def setUp(self):
config = read_py_config('./configs/config.py')
self.config = config
self.model = build_model(config,
device='cpu',
strict=True,
mode='convert')
self.img_size = tuple(map(int, config.resize.values()))
def synthesize(text):
input = text + "|00-" + lang + "|" + lang
# Change to Multi_TTS path
sys.path.append(
os.path.join(os.path.dirname(__file__),
"dependencies/Multilingual_Text_to_Speech"))
if "utils" in sys.modules: del sys.modules["utils"]
from synthesize import synthesize
from utils import build_model
# Load Mulilingual pretrained model
model = build_model(
os.path.abspath("./dependencies/checkpoints/generated_switching.pyt"))
model.eval()
# generate spectogram
spectogram = synthesize(model, "|" + input)
# Change to WaveRNN Path
sys.path.append(
os.path.join(os.path.dirname(__file__), "dependencies/WaveRNN"))
if "utils" in sys.modules: del sys.modules["utils"]
from models.fatchord_version import WaveRNN
from utils import hparams as hp
from gen_wavernn import generate
import torch
# Load WaveRNN pretrained model
hp.configure("hparams.py")
model = WaveRNN(
rnn_dims=hp.voc_rnn_dims,
fc_dims=hp.voc_fc_dims,
bits=hp.bits,
pad=hp.voc_pad,
upsample_factors=hp.voc_upsample_factors,
feat_dims=hp.num_mels,
compute_dims=hp.voc_compute_dims,
res_out_dims=hp.voc_res_out_dims,
res_blocks=hp.voc_res_blocks,
hop_length=hp.hop_length,
sample_rate=hp.sample_rate,
mode=hp.voc_mode).to(
torch.device('cuda' if torch.cuda.is_available() else 'cpu'))
model.load(
os.path.join(os.path.dirname(__file__),
"dependencies/checkpoints/wavernn_weight.pyt"))
waveform = generate(model, s, hp.voc_gen_batched, hp.voc_target,
hp.voc_overlap)
f = write("./temp/result.wav", "x")
f.write(waveform)
f.close()
def classify(**args):
"""
Main method that prepares dataset, builds model, executes training and displays results.
:param args: keyword arguments passed from cli parser
"""
# only allow print-outs if execution has no repetitions
allow_print = args['repetitions'] == 1
# determine classification targets and parameters to construct datasets properly
cls_target, cls_str = set_classification_targets(args['cls_choice'])
d = prepare_dataset(args['dataset_choice'], cls_target, args['batch_size'])
print('\n\tTask: Classify «{}» using «{}»\n'.format(
cls_str, d['data_str']))
print_dataset_info(d)
# build and train
inputs = Input(shape=(7810, ))
models = [
build_model(i, d['num_classes'], inputs=inputs)
for i in range(args['num_models'])
]
# combine outputs of all models
y = Average()([m.outputs[0] for m in models])
model = Model(inputs, outputs=y, name='multiple')
model.compile(optimizer='adam',
loss='categorical_crossentropy',
metrics=['accuracy'])
if allow_print:
model.summary()
print('')
plot_model(model, to_file='img/multiple_mlp.png')
model.fit(d['train_data'],
steps_per_epoch=d['train_steps'],
epochs=args['epochs'],
verbose=1,
class_weight=d['class_weights'])
# evaluation model
print('Evaluate ...')
model.compile(optimizer='adam',
loss='categorical_crossentropy',
metrics=['accuracy'])
model.evaluate(d['eval_data'], steps=d['test_steps'], verbose=1)
# predict on testset and calculate classification report and confusion matrix for diagnosis
print('Test ...')
pred = model.predict(d['test_data'], steps=d['test_steps'])
if allow_print:
diagnose_output(d['test_labels'], pred.argmax(axis=1),
d['classes_trans'])
return balanced_accuracy_score(d['test_labels'], pred.argmax(axis=1))
def main():
if not os.path.exists(train_label_path):
print('loading training labels...')
train_label_file = "data/dev_label.txt" if args.task == 1 else "data/train_label.txt"
train_label = read_label_from_file(train_label_file,
frame_size=frame_size,
frame_shift=frame_shift)
save_json(train_label, train_label_path)
else:
print('lazy loading training labels...')
train_label = read_json(train_label_path)
features_train, target_train = sklearn_dataset(
train_label,
task=args.task,
mode='train',
frame_size=frame_size,
frame_shift=frame_shift,
features_path=train_features_path,
target_path=train_target_path)
'''optional'''
# from sklearn.manifold import TSNE
# import matplotlib
# matplotlib.use('Agg')
# import matplotlib.pyplot as plt
# X_embedded = TSNE(n_components=2).fit_transform(features_train[0::500,:])
# plt.scatter(X_embedded[:,0], X_embedded[:,1],c=target_train[0::500])
# plt.savefig('vis.png')
'''optional'''
if args.task == 2:
if not os.path.exists(val_label_path):
print('loading validation labels...')
val_label_file = "data/dev_label.txt"
val_label = read_label_from_file(val_label_file,
frame_size=frame_size,
frame_shift=frame_shift)
save_json(val_label, val_label_path)
else:
print('lazy loading validation labels...')
