size, device)
# build loss
loss = torch.nn.BCEWithLogitsLoss()
# build optimizer and scheduler
model_optimizer = get_optimizer(optimizer, model, lr, momentum)
lr_scheduler = torch.optim.lr_scheduler.ReduceLROnPlateau(model_optimizer)
# transforms on both image and mask
train_joint_transforms = jnt_trnsf.Compose([
jnt_trnsf.RandomCrop(img_size),
jnt_trnsf.RandomRotate(5),
jnt_trnsf.RandomHorizontallyFlip()
])
# transforms only on images
train_image_transforms = std_trnsf.Compose([
std_trnsf.ColorJitter(0.05, 0.05, 0.05, 0.05),
std_trnsf.ToTensor(),
std_trnsf.Normalize([0.485, 0.456, 0.406], [0.229, 0.224, 0.225])
])
test_joint_transforms = jnt_trnsf.Compose([jnt_trnsf.Safe32Padding()])
test_image_transforms = std_trnsf.Compose([
std_trnsf.ToTensor(),
std_trnsf.Normalize([0.485, 0.456, 0.406], [0.229, 0.224, 0.225])
])
# transforms only on mask
mask_transforms = std_trnsf.Compose([std_trnsf.ToTensor()])
# build train / test loader
train_loader = get_loader(dataset=dataset,
data_dir=data_dir,
train=True,
joint_transforms=train_joint_transforms,
image_transforms=train_image_transforms,
mask_transforms=mask_transforms,
batch_size=batch_size,
shuffle=False,
num_workers=num_workers)
test_loader = get_loader(dataset=dataset,
data_dir=data_dir,
train=False,
joint_transforms=test_joint_transforms,
image_transforms=test_image_transforms,
mask_transforms=mask_transforms,
batch_size=1,
shuffle=False,
num_workers=num_workers)
# build trainer / evaluator with ignite
trainer = create_supervised_trainer(model,
model_optimizer,
loss,
device=device)
measure = MultiThresholdMeasures()
evaluator = create_supervised_evaluator(model,
metrics={
'': measure,
'pix-acc': Accuracy(measure),
'iou': IoU(measure),
'loss': Loss(loss),
'f1': F1score(measure),
},
device=device)
# initialize state variable for checkpoint
state = update_state(model.state_dict(), 0, 0, 0, 0, 0)
# make ckpt path
ckpt_root = './ckpt/'
filename = '{network}_{optimizer}_lr_{lr}_epoch_{epoch}.pth'
ckpt_path = os.path.join(ckpt_root, filename)
# execution after every training iteration
@trainer.on(Events.ITERATION_COMPLETED)
def log_training_loss(trainer):
num_iter = (trainer.state.iteration - 1) % len(train_loader) + 1
if num_iter % 20 == 0:
logger.info("Epoch[{}] Iter[{:03d}] Loss: {:.2f}".format(
trainer.state.epoch, num_iter, trainer.state.output))
# execution after every training epoch
@trainer.on(Events.EPOCH_COMPLETED)
def log_training_results(trainer):
# evaluate on training set
evaluator.run(train_loader)
metrics = evaluator.state.metrics
logger.info(
"Training Results - Epoch: {} Avg-loss: {:.3f}\n Pix-acc: {}\n IoU: {}\n F1: {}\n"
.format(trainer.state.epoch, metrics['loss'],
str(metrics['pix-acc']), str(metrics['iou']),
str(metrics['f1'])))
# update state
update_state(weight=model.state_dict(),
train_loss=metrics['loss'],
val_loss=state['val_loss'],
val_pix_acc=state['val_pix_acc'],
val_iou=state['val_iou'],
val_f1=state['val_f1'])
# execution after every epoch
@trainer.on(Events.EPOCH_COMPLETED)
def log_validation_results(trainer):
# evaluate test(validation) set
evaluator.run(test_loader)
metrics = evaluator.state.metrics
logger.info(
"Validation Results - Epoch: {} Avg-loss: {:.3f}\n Pix-acc: {}\n IoU: {}\n F1: {}\n"
.format(trainer.state.epoch, metrics['loss'],
str(metrics['pix-acc']), str(metrics['iou']),
str(metrics['f1'])))
# update scheduler
lr_scheduler.step(metrics['loss'])
# update and save state
update_state(weight=model.state_dict(),
train_loss=state['train_loss'],
val_loss=metrics['loss'],
val_pix_acc=metrics['pix-acc'],
val_iou=metrics['iou'],
val_f1=metrics['f1'])
path = ckpt_path.format(network=networks,
optimizer=optimizer,
lr=lr,
epoch=trainer.state.epoch)
save_ckpt_file(path, state)
trainer.run(train_loader, max_epochs=epochs)
def train_without_ignite(model,
loss,
batch_size,
img_size,
epochs,
lr,
num_workers,
optimizer,
logger,
gray_image=False,
scheduler=None,
viz=True):
import visdom
from utils.metrics import Accuracy, IoU
DEFAULT_PORT = 8097
DEFAULT_HOSTNAME = "http://localhost"
if viz:
vis = visdom.Visdom(port=DEFAULT_PORT, server=DEFAULT_HOSTNAME)
device = 'cuda' if torch.cuda.is_available() else 'cpu'
data_loader = {}
joint_transforms = jnt_trnsf.Compose([
jnt_trnsf.RandomCrop(img_size),
