def break_link(self, evalnode, args):
args_hash = ','.join([x.str_hash for x in args])
if args_hash not in self.links:
raise RException("Something went wrong breaking links in mem")
if evalnode not in self.links[args_hash]:
raise RException("Something went wrong breaking links in mem, 2")
del self.links[args_hash][evalnode]
evalnode.out_link = None
def sample(self, args=None):
if len(args) != 1:
raise RException("Mem takes exactly one argument")
procedure = args[0]
if procedure.type != 'procedure' and procedure.type != 'xrp':
raise RException("Can only mem procedures")
mem_proc = mem_proc_XRP(procedure, self.engine_type)
return XRPValue(mem_proc)
def incorporate(self, val, args=None):
args_hash = ','.join([x.str_hash for x in args])
if not args_hash in self.ids:
raise RException(
"Engine bug in mem. Did not sample before incorporating?")
# TODO get actual node, and evaluate (without reflip)
cur_val = self.engine.report_value(self.ids[args_hash])
if not (val.__eq__(cur_val)).bool:
raise RException("Engine bug in mem. Incongruous values")
self.count[args_hash] = self.count[args_hash] + 1
def follow_prior(names, niter=1000, burnin=100, timer=True, printiters=0):
rerun()
dict = {}
evalnodes = {}
infer(burnin)
for name in names:
if name in ['TIME']:
raise RException("shouldn't have a variable called TIME")
dict[name] = []
(val, id) = predict(var(name))
evalnodes[name] = directives.engine.predicts[id]
if timer:
dict['TIME'] = []
for n in range(niter):
if printiters > 0 and n % printiters == 0:
print n, "iters"
t = time.time()
infer()
for name in names:
val = evalnodes[name].val
if val.type != 'procedure' and val.type != 'xrp':
dict[name].append(val)
t = time.time() - t
if timer:
dict['TIME'].append(t)
for name in names:
if len(dict[name]) == 0:
del dict[name]
return dict
def get_lookups(self, name, evalnode):
if self.assumes[name] is not evalnode:
raise RException("Wrong evalnode getting lookups for %s" % name)
if name in self.lookups:
return self.lookups[name]
else:
return {}
def evaluate(self, xrp_force_val=None, restore=False):
expr = self.expression
env = self.env
old_active_children = self.active_children
self.active_children = {}
if self.observed:
xrp_force_val = self.observe_val
for (xrp, val, args) in self.xrp_applies:
self.remove_xrp(xrp, val, args)
self.xrp_applies = []
# TODO: use directive ids...
val = self.evaluate_recurse(expr, env, 0, 0, xrp_force_val, restore)
if not self.random_xrp_apply:
if xrp_force_val is not None:
raise RException("Can only force re-scoring XRP applications")
assert self.assume or self.predict
self.set_val(val)
self.active = True
for addition in old_active_children:
if addition not in self.active_children:
evalnode = self.children[addition]
evalnode.unevaluate()
return val
def __init__(self, op, children):
self.initialize()
self.type = 'apply'
self.op = op
self.children = children
if self.op.type == 'function' and len(self.op.vars) < len(self.children):
raise RException('Applying function to too many arguments!')
def randbelow(self, max = 0):
r = self.random()
if max == 0:
max = r_uint(9007199254740992)
elif max < 0:
raise RException("Randbelow got a negative argument")
return int(r * max)
def sample_prior(names, niter=1000, timer=True, printiters=0):
dict = {}
for name in names:
if name in ['TIME']:
raise RException("shouldn't have a variable called TIME")
dict[name] = []
if timer:
dict['TIME'] = []
for n in range(niter):
if printiters > 0 and n % printiters == 0:
print n, "iters"
t = time.time()
rerun()
for name in names:
(val, id) = predict(var(name))
if val.type != 'procedure' and val.type != 'xrp':
dict[name].append(val)
t = time.time() - t
if timer:
dict['TIME'].append(t)
for name in names:
if len(dict[name]) == 0:
del dict[name]
return dict
def get(self, stack):
stack = tuple(stack)
if stack in self.db:
return self.db[stack]
elif stack in self.db_noise:
return self.db_noise[stack]
else:
raise RException('Failed to get stack %s' % str(stack))
def test_prior(niter=1000, burnin=100, countup=True, timer=True):
expressions = []
varnames = []
# TODO : get all the observed variables
if directives.engine_type == 'reduced traces':
for id in directives.engine.assumes:
evalnode = directives.engine.assumes[id]
expressions.append(evalnode.expression)
varnames.append(evalnode.assume_name)
elif directives.engine_type == 'traces':
for id in directives.engine.assumes:
evalnode = directives.engine.assumes[id]
if evalnode.assume_name in ['TIME']:
raise RException("shouldn't have an assume_name called TIME")
expressions.append(evalnode.expression)
varnames.append(evalnode.assume_name)
else:
for (varname, expr) in directives.engine.assumes:
if varname in ['TIME']:
raise RException("shouldn't have a varname called TIME")
expressions.append(expr)
varnames.append(varname)
d2 = follow_prior(varnames, niter, burnin, timer)
d1 = sample_prior(varnames, niter, timer)
for i in range(len(varnames)):
name = varnames[i]
if name in d1:
if name not in d2:
raise RException(
"sample_prior has varname that follow_prior doesn't: %s" %
name)
if countup:
d1[name] = count_up(d1[name])
d2[name] = count_up(d2[name])
else:
if name in d2:
raise RException(
"follow_prior has varname that sample_prior doesn't: %s" %
name)
if countup and timer:
d1['TIME'] = count_up(d1['TIME'])
d2['TIME'] = count_up(d2['TIME'])
return (d1, d2)
def propagate_link(self, evalnode, val, restore_inactive):
if self.assumes[evalnode.assume_name] is not evalnode:
raise RException("Wrong evalnode getting lookups for %s" %
evalnode.assume_name)
evalnode.val = val
lookup_nodes = list_nodes(
self.get_lookups(evalnode.assume_name, evalnode))
for new_evalnode in lookup_nodes:
evalnode.propagate_to(new_evalnode, restore_inactive)
def lookup(self, name):
if name in self.assignments:
return (self.assignments[name], self)
else:
if self.parent is None:
raise RException('Variable %s undefined')
# raise RException('Variable %s undefined in env:\n%s' % (name, self.__str__()))
else:
return self.parent.lookup(name)
def get_cdf(valuedict, start, end, bucketsize, normalizebool=True):
numbuckets = int(math.floor((end - start) / bucketsize))
density = get_pdf(valuedict, start, end, bucketsize, normalizebool)
cumulative = [0]
for i in range(numbuckets):
cumulative.append(cumulative[-1] + density[i])
if normalizebool:
if not 0.999 < cumulative[-1] < 1.001:
raise RException("Cumulative distribution should be 1, at the end")
return cumulative
def forget(self, id):
if self.directives[id] == 'observe':
if id not in self.observes:
raise RException("id %d was never observed" % id)
(expr, val, active) = self.observes[id]
if not active:
raise RException("observe %d was already forgotten" % id)
self.observes[id] = (expr, val, False)
elif self.directives[id] == 'predict':
if id not in self.predicts:
raise RException("id %d was never predicted" % id)
(expr, active) = self.predicts[id]
if not active:
raise RException("predict %d was already forgotten" % id)
self.predicts[id] = (expr, False)
else:
raise RException("Cannot forget assumes")
self.engine.forget(id)
return
def observe(self, expr, obs_val, id):
if expr.hashval in self.observes:
raise RException('Already observed %s' % str(expr))
self.observes[id] = (expr, obs_val)
# bit of a hack, here, to make it recognize same things as with noisy_expr
self.evaluate(expr,
self.env,
reflip=False,
stack=[id],
xrp_force_val=obs_val)
return expr.hashval
def randomKey(self):
if len(self.idToKey) == 0:
raise RException("No keys to get")
max = self.heap.max()
while True:
index = rrandom.random.randbelow(len(self.idToKey))
key = self.idToKey[index]
p = rrandom.random.random()
(value, weight) = self.dict[key]
if p * max < weight:
return key
def forget(self, id):
if id in self.observes:
d = self.observes
elif id in self.predicts:
d = self.predicts
else:
raise RException("Can only forget predicts and observes")
evalnode = d[id]
evalnode.unevaluate()
#del d[id]
return
def remove_xrp(self, evalnode):
xrp = evalnode.xrp
try:
self.old_to_new_q += math.log(xrp.weight(evalnode.args))
except:
pass # This fails when restoring/keeping, for example
if evalnode.hashval not in self.choices:
raise RException("Choices did not already have this evalnode")
else:
del self.choices[evalnode.hashval]
self.delete_from_db(evalnode.hashval)
def infer(self):
try:
hashval = self.randomKey()
except:
raise RException("Program has no randomness!")