val_label = read_json(val_label_path)
features_val, target_val = sklearn_dataset(
val_label,
task=args.task,
mode='val',
frame_size=frame_size,
frame_shift=frame_shift,
features_path=val_features_path,
target_path=val_target_path)
else:
features_val, target_val = None, None
m = build_model(args)
exp(m, features_train, target_train, features_val, target_val, exp_id)
def main():
# parsing arguments
parser = argparse.ArgumentParser(description='antispoofing training')
parser.add_argument('--draw_graph', default=False, type=bool, required=False,
help='whether or not to draw graphics')
parser.add_argument('--GPU', default=0, type=int, required=False,
help='specify which GPU to use')
parser.add_argument('--config', type=str, default=None, required=True,
help='path to configuration file')
parser.add_argument('--device', type=str, default='cuda',
help='if you want to eval model on cpu, pass "cpu" param')
args = parser.parse_args()
# reading config and manage device
path_to_config = args.config
config = read_py_config(path_to_config)
device = args.device + f':{args.GPU}' if args.device == 'cuda' else 'cpu'
# building model
model = build_model(config, device, strict=True, mode='eval')
model.to(device)
if config.data_parallel.use_parallel:
model = nn.DataParallel(model, **config.data_parallel.parallel_params)
# load snapshot
path_to_experiment = os.path.join(config.checkpoint.experiment_path, config.checkpoint.snapshot_name)
epoch_of_checkpoint = load_checkpoint(path_to_experiment, model, map_location=device, optimizer=None)
# preprocessing, making dataset and loader
normalize = A.Normalize(**config.img_norm_cfg)
test_transform = A.Compose([
A.Resize(**config.resize, interpolation=cv.INTER_CUBIC),
normalize
])
test_transform = Transform(val=test_transform)
test_dataset = make_dataset(config, val_transform=test_transform, mode='eval')
test_loader = DataLoader(dataset=test_dataset, batch_size=100, shuffle=True, num_workers=2)
# computing metrics
auc_, eer, accur, apcer, bpcer, acer, fpr, tpr = evaluate(model, test_loader,
config, device,
compute_accuracy=True)
print((f'eer = {round(eer*100,2)}\n'
+ f'accuracy on test data = {round(np.mean(accur),3)}\n'
+ f'auc = {round(auc_,3)}\n'
+ f'apcer = {round(apcer*100,2)}\n'
+ f'bpcer = {round(bpcer*100,2)}\n'
+ f'acer = {round(acer*100,2)}\n'
+ f'checkpoint made on {epoch_of_checkpoint} epoch'))
# draw graphics if needed
if args.draw_graph:
fnr = 1 - tpr
plot_roc_curve(fpr, tpr, config)
det_curve(fpr, fnr, eer, config)
def forecast_plot(tickername, steps):
data = fetch_data(tickername).reset_index()
data['Type'] = "HISTORICAL"
model = build_model(tickername)
fcast = model.forecast(int(steps))
new_series = pd.date_range(data['Date'].iloc[-1], periods=int(steps))
fcast_df = pd.DataFrame({'Date': new_series,
'Close': fcast[0],
'Type': "FORECAST"})
final_df = pd.concat([data[['Date', 'Close', 'Type']], fcast_df])
fig = px.line(final_df, x='Date', y='Close', color='Type')
return fig.to_html()
def main():
set_random_seed(C.seed)
summary_writer = SummaryWriter(C.log_dpath)
train_iter, val_iter, test_iter, vocab = build_loaders(C)
model = build_model(C, vocab)
print("#params: ", count_parameters(model))
model = model.cuda()
optimizer = torch.optim.Adamax(model.parameters(),
lr=C.lr,
weight_decay=1e-5)
lr_scheduler = torch.optim.lr_scheduler.CosineAnnealingLR(optimizer,
C.epochs,
eta_min=0,
last_epoch=-1)
best_val_scores = {'CIDEr': -1.}
for e in range(1, C.epochs + 1):
print()
ckpt_fpath = C.ckpt_fpath_tpl.format(e)
""" Train """
teacher_forcing_ratio = get_teacher_forcing_ratio(
C.decoder.max_teacher_forcing_ratio,
C.decoder.min_teacher_forcing_ratio, e, C.epochs)
train_loss = train(e, model, optimizer, train_iter, vocab,
teacher_forcing_ratio, C.CA_lambda, C.gradient_clip)
log_train(C, summary_writer, e, train_loss, get_lr(optimizer),
teacher_forcing_ratio)
lr_scheduler.step()
""" Validation """
val_loss = evaluate(model, val_iter, vocab, C.CA_lambda)
val_scores, _, _, _ = score(model, val_iter, vocab)
log_val(C, summary_writer, e, val_loss, val_scores)
if val_scores['CIDEr'] > best_val_scores['CIDEr']:
best_val_scores = val_scores
best_epoch = e
best_model = model
print("Saving checkpoint at epoch={} to {}".format(e, ckpt_fpath))
save_checkpoint(ckpt_fpath, e, model, optimizer)
""" Test """
test_scores, _, _, _ = score(best_model, test_iter, vocab)
for metric in C.metrics:
summary_writer.add_scalar("BEST SCORE/{}".format(metric),
test_scores[metric], best_epoch)
best_ckpt_fpath = C.ckpt_fpath_tpl.format("best")
save_checkpoint(best_ckpt_fpath, best_epoch, best_model, optimizer)
def classify(**args):
"""
Main method that prepares dataset, builds model, executes training and displays results.