jnt_trnsf.RandomRotate(5),
jnt_trnsf.RandomHorizontallyFlip()
])
train_image_transforms = std_trnsf.Compose([
std_trnsf.ColorJitter(0.05, 0.05, 0.05, 0.05),
std_trnsf.ToTensor(),
std_trnsf.Normalize([0.485, 0.456, 0.406], [0.229, 0.224, 0.225])
])
test_joint_transforms = jnt_trnsf.Compose([jnt_trnsf.Safe32Padding()])
test_image_transforms = std_trnsf.Compose([
std_trnsf.ToTensor(),
std_trnsf.Normalize([0.485, 0.456, 0.406], [0.229, 0.224, 0.225])
])
mask_transforms = std_trnsf.Compose([std_trnsf.ToTensor()])
data_loader['train'] = get_loader(dataset='figaro',
train=True,
joint_transforms=joint_transforms,
image_transforms=train_image_transforms,
mask_transforms=mask_transforms,
batch_size=batch_size,
shuffle=True,
num_workers=num_workers,
gray_image=gray_image)
data_loader['test'] = get_loader(dataset='figaro',
train=False,
joint_transforms=test_joint_transforms,
image_transforms=test_image_transforms,
mask_transforms=mask_transforms,
batch_size=1,
shuffle=True,
num_workers=num_workers,
gray_image=gray_image)
for epoch in range(epochs):
for phase in ['train', 'test']:
if phase == 'train':
model.train(True)
else:
prev_grad_state = torch.is_grad_enabled()
torch.set_grad_enabled(False)
model.train(False)
running_loss = 0.0
for i, data in enumerate(tqdm(data_loader[phase],
file=sys.stdout)):
if i == len(data_loader[phase]) - 1: break
data_ = [
t.to(device) if isinstance(t, torch.Tensor) else t
for t in data
]
if gray_image:
img, mask, gray = data_
else:
img, mask = data_
model.zero_grad()
pred_mask = model(img)
if gray_image:
l = loss(pred_mask, mask, gray)
else:
l = loss(pred_mask, mask)
if phase == 'train':
l.backward()
optimizer.step()
running_loss += l.item()
epoch_loss = running_loss / len(data_loader[phase])
if phase == 'train':
logger.info(
f"Training Results - Epoch: {epoch} Avg-loss: {epoch_loss:.3f}"
)
if viz:
vis.images(
[
np.clip(pred_mask.detach().cpu().numpy()[0], 0, 1),
mask.detach().cpu().numpy()[0]
],
opts=dict(title=f'pred img for {epoch}-th iter'))
if phase == 'test':
if viz:
vis.images(
[
np.clip(pred_mask.detach().cpu().numpy()[0], 0, 1),
mask.detach().cpu().numpy()[0]
],
opts=dict(title=f'pred img for {epoch}-th iter'))
logger.info(
f"Test Results - Epoch: {epoch} Avg-loss: {epoch_loss:.3f}"
)
if scheduler: scheduler.step(epoch_loss)
torch.set_grad_enabled(prev_grad_state)
def train_with_correspondences(save_folder, startnet, args):
device = torch.device("cuda:0" if torch.cuda.is_available() else "cpu")
check_mkdir(save_folder)
writer = SummaryWriter(save_folder)
# Network and weight loading
model_config = model_configs.PspnetCityscapesConfig()
net = model_config.init_network().to(device)
if args['snapshot'] == 'latest':
args['snapshot'] = get_latest_network_name(save_folder)
if len(args['snapshot']) == 0: # If start from beginning
state_dict = torch.load(startnet)
# needed since we slightly changed the structure of the network in
# pspnet
state_dict = rename_keys_to_match(state_dict)
net.load_state_dict(state_dict) # load original weights
start_iter = 0
args['best_record'] = {
'iter': 0,
'val_loss': 1e10,
'acc': 0,
'acc_cls': 0,
'mean_iu': 0,
'fwavacc': 0
}
else: # If continue training
print('training resumes from ' + args['snapshot'])
net.load_state_dict(
torch.load(os.path.join(save_folder,
args['snapshot']))) # load weights
split_snapshot = args['snapshot'].split('_')
start_iter = int(split_snapshot[1])
with open(os.path.join(save_folder, 'bestval.txt')) as f:
best_val_dict_str = f.read()
args['best_record'] = eval(best_val_dict_str.rstrip())
net.train()
freeze_bn(net)
# Data loading setup
if args['corr_set'] == 'rc':
corr_set_config = data_configs.RobotcarConfig()
elif args['corr_set'] == 'cmu':
corr_set_config = data_configs.CmuConfig()
sliding_crop_im = joint_transforms.SlidingCropImageOnly(
713, args['stride_rate'])
input_transform = model_config.input_transform
pre_validation_transform = model_config.pre_validation_transform
target_transform = extended_transforms.MaskToTensor()
train_joint_transform_seg = joint_transforms.Compose([
joint_transforms.Resize(1024),
joint_transforms.RandomRotate(10),
joint_transforms.RandomHorizontallyFlip(),
joint_transforms.RandomCrop(713)
])
train_joint_transform_corr = corr_transforms.Compose([