old_p, old_to_new_q, new_p, new_to_old_q = self.reflip(hashval)
p = rrandom.random.random()
if new_p + new_to_old_q - old_p - old_to_new_q < math.log(p):
self.restore()
else:
self.keep()
self.add_accepted_proposal(hashval)
self.add_made_proposal(hashval)
def add_xrp(self, xrp, args, evalnode):
weight = xrp.weight(args)
evalnode.setargs(args)
try:
self.new_to_old_q += math.log(weight)
except:
pass # This is only necessary if we're reflipping
if self.weighted_db.__contains__(
evalnode.hashval) or self.db.__contains__(
evalnode.hashval) or (evalnode.hashval in self.choices):
raise RException("DB already had this evalnode")
self.choices[evalnode.hashval] = evalnode
self.add_to_db(evalnode.hashval, weight)
def report_directives(self, desired_directive_type=""):
directive_report = []
for id in range(len(self.directives)):
directive_type = self.directives[id]
if desired_directive_type in ["", directive_type]:
d = {}
if directive_type == 'assume':
(varname, expr) = self.assumes[id]
value = self.report_value(id)
elif directive_type == 'observe':
(expr, value, active) = self.observes[id]
elif directive_type == 'predict':
(expr, active) = self.predicts[id]
value = self.report_value(id)
else:
raise RException("Invalid directive %s" % directive_type)
directive = [
str(id), directive_type,
expr.__str__(),
value.__str__()
]
directive_report.append(directive)
#directive_report = []
#for id in range(len(self.directives)):
# directive_type = self.directives[id]
# if desired_directive_type in ["", directive_type]:
# d = {}
# d["directive-id"] = str(id)
# if directive_type == 'assume':
# (varname, expr) = self.assumes[id]
# d["directive-type"] = "DIRECTIVE-ASSUME"
# d["directive-expression"] = expr.__str__()
# d["name"] = varname
# d["value"] = self.report_value(id).__str__()
# directive_report.append(d)
# elif directive_type == 'observe':
# (expr, val, active) = self.observes[id]
# d["directive-type"] = "DIRECTIVE-OBSERVE"
# d["directive-expression"] = expr.__str__()
# #d["value"] = self.report_value(id).__str__()
# directive_report.append(d)
# elif directive_type == 'predict':
# (expr, active) = self.predicts[id]
# d["directive-type"] = "DIRECTIVE-PREDICT"
# d["directive-expression"] = expr.__str__()
# d["value"] = self.report_value(id).__str__()
# directive_report.append(d)
# else:
# raise RException("Invalid directive %s" % directive_type)
return directive_report
def delete(self, key):
if key not in self.index:
raise RException("Key not in heap")
i = self.index[key]
last = len(self.heap) - 1
if (i != last):
self.swap(i, last)
lastkey = self.heap.pop()
assert lastkey == key
assert self.index[key] == last
del self.index[key]
del self.values[key]
if (i != last):
i = self.heapify_up(i)
i = self.heapify_down(i)
def rerun(self):
# Class representing environments
self.reset_engine()
for id in range(len(self.directives)):
if self.directives[id] == 'assume':
(varname, expr) = self.assumes[id]
self.engine.assume(varname, expr, id)
elif self.directives[id] == 'observe':
(expr, val, active) = self.observes[id]
if active:
self.engine.observe(expr, val, id)
elif self.directives[id] == 'predict':
(expr, active) = self.predicts[id]
if active:
self.engine.predict(expr, id)
else:
raise RException("Invalid directive")
def __init__(self, procedure, engine_type="traces"):
self.initialize()
self.resample = True
if engine_type == "traces":
self.engine = Traces()
elif engine_type == "reduced traces":
self.engine = ReducedTraces()
else:
raise RException("Engine type not implemented")
self.engine.assume('f', ConstExpression(procedure), 0)
self.procedure = procedure
self.n = len(procedure.vars)
self.argsdict = {}
self.hash = rrandom.random.randbelow()
self.ids = {} # args_hash -> directive id
self.count = {} # args_hash -> number of applications with these args
self.links = {} # args_hash -> set of evalnodes
self.id = 0
def entry_point(argv):
engine_type = 't'
if engine_type in [
'rt', 'reduced', 'reduced_trace', 'reduced_traces', 'reducedtrace',
'reducedtraces'
]:
engine = ReducedTraces()
elif engine_type in ['t', 'trace', 'traces']:
engine = Traces()
#elif engine_type in ['r', 'db', 'randomdb']:
# engine = RandomDB()
else:
raise RException("Engine %s is not implemented" % engine_type)
directives = Directives(engine)
run(directives)
return 0
def reflip(self, hashval):
if self.debug:
print self
if hashval in self.choices:
self.application_reflip = True
self.reflip_node = self.choices[hashval]
if not self.reflip_node.random_xrp_apply:
raise RException(
"Reflipping something which isn't a random xrp application"
)
if self.reflip_node.val is None:
raise RException(
"Reflipping something which previously had value None")
else:
self.application_reflip = False # internal reflip
(self.reflip_xrp, nodes) = self.xrps[hashval]
self.nodes = list_nodes(nodes)
self.eval_p = 0
self.uneval_p = 0
old_p = self.p
self.old_to_new_q = -math.log(self.weight())
if self.application_reflip:
self.old_val = self.reflip_node.val
self.new_val = self.reflip_node.reflip()
else:
# TODO: this is copied from traces. is it correct?
args_list = []
self.old_vals = []
for node in self.nodes:
args_list.append(node.args)
self.old_vals.append(node.val)
self.old_to_new_q += math.log(self.reflip_xrp.state_weight())
old_p += self.reflip_xrp.theta_prob()
self.new_vals, q_forwards, q_back = self.reflip_xrp.theta_mh_prop(
args_list, self.old_vals)
self.old_to_new_q += q_forwards
self.new_to_old_q += q_back
for i in range(len(self.nodes)):
node = self.nodes[i]
val = self.new_vals[i]
node.set_val(val)
node.propagate_up(False)
new_p = self.p
self.new_to_old_q = -math.log(self.weight())
self.old_to_new_q += self.eval_p
self.new_to_old_q += self.uneval_p
if not self.application_reflip:
new_p += self.reflip_xrp.theta_prob()
self.new_to_old_q += math.log(self.reflip_xrp.state_weight())
if self.debug:
if self.application_reflip:
print "\nCHANGING VAL OF ", self.reflip_node, "\n FROM : ", self.old_val, "\n TO : ", self.new_val, "\n"
if (self.old_val.__eq__(self.new_val)).bool:
print "SAME VAL"
else:
print "TRANSITIONING STATE OF ", self.reflip_xrp
print "new db", self
print "\nq(old -> new) : ", math.exp(self.old_to_new_q)
print "q(new -> old) : ", math.exp(self.new_to_old_q)
print "p(old) : ", math.exp(old_p)
print "p(new) : ", math.exp(new_p)
print 'transition prob : ', math.exp(new_p + self.new_to_old_q -
old_p -
self.old_to_new_q), "\n"
print "\n-----------------------------------------\n"
return old_p, self.old_to_new_q, new_p, self.new_to_old_q
def report_value(self, id):
node = self.get_directive_node(id)
if not node.active:
raise RException("Error. Perhaps this directive was forgotten?")
val = node.val
return val
def evaluate_recurse(self,
expr,
env,
hashval,
addition,
xrp_force_val=None,
restore=False):
hashval = rhash.hash_pair(hashval, addition)
if expr.type == 'value':
val = expr.val
elif expr.type == 'variable':
(val, lookup_env) = env.lookup(expr.name)
self.addlookup(expr.name, lookup_env)
# TODO: get rid of. Works with proper if, but not in traces
elif expr.type == 'if':
cond = self.evaluate_recurse(expr.cond, env, hashval, 1, None,
restore)
if cond.bool:
val = self.evaluate_recurse(expr.true, env, hashval, 2, None,
restore)
else:
val = self.evaluate_recurse(expr.false, env, hashval, 3, None,
restore)
elif expr.type == 'let':
# TODO: this really is a let*
# Does environment stuff work properly?
n = len(expr.vars)
assert len(expr.expressions) == n
values = []
new_env = env
for i in range(n): # Bind variables
new_env = new_env.spawn_child()
val = self.evaluate_recurse(expr.expressions[i], new_env,
hashval, i + 2, None, restore)
values.append(val)
new_env.set(expr.vars[i], values[i])
if val.type == 'procedure':
val.env = new_env
val = self.evaluate_recurse(expr.body, new_env, hashval, 1, None,
restore)
elif expr.type == 'apply':
n = len(expr.children)
op = self.evaluate_recurse(expr.op, env, hashval, 1, None, restore)
args = [
self.evaluate_recurse(expr.children[i], env, hashval, i + 2,
None, restore) for i in range(n)
]
if op.type == 'procedure':
if hashval == 0:
self.args = args
if n != len(op.vars):
raise RException(
'Procedure should have %d arguments. \nVars were \n%s\n, but had %d children.'
% (n, op.vars, len(expr.children)))
new_env = op.env.spawn_child()
for i in range(n):
new_env.set(op.vars[i], args[i])
addition = rhash.hash_many([x.__hash__() for x in args])
val = self.evaluate_recurse(op.body, new_env, hashval,
addition, None, restore)
elif op.type == 'xrp':
xrp = op.xrp
if not xrp.resample:
if hashval == 0:
self.random_xrp_apply = True
val = self.apply_random_xrp(xrp, args, xrp_force_val)
else:
child = self.get_child(hashval, env, expr, restore)
val = child.val
else:
val = xrp.sample(args)
self.add_xrp(xrp, val, args)
self.xrp_applies.append((xrp, val, args))
assert val is not None
else:
raise RException(
'Must apply either a procedure or xrp. Instead got expression %s'
% str(op))
elif expr.type == 'function':
n = len(expr.vars)
new_env = env.spawn_child()
val = Procedure(expr.vars, expr.body, env)
else:
raise RException('Invalid expression type %s' % expr.type)
return val
def add_assume(self, name, evalnode):
if name in self.assumes:
raise RException("Already assumed something with this name")
self.assumes[name] = evalnode