:param args: keyword arguments passed from cli parser
"""
# only allow print-outs if execution has no repetitions
allow_print = args['repetitions'] == 1
# determine classification targets and parameters to construct datasets properly
cls_target, cls_str = set_classification_targets(args['cls_choice'])
d = prepare_dataset(args['dataset_choice'], cls_target, args['batch_size'],
args['norm_choice'])
print('\n\tTask: Classify «{}» using «{}»\n'.format(
cls_str, d['data_str']))
print_dataset_info(d)
model = build_model(0,
d['num_classes'],
name='baseline_mlp',
new_input=True)
model.compile(optimizer='adam',
loss='categorical_crossentropy',
metrics=['accuracy'])
if allow_print:
model.summary()
print('')
# callback to log data for TensorBoard
# tb_callback = TensorBoard(log_dir='./results', histogram_freq=0, write_graph=True, write_images=True)
# train and evaluate
model.fit(
d['train_data'],
steps_per_epoch=d['train_steps'],
epochs=args['epochs'],
# callbacks=[tb_callback],
verbose=1,
class_weight=d['class_weights'])
model.evaluate(d['eval_data'], steps=d['test_steps'], verbose=1)
# predict on testset and calculate classification report and confusion matrix for diagnosis
pred = model.predict(d['test_data'], steps=d['test_steps'])
if allow_print:
diagnose_output(d['test_labels'], pred.argmax(axis=1),
d['classes_trans'])
return balanced_accuracy_score(d['test_labels'], pred.argmax(axis=1))
def main():
"""Prepares data for the antispoofing recognition demo"""
parser = argparse.ArgumentParser(description='antispoofing recognition live demo script')
parser.add_argument('--video', type=str, default=None, help='Input video')
parser.add_argument('--cam_id', type=int, default=-1, help='Input cam')
parser.add_argument('--config', type=str, default=None, required=False,
help='Configuration file')
parser.add_argument('--fd_model', type=str, required=True)
parser.add_argument('--fd_thresh', type=float, default=0.6, help='Threshold for FD')
parser.add_argument('--spoof_thresh', type=float, default=0.4,
help='Threshold for predicting spoof/real. The lower the more model oriented on spoofs')
parser.add_argument('--spf_model', type=str, default=None,
help='path to .pth checkpoint of model or .xml IR OpenVINO model', required=True)
parser.add_argument('--device', type=str, default='CPU')
parser.add_argument('--GPU', type=int, default=0, help='specify which GPU to use')
parser.add_argument('-l', '--cpu_extension',
help='MKLDNN (CPU)-targeted custom layers.Absolute path to a shared library with the kernels '
'impl.', type=str, default=None)
parser.add_argument('--write_video', type=bool, default=False,
help='if you set this arg to True, the video of the demo will be recoreded')
args = parser.parse_args()
device = args.device + f':{args.GPU}' if args.device == 'cuda' else 'cpu'
write_video = args.write_video
if args.cam_id >= 0:
log.info('Reading from cam {}'.format(args.cam_id))
cap = cv.VideoCapture(args.cam_id)
cap.set(cv.CAP_PROP_FRAME_WIDTH, 1280)
cap.set(cv.CAP_PROP_FRAME_HEIGHT, 720)
cap.set(cv.CAP_PROP_FOURCC, cv.VideoWriter_fourcc(*'MJPG'))
else:
assert args.video
log.info('Reading from {}'.format(args.video))
cap = cv.VideoCapture(args.video)
cap.set(cv.CAP_PROP_FOURCC, cv.VideoWriter_fourcc(*'MJPG'))
assert cap.isOpened()
face_detector = FaceDetector(args.fd_model, args.fd_thresh, args.device, args.cpu_extension)
if args.spf_model.endswith('pth.tar'):
if not args.config:
raise ValueError('You should pass config file to work with a Pytorch model')
config = utils.read_py_config(args.config)
spoof_model = utils.build_model(config, args, strict=True, mode='eval')
spoof_model = TorchCNN(spoof_model, args.spf_model, config, device=device)
else:
assert args.spf_model.endswith('.xml')
spoof_model = VectorCNN(args.spf_model)
# running demo
run(args, cap, face_detector, spoof_model, write_video)
def train_process(config):
start = time.time()
# 准备训练资料
train_dataset = EN2CNDataset(config.data_path, config.max_output_len,
'training')
train_loader = data.DataLoader(train_dataset,
batch_size=config.batch_size,
shuffle=True)
train_iter = infinit_iter(train_loader)
# 准备检验资料
val_dataset = EN2CNDataset(config.data_path, config.max_output_len,
'validation')
val_loader = data.DataLoader(val_dataset, batch_size=1)
# 构建模型
model, optimizer = build_model(config, train_dataset.en_vocab_size,
train_dataset.cn_vocab_size)
loss_function = nn.CrossEntropyLoss(
ignore_index=0) # ？？？ 是 ignore bias 的 grad 吗
# 训练过程
train_loss, val_losses, bleu_scores = [], [], []
total_steps = 0
while total_steps < config.num_steps:
# 训练模型
model, optimizer, losses = train(model, optimizer, train_iter,
loss_function, total_steps,
config.summary_steps)
train_loss += losses
# 检验模型
val_loss, bleu_score, result = test(model, val_loader, loss_function)
val_losses.append(val_loss)
bleu_scores.append(bleu_score)
total_steps += config.summary_steps
print(
'\r',
'val [{}] loss {:.3f}, Perplexity: {:.3f}, bleu score: {:.3f}, used {} seconds '
.format(total_steps, val_loss, np.exp(val_loss), bleu_score,
int(time.time() - start)))
# 储存模型和结果
if total_steps % config.store_steps == 0 or total_steps >= config.num_steps:
save_model(model, config.store_model_path, total_steps)
with open(f'{config.store_model_path}/output_{total_steps}.txt',
'w') as f:
for l in result:
print(l, file=f)
return train_loss, val_losses, bleu_scores
def forecast_plot(tickername, steps):
data = fetch_data(tickername).reset_index()