corr_transforms.CorrResize(1024),
corr_transforms.CorrRandomCrop(713)
])
# keep list of segmentation loaders and validators
seg_loaders = list()
validators = list()
# Correspondences
corr_set = correspondences.Correspondences(
corr_set_config.correspondence_path,
corr_set_config.correspondence_im_path,
input_size=(713, 713),
mean_std=model_config.mean_std,
input_transform=input_transform,
joint_transform=train_joint_transform_corr)
corr_loader = DataLoader(corr_set,
batch_size=args['train_batch_size'],
num_workers=args['n_workers'],
shuffle=True)
# Cityscapes Training
c_config = data_configs.CityscapesConfig()
seg_set_cs = cityscapes.CityScapes(
c_config.train_im_folder,
c_config.train_seg_folder,
c_config.im_file_ending,
c_config.seg_file_ending,
id_to_trainid=c_config.id_to_trainid,
joint_transform=train_joint_transform_seg,
sliding_crop=None,
transform=input_transform,
target_transform=target_transform)
seg_loader_cs = DataLoader(seg_set_cs,
batch_size=args['train_batch_size'],
num_workers=args['n_workers'],
shuffle=True)
seg_loaders.append(seg_loader_cs)
# Cityscapes Validation
val_set_cs = cityscapes.CityScapes(
c_config.val_im_folder,
c_config.val_seg_folder,
c_config.im_file_ending,
c_config.seg_file_ending,
id_to_trainid=c_config.id_to_trainid,
sliding_crop=sliding_crop_im,
transform=input_transform,
target_transform=target_transform,
transform_before_sliding=pre_validation_transform)
val_loader_cs = DataLoader(val_set_cs,
batch_size=1,
num_workers=args['n_workers'],
shuffle=False)
validator_cs = Validator(val_loader_cs,
n_classes=c_config.n_classes,
save_snapshot=False,
extra_name_str='Cityscapes')
validators.append(validator_cs)
# Vistas Training and Validation
if args['include_vistas']:
v_config = data_configs.VistasConfig(
use_subsampled_validation_set=True, use_cityscapes_classes=True)
seg_set_vis = cityscapes.CityScapes(
v_config.train_im_folder,
v_config.train_seg_folder,
v_config.im_file_ending,
v_config.seg_file_ending,
id_to_trainid=v_config.id_to_trainid,
joint_transform=train_joint_transform_seg,
sliding_crop=None,
transform=input_transform,
target_transform=target_transform)
seg_loader_vis = DataLoader(seg_set_vis,
batch_size=args['train_batch_size'],
num_workers=args['n_workers'],
shuffle=True)
seg_loaders.append(seg_loader_vis)
val_set_vis = cityscapes.CityScapes(
v_config.val_im_folder,
v_config.val_seg_folder,
v_config.im_file_ending,
v_config.seg_file_ending,
id_to_trainid=v_config.id_to_trainid,
sliding_crop=sliding_crop_im,
transform=input_transform,
target_transform=target_transform,
transform_before_sliding=pre_validation_transform)
val_loader_vis = DataLoader(val_set_vis,
batch_size=1,
num_workers=args['n_workers'],
shuffle=False)
validator_vis = Validator(val_loader_vis,
n_classes=v_config.n_classes,
save_snapshot=False,
extra_name_str='Vistas')
validators.append(validator_vis)
else:
seg_loader_vis = None
map_validator = None
# Extra Training
extra_seg_set = cityscapes.CityScapes(
corr_set_config.train_im_folder,
corr_set_config.train_seg_folder,
corr_set_config.im_file_ending,
corr_set_config.seg_file_ending,
id_to_trainid=corr_set_config.id_to_trainid,
joint_transform=train_joint_transform_seg,
sliding_crop=None,
transform=input_transform,
target_transform=target_transform)
extra_seg_loader = DataLoader(extra_seg_set,
batch_size=args['train_batch_size'],
num_workers=args['n_workers'],
shuffle=True)
seg_loaders.append(extra_seg_loader)
# Extra Validation
extra_val_set = cityscapes.CityScapes(
corr_set_config.val_im_folder,
corr_set_config.val_seg_folder,
corr_set_config.im_file_ending,
corr_set_config.seg_file_ending,
id_to_trainid=corr_set_config.id_to_trainid,
sliding_crop=sliding_crop_im,
transform=input_transform,
target_transform=target_transform,
transform_before_sliding=pre_validation_transform)
extra_val_loader = DataLoader(extra_val_set,
batch_size=1,
num_workers=args['n_workers'],
shuffle=False)
extra_validator = Validator(extra_val_loader,
n_classes=corr_set_config.n_classes,
save_snapshot=True,
extra_name_str='Extra')
validators.append(extra_validator)
# Loss setup
if args['corr_loss_type'] == 'class':
corr_loss_fct = CorrClassLoss(input_size=[713, 713])
else:
corr_loss_fct = FeatureLoss(
input_size=[713, 713],