data['Type'] = 'HISTORICAL'
model = build_model(tickername)
fcast = model.forecast(int(steps))
new_series = pd.date_range(data['Date'].iloc[-1], periods=int(steps))
fcast_df = pd.DataFrame({
'Date': new_series,
'Close': fcast[0],
'Type': 'FORECAST'
})
final_df = pd.concat([data[['Date', 'Close', 'Type']], fcast_df])
fig = px.line(final_df, x='Date', y='Close', color='Type')
# fig = go.Figure([go.Scatter(x=data['Date'], y=data['Close'])])
# fig.add_trace(go.Scatter(x=fcast['Date'], y=fcast[0]))
return fig.to_html()
def main():
"""Main workflow"""
args = utils.build_args(argparse.ArgumentParser())
utils.init_logger(args.model_file)
assert torch.cuda.is_available()
torch.cuda.set_device(args.gpuid)
utils.init_random(args.seed)
utils.set_params(args)
logger.info("Config:\n%s", pformat(vars(args)))
fields = utils.build_fields()
logger.info("Fields: %s", fields.keys())
logger.info("Load %s", args.train_file)
train_data = LMDataset(fields, args.train_file, args.sent_length_trunc)
logger.info("Training sentences: %d", len(train_data))
logger.info("Load %s", args.valid_file)
val_data = LMDataset(fields, args.valid_file, args.sent_length_trunc)
logger.info("Validation sentences: %d", len(val_data))
fields["sent"].build_vocab(train_data)
train_iter = utils.build_dataset_iter(train_data, args)
val_iter = utils.build_dataset_iter(val_data, args, train=False)
if args.resume and os.path.isfile(args.checkpoint_file):
logger.info("Resume training")
logger.info("Load checkpoint %s", args.checkpoint_file)
checkpoint = torch.load(args.checkpoint_file,
map_location=lambda storage, loc: storage)
es_stats = checkpoint["es_stats"]
args = utils.set_args(args, checkpoint)
else:
checkpoint = None
es_stats = ESStatistics(args)
model = utils.build_model(fields, args, checkpoint)
logger.info("Model:\n%s", model)
optimizer = utils.build_optimizer(model, args, checkpoint)
try_train_val(fields, model, optimizer, train_iter, val_iter, es_stats,
args)
def __init__(self, train_loader, test_loader, real_loader, config):
self.train_loader = train_loader
self.test_loader = test_loader
self.real_loader = real_loader
self.z_dim = config.z_dim
self.c_dim = config.c_dim
self.image_size = config.image_size
self.g_conv_dim = config.g_conv_dim
self.d_conv_dim = config.d_conv_dim
self.g_repeat_num = config.g_repeat_num
self.d_repeat_num = config.d_repeat_num
self.lambda_gan = config.lambda_gan
self.batch_size = config.batch_size
self.num_epoch = config.num_epoch
self.lr_decay_start = config.lr_decay_start
self.g_lr = config.g_lr
self.d_lr = config.d_lr
self.n_critic = config.n_critic
self.resume_epoch = config.resume_epoch
# Miscellaneous.
self.use_tensorboard = config.use_tensorboard
self.device = torch.device(
'cuda' if torch.cuda.is_available() else 'cpu')
self.use_numpy_fid = config.use_numpy_fid
# Directories.
self.log_dir = config.log_dir
self.sample_dir = config.sample_dir
self.model_save_dir = config.model_save_dir
self.result_dir = config.result_dir
self.real_incep_stat_dir = config.real_incep_stat_dir
self.real_fid_stat_dir = config.real_fid_stat_dir
# Step size.
self.log_step = config.log_step
self.sample_step = config.sample_step
self.model_save_step = config.model_save_step
# Build the model and tensorboard.
self.KDLoss = CMPDisLoss()
self.G, self.D, self.g_optimizer, self.d_optimizer = utils.build_model(
config)
if self.use_tensorboard:
self.logger = utils.build_tensorboard(self.log_dir)
def classify(**args):
"""
Main method that prepares dataset, builds model, executes training and displays results.
:param args: keyword arguments passed from cli parser
"""
with open('config/datasets.yaml') as cnf:
dataset_configs = yaml.safe_load(cnf)
try:
repo_path = dataset_configs['repo_path']
except KeyError as e:
print(f'Missing dataset config key: {e}')
sys.exit(1)
batch_size = 64
repetitions = args['repetitions']
# determine classification targets and parameters to construct datasets properly
cls_target, cls_str = set_classification_targets(args['cls_choice'])
# list of 5% increments ranging from 0% to 100%
mixture_range = np.arange(0, 1.01, .05)
results = np.zeros((len(mixture_range), repetitions))
for i,cut in enumerate(mixture_range):
print(f'cut: {cut}')
d = prepare_mixture_dataset(
cls_target,
args['batch_size'],
mixture_pct=cut,
normalisation=args['norm_choice'])
# perform #repetitions per 5% dataset mixture
for j in range(repetitions):
model = build_model(0, d['num_classes'], name='baseline_mlp', new_input=True)
model.compile(optimizer='adam', loss='categorical_crossentropy', metrics=['accuracy'])
# train and evaluate
model.fit(
d['train_data'],
steps_per_epoch=d['train_steps'],
epochs=args['epochs'],
verbose=0,
class_weight=d['class_weights'])
results[i,j] = balanced_accuracy_score(d['test_labels'], model.predict(d['test_data'](), steps=d['test_steps']).argmax(axis=1))
print(results)
np.save(join(repo_path, 'data/synthetic_influence_target_{cls_target}', results))
def __init__(self, config, device, resume=False):
self.config = config
self.cfg_stg = config['strategy']
self.device = device
self.model = utils.build_model(config['model'])
self.model.to(device)
self.logger = utils.create_logger(self.cfg_stg['save_path'])
self.tb_logger = SummaryWriter(
join(self.cfg_stg['save_path'], 'events'))
self.start_epoch = 1
if resume:
self.load_model()
self.optimizer = utils.build_optimizer(config['strategy'], self.model,
self.start_epoch)
def main():