loss_type=args['corr_loss_type'],
feat_dist_threshold_match=args['feat_dist_threshold_match'],
feat_dist_threshold_nomatch=args['feat_dist_threshold_nomatch'],
n_not_matching=0)
seg_loss_fct = torch.nn.CrossEntropyLoss(
reduction='elementwise_mean',
ignore_index=cityscapes.ignore_label).to(device)
# Optimizer setup
optimizer = optim.SGD([{
'params': [
param for name, param in net.named_parameters()
if name[-4:] == 'bias' and param.requires_grad
],
'lr':
2 * args['lr']
}, {
'params': [
param for name, param in net.named_parameters()
if name[-4:] != 'bias' and param.requires_grad
],
'lr':
args['lr'],
'weight_decay':
args['weight_decay']
}],
momentum=args['momentum'],
nesterov=True)
if len(args['snapshot']) > 0:
optimizer.load_state_dict(
torch.load(os.path.join(save_folder, 'opt_' + args['snapshot'])))
optimizer.param_groups[0]['lr'] = 2 * args['lr']
optimizer.param_groups[1]['lr'] = args['lr']
open(os.path.join(save_folder,
str(datetime.datetime.now()) + '.txt'),
'w').write(str(args) + '\n\n')
if len(args['snapshot']) == 0:
f_handle = open(os.path.join(save_folder, 'log.log'), 'w', buffering=1)
else:
clean_log_before_continuing(os.path.join(save_folder, 'log.log'),
start_iter)
f_handle = open(os.path.join(save_folder, 'log.log'), 'a', buffering=1)
##########################################################################
#
# MAIN TRAINING CONSISTS OF ALL SEGMENTATION LOSSES AND A CORRESPONDENCE LOSS
#
##########################################################################
softm = torch.nn.Softmax2d()
val_iter = 0
train_corr_loss = AverageMeter()
train_seg_cs_loss = AverageMeter()
train_seg_extra_loss = AverageMeter()
train_seg_vis_loss = AverageMeter()
seg_loss_meters = list()
seg_loss_meters.append(train_seg_cs_loss)
if args['include_vistas']:
seg_loss_meters.append(train_seg_vis_loss)
seg_loss_meters.append(train_seg_extra_loss)
curr_iter = start_iter
for i in range(args['max_iter']):
optimizer.param_groups[0]['lr'] = 2 * args['lr'] * (
1 - float(curr_iter) / args['max_iter'])**args['lr_decay']
optimizer.param_groups[1]['lr'] = args['lr'] * (
1 - float(curr_iter) / args['max_iter'])**args['lr_decay']
#######################################################################
# SEGMENTATION UPDATE STEP
#######################################################################
#
for si, seg_loader in enumerate(seg_loaders):
# get segmentation training sample
inputs, gts = next(iter(seg_loader))
slice_batch_pixel_size = inputs.size(0) * inputs.size(
2) * inputs.size(3)
inputs = inputs.to(device)
gts = gts.to(device)
optimizer.zero_grad()
outputs, aux = net(inputs)
main_loss = args['seg_loss_weight'] * seg_loss_fct(outputs, gts)
aux_loss = args['seg_loss_weight'] * seg_loss_fct(aux, gts)
loss = main_loss + 0.4 * aux_loss
loss.backward()
optimizer.step()
seg_loss_meters[si].update(main_loss.item(),
slice_batch_pixel_size)
#######################################################################
# CORRESPONDENCE UPDATE STEP
#######################################################################
if args['corr_loss_weight'] > 0 and args[
'n_iterations_before_corr_loss'] < curr_iter:
img_ref, img_other, pts_ref, pts_other, weights = next(
iter(corr_loader))
# Transfer data to device
# img_ref is from the "good" sequence with generally better
# segmentation results
img_ref = img_ref.to(device)
img_other = img_other.to(device)
pts_ref = [p.to(device) for p in pts_ref]
pts_other = [p.to(device) for p in pts_other]
weights = [w.to(device) for w in weights]
# Forward pass
if args['corr_loss_type'] == 'hingeF': # Works on features
net.output_all = True
with torch.no_grad():
output_feat_ref, aux_feat_ref, output_ref, aux_ref = net(
img_ref)
output_feat_other, aux_feat_other, output_other, aux_other = net(
img_other
) # output1 must be last to backpropagate derivative correctly
net.output_all = False
else: # Works on class probs
with torch.no_grad():
output_ref, aux_ref = net(img_ref)
if args['corr_loss_type'] != 'hingeF' and args[
'corr_loss_type'] != 'hingeC':
output_ref = softm(output_ref)
aux_ref = softm(aux_ref)
# output1 must be last to backpropagate derivative correctly
output_other, aux_other = net(img_other)
if args['corr_loss_type'] != 'hingeF' and args[
'corr_loss_type'] != 'hingeC':
output_other = softm(output_other)
aux_other = softm(aux_other)
# Correspondence filtering
pts_ref_orig, pts_other_orig, weights_orig, batch_inds_to_keep_orig = correspondences.refine_correspondence_sample(
output_ref,
output_other,
pts_ref,
pts_other,
weights,
remove_same_class=args['remove_same_class'],
remove_classes=args['classes_to_ignore'])
pts_ref_orig = [
p for b, p in zip(batch_inds_to_keep_orig, pts_ref_orig)
if b.item() > 0
]
pts_other_orig = [
p for b, p in zip(batch_inds_to_keep_orig, pts_other_orig)
if b.item() > 0
]
weights_orig = [
p for b, p in zip(batch_inds_to_keep_orig, weights_orig)
if b.item() > 0
]
if args['corr_loss_type'] == 'hingeF':
# remove entire samples if needed
output_vals_ref = output_feat_ref[batch_inds_to_keep_orig]
output_vals_other = output_feat_other[batch_inds_to_keep_orig]
else:
# remove entire samples if needed
output_vals_ref = output_ref[batch_inds_to_keep_orig]
output_vals_other = output_other[batch_inds_to_keep_orig]
pts_ref_aux, pts_other_aux, weights_aux, batch_inds_to_keep_aux = correspondences.refine_correspondence_sample(
aux_ref,
aux_other,
pts_ref,
pts_other,
weights,
remove_same_class=args['remove_same_class'],
remove_classes=args['classes_to_ignore'])
pts_ref_aux = [
p for b, p in zip(batch_inds_to_keep_aux, pts_ref_aux)
if b.item() > 0
]
pts_other_aux = [
p for b, p in zip(batch_inds_to_keep_aux, pts_other_aux)
if b.item() > 0
]
weights_aux = [
p for b, p in zip(batch_inds_to_keep_aux, weights_aux)
if b.item() > 0
]
if args['corr_loss_type'] == 'hingeF':
# remove entire samples if needed
aux_vals_ref = aux_feat_ref[batch_inds_to_keep_orig]
aux_vals_other = aux_feat_other[batch_inds_to_keep_orig]
else:
# remove entire samples if needed
aux_vals_ref = aux_ref[batch_inds_to_keep_aux]
aux_vals_other = aux_other[batch_inds_to_keep_aux]
optimizer.zero_grad()
# correspondence loss
if output_vals_ref.size(0) > 0:
loss_corr_hr = corr_loss_fct(output_vals_ref,
output_vals_other, pts_ref_orig,
pts_other_orig, weights_orig)
else:
loss_corr_hr = 0 * output_vals_other.sum()
if aux_vals_ref.size(0) > 0:
loss_corr_aux = corr_loss_fct(
aux_vals_ref, aux_vals_other, pts_ref_aux, pts_other_aux,
weights_aux) # use output from img1 as "reference"
else:
loss_corr_aux = 0 * aux_vals_other.sum()
loss_corr = args['corr_loss_weight'] * \
(loss_corr_hr + 0.4 * loss_corr_aux)
loss_corr.backward()
optimizer.step()
train_corr_loss.update(loss_corr.item())
#######################################################################
# LOGGING ETC
#######################################################################
curr_iter += 1
val_iter += 1
writer.add_scalar('train_seg_loss_cs', train_seg_cs_loss.avg,
curr_iter)
writer.add_scalar('train_seg_loss_extra', train_seg_extra_loss.avg,
curr_iter)
writer.add_scalar('train_seg_loss_vis', train_seg_vis_loss.avg,
curr_iter)
writer.add_scalar('train_corr_loss', train_corr_loss.avg, curr_iter)
writer.add_scalar('lr', optimizer.param_groups[1]['lr'], curr_iter)
if (i + 1) % args['print_freq'] == 0:
str2write = '[iter %d / %d], [train corr loss %.5f] , [seg cs loss %.5f], [seg vis loss %.5f], [seg extra loss %.5f]. [lr %.10f]' % (
curr_iter, len(corr_loader), train_corr_loss.avg,
train_seg_cs_loss.avg, train_seg_vis_loss.avg,
train_seg_extra_loss.avg, optimizer.param_groups[1]['lr'])
print(str2write)
f_handle.write(str2write + "\n")
if val_iter >= args['val_interval']:
val_iter = 0
for validator in validators:
validator.run(net,
optimizer,
args,
curr_iter,
save_folder,
f_handle,
writer=writer)
# Post training
f_handle.close()
writer.close()
def main(train_args):
net = PSPNet(num_classes=voc.num_classes).cuda()
if len(train_args['snapshot']) == 0:
curr_epoch = 1
train_args['best_record'] = {'epoch': 0, 'val_loss': 1e10, 'acc': 0, 'acc_cls': 0, 'mean_iu': 0, 'fwavacc': 0}
else:
print ('training resumes from ' + train_args['snapshot'])
net.load_state_dict(torch.load(os.path.join(ckpt_path, exp_name, train_args['snapshot'])))
split_snapshot = train_args['snapshot'].split('_')
curr_epoch = int(split_snapshot[1]) + 1
train_args['best_record'] = {'epoch': int(split_snapshot[1]), 'val_loss': float(split_snapshot[3]),
'acc': float(split_snapshot[5]), 'acc_cls': float(split_snapshot[7]),