# Load checkpoint if we resume from a previous training.
if opt.train_from:
print('Loading checkpoint from %s' % opt.train_from)
checkpoint = torch.load(opt.train_from,
map_location=lambda storage, loc: storage)
model_opt = checkpoint['opt']
# I don't like reassigning attributes of opt: it's not clear.
opt.start_epoch = checkpoint['epoch'] + 1
elif opt.init_with:
print('Loading checkpoint from %s' % opt.init_with)
checkpoint = torch.load(opt.init_with,
map_location=lambda storage, loc: storage)
model_opt = opt
elif opt.eval_with:
print('Loading checkpoint from %s' % opt.eval_with)
checkpoint = torch.load(opt.eval_with,
map_location=lambda storage, loc: storage)
model_opt = checkpoint["opt"]
model_opt.eval_only = 1
else:
checkpoint = None
model_opt = opt
for k, v in vars(model_opt).items():
print("{}: {}".format(k, v))
first_dataset = next(lazily_load_dataset("train"))
data_type = first_dataset.data_type
fields = load_fields(first_dataset, data_type, checkpoint)
collect_report_features(fields)
model = build_model(model_opt, opt, fields, checkpoint)
tally_parameters(model)
check_save_model_path()
optim = build_optim(model, checkpoint)
train_model(model, fields, optim, data_type, model_opt)
if opt.tensorboard:
writer.close()
def classify(**args):
"""
Main method that prepares dataset, builds model, executes training and displays results.
:param args: keyword arguments passed from cli parser
"""
# only allow print-outs if execution has no repetitions
allow_print = args['repetitions'] == 1
# determine classification targets and parameters to construct datasets properly
cls_target, cls_str = set_classification_targets(args['cls_choice'])
d = prepare_dataset(
args['dataset_choice'],
cls_target,
args['batch_size'],
args['norm_choice'],
mp_heatmap=True)
print('\n\tTask: Classify «{}» using «{}»\n'.format(cls_str, d['data_str']))
print_dataset_info(d)
model = build_model(0, d['num_classes'], name='64shot_mlp', new_input=True)
model.compile(optimizer='adam', loss='categorical_crossentropy', metrics=['accuracy'])
if allow_print:
model.summary()
print('')
# train and evaluate
model.fit(
x=d['train_data'],
steps_per_epoch=d['train_steps'],
epochs=args['epochs'],
verbose=1,
class_weight=d['class_weights'])
model.evaluate(d['eval_data'], steps=d['test_steps'], verbose=1)
# predict on testset and calculate classification report and confusion matrix for diagnosis
pred = model.predict(d['test_data'], steps=d['test_steps'], verbose=1)
# instead of argmax, reduce list to only on-target predictions to see how accurate the model judged each shot
target_preds = [pred[i][l] for i,l in enumerate(d['test_labels'])]
pred = pred.argmax(axis=1)
compute_accuracy_heatmaps(d, target_preds, cls_target, args['epochs'])
return balanced_accuracy_score(d['test_labels'], pred)
def _construct_model_from_theta(self, theta):
# print('type of theta: {}'.format(type(theta)))
theta = nn.Parameter(theta)
target_net_new = utils.build_model(self.args)
# .state_dict() stores all the persistent buffers (e.g. running averages), which are not included in .parameters()
model_dict = self.target_net.state_dict()
params, offset = {}, 0
for k, v in self.target_net.named_parameters():
v_length = np.prod(v.size())
params[k] = theta[offset:offset + v_length].view(v.size())
# print('type of params[k]: {}'.format(type(params[k])))
offset += v_length
assert offset == len(theta)
model_dict.update(params)
target_net_new.load_state_dict(model_dict)
return target_net_new.cuda()
def test_process(config):
# 准备测试资料
test_dataset = EN2CNDataset(config.data_path, config.max_output_len,
'testing')
test_loader = data.DataLoader(test_dataset, batch_size=1)
# 建构模型
model, optimizer = build_model(config, test_dataset.en_vocab_size,
test_dataset.cn_vocab_size)
print('Finish build model')
loss_function = nn.CrossEntropyLoss(ignore_index=0)
model.eval()
# 测试模型
test_loss, bleu_score, result = test(model, test_loader, loss_function)
# 储存结果
with open(f'./test_output.txt', 'w') as f:
for line in result:
print(line, file=f)
return test_loss, bleu_score
def main(_):
if FLAGS.gpu == -1:
device = '/cpu:0'
else:
device = '/gpu:{}'.format(FLAGS.gpu)
with tf.device(device):
tf.random.set_seed(1234)
# Load the dataset and process features and adj matrix
print('Loading {} dataset...'.format(FLAGS.dataset))
adj, features, labels, idx_train, idx_val, idx_test = load_dataset(
FLAGS.dataset)
num_classes = max(labels) + 1
print('Build model...')
model = build_model(FLAGS.model, FLAGS.num_layers, FLAGS.hidden_dim,
num_classes, FLAGS.dropout_rate)
print('Start Training...')