'mean_iu': float(split_snapshot[9]), 'fwavacc': float(split_snapshot[11])}
net.train()
mean_std = ([0.485, 0.456, 0.406], [0.229, 0.224, 0.225])
train_simul_transform = simul_transforms.Compose([
simul_transforms.RandomSized(train_args['input_size']),
simul_transforms.RandomRotate(10),
simul_transforms.RandomHorizontallyFlip()
])
val_simul_transform = simul_transforms.Scale(train_args['input_size'])
train_input_transform = standard_transforms.Compose([
extended_transforms.RandomGaussianBlur(),
standard_transforms.ToTensor(),
standard_transforms.Normalize(*mean_std)
])
val_input_transform = standard_transforms.Compose([
standard_transforms.ToTensor(),
standard_transforms.Normalize(*mean_std)
])
target_transform = extended_transforms.MaskToTensor()
restore_transform = standard_transforms.Compose([
extended_transforms.DeNormalize(*mean_std),
standard_transforms.ToPILImage(),
])
visualize = standard_transforms.Compose([
standard_transforms.Scale(400),
standard_transforms.CenterCrop(400),
standard_transforms.ToTensor()
])
train_set = voc.VOC('train', joint_transform=train_simul_transform, transform=train_input_transform,
target_transform=target_transform)
train_loader = DataLoader(train_set, batch_size=train_args['train_batch_size'], num_workers=8, shuffle=True)
val_set = voc.VOC('val', joint_transform=val_simul_transform, transform=val_input_transform,
target_transform=target_transform)
val_loader = DataLoader(val_set, batch_size=1, num_workers=8, shuffle=False)
criterion = CrossEntropyLoss2d(size_average=True, ignore_index=voc.ignore_label).cuda()
optimizer = optim.SGD([
{'params': [param for name, param in net.named_parameters() if name[-4:] == 'bias'],
'lr': 2 * train_args['lr']},
{'params': [param for name, param in net.named_parameters() if name[-4:] != 'bias'],
'lr': train_args['lr'], 'weight_decay': train_args['weight_decay']}
], momentum=train_args['momentum'])
if len(train_args['snapshot']) > 0:
optimizer.load_state_dict(torch.load(os.path.join(ckpt_path, exp_name, 'opt_' + train_args['snapshot'])))
optimizer.param_groups[0]['lr'] = 2 * train_args['lr']
optimizer.param_groups[1]['lr'] = train_args['lr']
check_mkdir(ckpt_path)
check_mkdir(os.path.join(ckpt_path, exp_name))
open(os.path.join(ckpt_path, exp_name, str(datetime.datetime.now()) + '.txt'), 'w').write(str(train_args) + '\n\n')
train(train_loader, net, criterion, optimizer, curr_epoch, train_args, val_loader, restore_transform, visualize)
def main():
# args = parse_args()
torch.backends.cudnn.benchmark = True
os.environ["CUDA_VISIBLE_DEVICES"] = '0,1'
device = torch.device('cuda:0' if torch.cuda.is_available() else "cpu")
# # if args.seed:
# random.seed(args.seed)
# np.random.seed(args.seed)
# torch.manual_seed(args.seed)
# # if args.gpu:
# torch.cuda.manual_seed_all(args.seed)
seed = 63
random.seed(seed)
np.random.seed(seed)
torch.manual_seed(seed)
# if args.gpu:
torch.cuda.manual_seed_all(seed)
mean_std = ([0.485, 0.456, 0.406], [0.229, 0.224, 0.225])
# train_transforms = transforms.Compose([
# transforms.RandomCrop(args['crop_size']),
# transforms.RandomRotation(90),
# transforms.RandomHorizontalFlip(p=0.5),
# transforms.RandomVerticalFlip(p=0.5),
# ])
short_size = int(min(args['input_size']) / 0.875)
# val_transforms = transforms.Compose([
# transforms.Scale(short_size, interpolation=Image.NEAREST),
# # joint_transforms.Scale(short_size),
# transforms.CenterCrop(args['input_size'])
# ])
train_joint_transform = joint_transforms.Compose([
# joint_transforms.Scale(short_size),
joint_transforms.RandomCrop(args['crop_size']),
joint_transforms.RandomHorizontallyFlip(),
joint_transforms.RandomRotate(90)
])
val_joint_transform = joint_transforms.Compose([
joint_transforms.Scale(short_size),
joint_transforms.CenterCrop(args['input_size'])
])
input_transform = transforms.Compose(
[transforms.ToTensor(),
transforms.Normalize(*mean_std)])
target_transform = extended_transforms.MaskToTensor()
restore_transform = transforms.Compose(
[extended_transforms.DeNormalize(*mean_std),
transforms.ToPILImage()])
visualize = transforms.ToTensor()
train_set = cityscapes.CityScapes('train',
joint_transform=train_joint_transform,
transform=input_transform,
target_transform=target_transform)
# train_set = cityscapes.CityScapes('train', transform=train_transforms)
train_loader = DataLoader(train_set,