train(model, adj, features, labels, idx_train, idx_val, idx_test)
def run(corpus, ckpt_fpath):
C.corpus = corpus
if corpus == 'MSVD':
C.loader = MSVDLoaderConfig
elif corpus == 'MSR-VTT':
C.loader = MSRVTTLoaderConfig
else:
raise NotImplementedError('Unknown corpus: {}'.format(corpus))
checkpoint = torch.load(ckpt_fpath)
train_iter, val_iter, test_iter, vocab = build_loaders(C)
model = build_model(C, vocab)
model.load_state_dict(torch.load(ckpt_fpath))
model.cuda()
model.eval()
scores, _, _, _ = score(model, test_iter, vocab)
print(scores)
def main():
"""Prepares data for the accuracy convertation checker"""
parser = argparse.ArgumentParser(description='antispoofing recognition live demo script')
parser.add_argument('--config', type=str, default=None, required=True,
help='Configuration file')
parser.add_argument('--spf_model_openvino', type=str, default=None,
help='path to .xml IR OpenVINO model', required=True)
parser.add_argument('--spf_model_torch', type=str, default=None,
help='path to .pth.tar checkpoint', required=True)
parser.add_argument('--device', type=str, default='CPU')
args = parser.parse_args()
config = utils.read_py_config(args.config)
assert args.spf_model_openvino.endswith('.xml') and args.spf_model_torch.endswith('.pth.tar')
spoof_model_torch = utils.build_model(config, args.device.lower(), strict=True, mode='eval')
spoof_model_torch = TorchCNN(spoof_model_torch, args.spf_model_torch, config, device=args.device.lower())
spoof_model_openvino = VectorCNN(args.spf_model_openvino)
# running checker
avg_diff = run(spoof_model_torch, spoof_model_openvino)
print((f'mean difference on the first predicted class : {avg_diff[0]}\n'
+ f'mean difference on the second predicted class : {avg_diff[1]}'))
def main(length=40, num_epochs=20):
'''
Build and train LSTM network to solve XOR problem
'''
X_train, y_train, X_test, y_test = generate_samples(length=length)
model = build_model()
history = model.fit(X_train,
y_train,
epochs=num_epochs,
batch_size=32,
validation_split=0.10,
shuffle=False)
# Evaluate model on test set
preds = model.predict(X_test)
preds = np.round(preds[:, 0]).astype('float32')
acc = (np.sum(preds == y_test) / len(y_test)) * 100
print('Accuracy: {:.2f}%'.format(acc))
# Plotting loss and accuracy
model_plot(history)
return
def main():
"""Runs the script."""
device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
print("Running on the: " + str(device))
args = get_parsed_arguments()
#Loading the data
imagedatasets, dataloader = utils.load_data(path=args.data_dir, pin_memory=args.pin_mem)
#Build the model
model = utils.build_model(arch=args.arch, dropout=args.dropout, con_check=args.con_check)
#Train model
print("Training Model...")
utils.train_model(model, dataloader["training"], dataloader["validation"], epoch=args.epoch, device=args.device)
#Save model
print("Saving Model")
utils.save_checkpoint(model = model, train_data = imagedatasets["training"], check_name=args.check_name)
print("Process Complete, you can now start predicting!")
def classify(**args):
"""
Main method that prepares dataset, builds model, executes training and displays results.
:param args: keyword arguments passed from cli parser
"""
batch_size = 64
# determine classification targets and parameters to construct datasets properly
cls_target, cls_str = set_classification_targets(args['cls_choice'])
d = prepare_dataset(args['dataset_choice'], cls_target, batch_size)
print('\n\tTask: Classify «{}» using «{}»\n'.format(
cls_str, d['data_str']))
print_dataset_info(d)
model = build_model(0,
d['num_classes'],
name='baseline_mlp',
new_input=True)
model.compile(optimizer='adam',
loss='categorical_crossentropy',
metrics=['accuracy'])
# train and evaluate
model.fit(d['train_data'],
steps_per_epoch=d['train_steps'],
epochs=args['epochs'],
verbose=1,
class_weight=d['class_weights'])
print('Evaluate ...')
model.evaluate(d['eval_data'], steps=d['test_steps'], verbose=1)
# predict on testset and calculate classification report and confusion matrix for diagnosis
print('Test ...')
pred = model.predict(d['test_data'], steps=d['test_steps'])
diagnose_output(d['test_labels'], pred.argmax(axis=1), d['classes_trans'])
def run_roberta(strategy: tf.distribute.TPUStrategy, x_train: np.array,
x_valid: np.array, _y_train: np.array, y_valid: np.array,
train_dataset: tf.data.Dataset, valid_dataset: tf.data.Dataset,
test_dataset: tf.data.Dataset, max_len: int, epochs: int,
batch_size: int) -> tf.keras.models.Model:
"""
create and run distilibert on training and testing data
"""
logger.info('build roberta')
with strategy.scope():
transformer_layer = TFAutoModel.from_pretrained(MODEL)
model = build_model(transformer_layer, max_len=max_len)
model.summary()
# run model train
n_steps = x_train.shape[0] // batch_size
history = model.fit(
train_dataset,
steps_per_epoch=n_steps,
validation_data=valid_dataset,
epochs=epochs
)
plot_train_val_loss(history, 'xlm_roberta')
n_steps = x_valid.shape[0] // batch_size
_train_history_2 = model.fit(
valid_dataset.repeat(),
steps_per_epoch=n_steps,
epochs=epochs
)
scores = model.predict(test_dataset, verbose=1)
logger.info(f"AUC: {roc_auc(scores, y_valid):.4f}")
return model
ch: i
for (i, ch) in enumerate(sorted(list(set(train_data + test_data))))
}
idx_to_char = {i: ch for (ch, i) in char_to_idx.items()}
vocab_size = len(char_to_idx)
with open('../data/github_test_chars', 'r') as f:
project_seed = pickle.load(f)
initial_seed = ''.join(project_seed)
initial_seed = initial_seed.replace('\x1b', '\x0a')
missingKeys = set(initial_seed) - set(char_to_idx)
print 'Working on %d characters (%d unique).' % (len(train_data + test_data),
vocab_size)
model = build_model(True, 1024, 1, 1, 3, vocab_size)
model.load_weights(path)
model.reset_states()
start_time = time.time()
for c in [char_to_idx[c] for c in initial_seed]:
batch = np.zeros((1, 1, vocab_size))
batch[0, 0, c] = 1
model.predict_on_batch(batch)
print("--- %s seconds ---" % (time.time() - start_time))
sampled = [char_to_idx[c] for c in seed]
for c in seed:
batch = np.zeros((1, 1, vocab_size))
batch[0, 0, char_to_idx[c]] = 1
def main():
args = active_args.get_arg_parser().parse_args()
# determine device
device = 'cuda' if torch.cuda.is_available() and args.cuda else 'cpu'
print("using device {} ...".format(device))
model_type = 'bilstm_crf' if args.train_bi_lstm else 'elmo_bilstm_crf'
model_type = 'dictionary' if args.train_dictionary else model_type
model_type = 'cached' if args.train_cached else model_type
model_type = 'phrase_dictionary' if args.train_phrase_dictionary else model_type
out = dataset_utils.load_dataset(args, force_load=True)
train_dataset, valid_dataset, train_vocab, output_categories = out
if args.binary_classifier:
b_class = args.binary_classifier
print('converting to a binary problem for class: {}'.format(b_class))
output_categories = BinaryVocab(output_categories,
select_class=b_class)
# phrase: 69 F1 Drug 791 examples
# phrase: 58 F1 ADR 791 examples
# word: 69 F1 Drug 791 examples
# word: 59 F1 ADR 791 examples
# build unlabeled corpus
unlabeled_corpus = conlldataloader.ConllDataSetUnlabeled(train_dataset)
model = utils.build_model(
model_type=model_type,
embedding_dim=args.embedding_dim,
hidden_dim=args.hidden_dim,
batch_size=args.batch_size,
vocab=train_vocab,
tag_vocab=output_categories,
).to(device)
if model_type == 'cached':
model.embedder.cache_dataset(unlabeled_corpus,
verbose=True,
device=device)
# created a simulated oracle with all the ground truth values
sim_oracle = oracle.SimulatedOracle(train_dataset)
# heuristic
if args.heuristic == constants.ACTIVE_LEARNING_RANDOM_H:
h = active_heuristic.Random(train_vocab, output_categories)
elif args.heuristic == constants.ACTIVE_LEARNING_UNCERTAINTY_H:
h = active_heuristic.Uncertantiy(train_vocab, output_categories)
elif args.heuristic == constants.ACTIVE_LEARNING_KNN:
h = active_heuristic.KNNEmbeddings(train_vocab, output_categories)
h.prepare(
model=model,
dataset=unlabeled_corpus,
device=device,
)
else:
raise Exception("Unknown heurisitc: {}".format(args.heuristic))
active_train(
log_dir=args.log_dir,
model=model,
model_path=args.model_path,
unlabeled_dataset=unlabeled_corpus,
test_dataset=valid_dataset,
# active learning parameters
iterations=args.iterations,
heuritic=h,
oracle=sim_oracle,
sample_size=args.sample_size,
sampling_strategy=args.sampling_strategy,
# train parameters
vocab=train_vocab,
tag_vocab=output_categories,
batch_size=args.batch_size,
shuffle=args.shuffle,
num_workers=args.num_workers,
num_epochs=args.num_epochs,
learning_rate=args.learning_rate,
weight_decay=args.weight_decay,
momentum=args.momentum,
optimizer_type=args.optimizer_type,
# Other parameters
device=device,
summary_file=args.summary_file,
)
def classify(**args):
"""
Main method that prepares dataset, builds model, executes training and displays results.
:param args: keyword arguments passed from cli parser
"""
# only allow print-outs if execution has no repetitions
allow_print = args['repetitions'] == 1
# determine classification targets and parameters to construct datasets properly
cls_target, cls_str = set_classification_targets(args['cls_choice'])
d = prepare_dataset(0, cls_target, args['batch_size'], args['norm_choice'])
print('\n\tTask: Classify «{}» using «{}»'.format(cls_str, d['data_str']))
print_dataset_info(d)
model = build_model(0,
d['num_classes'],
name='baseline_mlp',
new_input=True)
model.compile(optimizer='adam',
loss='categorical_crossentropy',
metrics=['accuracy'])
# train and evaluate - pre-transfer
model.fit(d['train_data'],
steps_per_epoch=d['train_steps'],
epochs=args['epochs'],
verbose=1,
class_weight=d['class_weights'])
print('Evaluate ...')
model.evaluate(d['eval_data'], steps=d['test_steps'], verbose=1)
del d
d = prepare_dataset(
1, # HH12
cls_target,
args['batch_size'],
args['norm_choice'])
print_dataset_info(d)
# make layers untrainable and remove classification layer, then train new last layer on handheld data
for l in model.layers[:-1]:
l.trainable = False
if allow_print:
plot_model(model, to_file='img/transfer_mlp_pre.png')
new_layer = Dense(d['num_classes'],
activation='softmax',
name='dense_transfer')(model.layers[-2].output)
model = Model(inputs=model.inputs,
outputs=new_layer,
name='transfer_model')
model.compile(optimizer='adam',
loss='categorical_crossentropy',
metrics=['accuracy'])
if allow_print:
model.summary()
print('')
plot_model(model, to_file='img/transfer_mlp_post.png')
# train and evaluate - post-transfer
model.fit(d['train_data'],
steps_per_epoch=d['train_steps'],
epochs=args['epochs'] * 2,
verbose=1,
class_weight=d['class_weights'])
print('Evaluate ...')