batch_size=args['train_batch_size'],
num_workers=8,
shuffle=True)
val_set = cityscapes.CityScapes('val',
joint_transform=val_joint_transform,
transform=input_transform,
target_transform=target_transform)
# val_set = cityscapes.CityScapes('val', transform=val_transforms)
val_loader = DataLoader(val_set,
batch_size=args['val_batch_size'],
num_workers=8,
shuffle=True)
print(len(train_loader), len(val_loader))
# sdf
vgg_model = VGGNet(requires_grad=True, remove_fc=True)
net = FCN8s(pretrained_net=vgg_model,
n_class=cityscapes.num_classes,
dropout_rate=0.4)
# net.apply(init_weights)
criterion = nn.CrossEntropyLoss(ignore_index=cityscapes.ignore_label)
optimizer = optim.Adam(net.parameters(), lr=1e-4)
check_mkdir(ckpt_path)
check_mkdir(os.path.join(ckpt_path, exp_name))
open(
os.path.join(ckpt_path, exp_name,
str(datetime.datetime.now()) + '.txt'),
'w').write(str(args) + '\n\n')
scheduler = optim.lr_scheduler.ReduceLROnPlateau(
optimizer, 'min', patience=args['lr_patience'], min_lr=1e-10)
vgg_model = vgg_model.to(device)
net = net.to(device)
if torch.cuda.device_count() > 1:
net = nn.DataParallel(net)
if len(args['snapshot']) == 0:
curr_epoch = 1
args['best_record'] = {
'epoch': 0,
'val_loss': 1e10,
'acc': 0,
'acc_cls': 0,
'mean_iu': 0
}
else:
print('training resumes from ' + args['snapshot'])
net.load_state_dict(
torch.load(os.path.join(ckpt_path, exp_name, args['snapshot'])))
split_snapshot = args['snapshot'].split('_')
curr_epoch = int(split_snapshot[1]) + 1
args['best_record'] = {
'epoch': int(split_snapshot[1]),
'val_loss': float(split_snapshot[3]),
'acc': float(split_snapshot[5]),
'acc_cls': float(split_snapshot[7]),
'mean_iu': float(split_snapshot[9][:-4])
}
criterion.to(device)
for epoch in range(curr_epoch, args['epoch_num'] + 1):
train(train_loader, net, device, criterion, optimizer, epoch, args)
val_loss = validate(val_loader, net, device, criterion, optimizer,
epoch, args, restore_transform, visualize)
scheduler.step(val_loss)
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
num_filters = [16, 32]
batch_size = 32
lr = 1e-4
weight_decay = 1e-5
epochs = 600
# unet setting
num_conv_blocks = 1
# prob unet only
num_convs_per_block = num_conv_blocks
num_convs_fcomb = 1
partial_data = False
latent_dim = 6
beta = 10
# isotropic = False
# kaiming_normal and orthogonal
initializers = {'w': 'kaiming_normal', 'b': 'normal'}
# initializers = {'w':None, 'b':None}
# Transforms
joint_transfm = joint_transforms.Compose([joint_transforms.RandomHorizontallyFlip(),
joint_transforms.RandomSizedCrop(128),
joint_transforms.RandomRotate(60)])
# joint_transfm = None
input_transfm = transforms.Compose([transforms.ToPILImage()])
target_transfm = transforms.Compose([transforms.ToTensor()])
# joint_transfm=None
# input_transfm=None
# define data loader ===========================================================
mean_std = ([0.485, 0.456, 0.406], [0.229, 0.224, 0.225])
normal_mean_std = ([0.5, 0.5, 0.5], [0.25, 0.25, 0.25])
short_size = int(min(inp_size) / 0.875)
if stop_random_rotation:
train_joint_transform = joint_transforms.Compose([
joint_transforms.Scale(short_size),
joint_transforms.RandomHorizontallyFlip(),
joint_transforms.RandomCrop(inp_size)
])
else:
train_joint_transform = joint_transforms.Compose([
joint_transforms.Scale(short_size),
joint_transforms.RandomRotate(rot_angle),
joint_transforms.RandomCrop(inp_size)
])
val_joint_transform = joint_transforms.Compose(
[joint_transforms.FreeScale(inp_size)])
if stop_jitter:
train_input_transform = standard_transforms.Compose([
standard_transforms.ColorJitter(brightness=0.5,
contrast=0.5,
saturation=0.5,
hue=0.5),
standard_transforms.ToTensor(),
standard_transforms.Normalize(*mean_std)
])
def main():
net = PSPNet(19)
net.load_pretrained_model(
model_path='./Caffe-PSPNet/pspnet101_cityscapes.caffemodel')
for param in net.parameters():
param.requires_grad = False
net.cbr_final = conv2DBatchNormRelu(4096, 128, 3, 1, 1, False)
net.dropout = nn.Dropout2d(p=0.1, inplace=True)
net.classification = nn.Conv2d(128, kitti_binary.num_classes, 1, 1, 0)
# Find total parameters and trainable parameters
total_params = sum(p.numel() for p in net.parameters())
print(f'{total_params:,} total parameters.')
total_trainable_params = sum(p.numel() for p in net.parameters()
if p.requires_grad)
print(f'{total_trainable_params:,} training parameters.')
if len(args['snapshot']) == 0:
# net.load_state_dict(torch.load(os.path.join(ckpt_path, 'cityscapes (coarse)-psp_net', 'xx.pth')))
args['best_record'] = {
'epoch': 0,
'iter': 0,
'val_loss': 1e10,
'accu': 0
}
else:
print('training resumes from ' + args['snapshot'])
net.load_state_dict(
torch.load(os.path.join(ckpt_path, exp_name, args['snapshot'])))
split_snapshot = args['snapshot'].split('_')
curr_epoch = int(split_snapshot[1]) + 1
args['best_record'] = {
'epoch': int(split_snapshot[1]),
'iter': int(split_snapshot[3]),
'val_loss': float(split_snapshot[5]),
'accu': float(split_snapshot[7])
}
net.cuda(args['gpu']).train()
mean_std = ([103.939, 116.779, 123.68], [1.0, 1.0, 1.0])
train_joint_transform = joint_transforms.Compose([
joint_transforms.Scale(args['longer_size']),
joint_transforms.RandomRotate(10),
joint_transforms.RandomHorizontallyFlip()
])
train_input_transform = standard_transforms.Compose([
extended_transforms.FlipChannels(),
standard_transforms.ToTensor(),
standard_transforms.Lambda(lambda x: x.mul_(255)),
standard_transforms.Normalize(*mean_std)
])
val_input_transform = standard_transforms.Compose([
extended_transforms.FlipChannels(),
standard_transforms.ToTensor(),
standard_transforms.Lambda(lambda x: x.mul_(255)),
standard_transforms.Normalize(*mean_std)
])
target_transform = extended_transforms.MaskToTensor()
train_set = kitti_binary.KITTI(mode='train',
joint_transform=train_joint_transform,
transform=train_input_transform,
target_transform=target_transform)
train_loader = DataLoader(train_set,
batch_size=args['train_batch_size'],
num_workers=8,
shuffle=True)
val_set = kitti_binary.KITTI(mode='val',
transform=val_input_transform,
target_transform=target_transform)
val_loader = DataLoader(val_set,
batch_size=1,
num_workers=8,
shuffle=False)
criterion = nn.BCEWithLogitsLoss(pos_weight=torch.full([1], 1.05)).cuda(
args['gpu'])
optimizer = optim.SGD([{
'params': [
param
for name, param in net.named_parameters() if name[-4:] == 'bias'
],
'lr':
2 * args['lr']
}, {
'params': [
param
for name, param in net.named_parameters() if name[-4:] != 'bias'
],
'lr':
args['lr'],
'weight_decay':
args['weight_decay']
}],
momentum=args['momentum'],
nesterov=True)
if len(args['snapshot']) > 0:
optimizer.load_state_dict(
torch.load(
os.path.join(ckpt_path, exp_name, 'opt_' + args['snapshot'])))
optimizer.param_groups[0]['lr'] = 2 * args['lr']
optimizer.param_groups[1]['lr'] = args['lr']
check_mkdir(ckpt_path)
check_mkdir(os.path.join(ckpt_path, exp_name))
open(
os.path.join(ckpt_path, exp_name,
str(datetime.datetime.now()) + '.txt'),
'w').write(str(args) + '\n\n')
train(train_loader, net, criterion, optimizer, args, val_loader)