model.evaluate(d['eval_data'], steps=d['test_steps'], verbose=1)
# predict on testset and calculate classification report and confusion matrix for diagnosis
print('Test ...')
pred = model.predict(d['test_data'], steps=d['test_steps'])
diagnose_output(
d['test_labels'],
pred.argmax(axis=1),
d['classes_trans'],
show=False,
file_name=
f'heatmap_transfer_{datetime.now().hour}_{datetime.now().minute}')
return balanced_accuracy_score(d['test_labels'], pred.argmax(axis=1))
"delay_dur": 100,
"resp_dur": 25,
"kappa": 2.0,
"spon_rate": 0.1,
"tr_max_iter": 25001,
"test_max_iter": 2501
}
# Build task generators
generator, test_generator = build_generators(ExptDict)
# Define the input and expected output variable
input_var, target_var = T.tensor3s('input', 'target')
# Build the model
l_out, l_rec = build_model(input_var, ExptDict)
# The generated output variable and the loss function
if ExptDict["task"]["task_id"] in ['DE1', 'DE2', 'GDE2', 'VDE1', 'SINE']:
pred_var = lasagne.layers.get_output(l_out)
elif ExptDict["task"]["task_id"] in [
'CD1', 'CD2', 'Harvey2012', 'Harvey2012Dynamic', 'Harvey2016',
'COMP'
]:
pred_var = T.clip(lasagne.layers.get_output(l_out), 1e-6, 1.0 - 1e-6)
# Build loss
rec_act = lasagne.layers.get_output(l_rec)
l2_penalty = T.mean(
lasagne.objectives.squared_error(rec_act[:, -5:, :], 0.0)) * 1e-4
l2_params = regularize_network_params(l_out, l2, tags={'trainable': True})
splitPoint = int(np.ceil(len(minified_data) * 0.95))
train_data = ''.join(minified_data[:splitPoint])
test_data = ''.join(minified_data[splitPoint:])
char_to_idx = {ch: i for (i, ch) in enumerate(sorted(list(set(train_data + test_data))))}
idx_to_char = {i: ch for (ch, i) in char_to_idx.items()}
vocab_size = len(char_to_idx)
with open('../data/github_test_chars', 'r') as f:
project_seed = pickle.load(f)
initial_seed = ''.join(project_seed)
initial_seed = initial_seed.replace('\x1b', '\x0a')
missingKeys = set(initial_seed) - set(char_to_idx)
print 'Working on %d characters (%d unique).' % (len(train_data + test_data), vocab_size)
model = build_model(True, 1024, 1, 1, 3, vocab_size)
model.load_weights(path)
model.reset_states()
start_time = time.time()
for c in [char_to_idx[c] for c in initial_seed]:
batch = np.zeros((1, 1, vocab_size))
batch[0, 0, c] = 1
model.predict_on_batch(batch)
print("--- %s seconds ---" % (time.time() - start_time))
sampled = [char_to_idx[c] for c in seed]
for c in seed:
batch = np.zeros((1, 1, vocab_size))
batch[0, 0, char_to_idx[c]] = 1
def main(reps, pretrained_w_path, do_module1, init_seed=0, load_t=0, num_epochs=200,
batchsize=96, fine_tune=0, patience=500, lr_init = 1e-3, optim='adagrad', toy=0,
num_classes=23):
res_root = '/home/hoa/Desktop/projects/resources'
X_path=osp.join(res_root, 'datasets/msrcv2/Xaug_b01c.npy')
Y_path=osp.join(res_root, 'datasets/msrcv2/Y.npy')
MEAN_IMG_PATH=osp.join(res_root, 'models/ilsvrc_2012_mean.npy')
snapshot=50 # save model after every `snapshot` epochs
drop_p=0.5 # drop out prob.
lambda2=0.0005/2 # l2-regularizer constant
# step=patience/4 # decay learning after every `step` epochs
lr_patience=60 # for learning rate schedule, if optim=='momentum'
if toy: # unit testing
num_epochs=10
data_multi=3
reps = 2
#drop_p=0
#lambda2=0
# Create name tag for the experiment
if fine_tune:
full_or_tune = 'tune' # description tag for storing associated files
else:
full_or_tune = 'full'
time_stamp=time.strftime("%y%m%d%H%M%S", time.localtime())
snapshot_root = '../snapshot_models/'
snapshot_name = str(num_classes)+'alex'+time_stamp+full_or_tune
# LOADING DATA
print 'LOADING DATA ...'
X = np.load(X_path)
Y = np.load(Y_path)
if X.shape[1]!=3:
X = b01c_to_bc01(X)
N = len(Y)
print 'Raw X,Y shape', X.shape, Y.shape
if len(X) != len(Y):
print 'Inconsistent number of input images and labels. X is possibly augmented.'
MEAN_IMG = np.load(MEAN_IMG_PATH)
MEAN_IMG_227 = skimage.transform.resize(
np.swapaxes(np.swapaxes(MEAN_IMG,0,1),1,2), (227,227), mode='nearest', preserve_range=True)
MEAN_IMG = np.swapaxes(np.swapaxes(MEAN_IMG_227,1,2),0,1).reshape((1,3,227,227))
all_metrics = [] # store metrics in each run
time_profiles = {
'train_module1': [],
'train_module1_eff': [],
'train_module2': [],
'test': []
} # record training and testing time
# PREPARE THEANO EXPRESSION FOR BOTH MODULES
print 'COMPILING THEANO EXPRESSION ...'
input_var = T.tensor4('inputs')
target_var = T.imatrix('targets')
network = build_model(num_classes=num_classes, input_var=input_var)
# Create a loss expression for training
prediction = lasagne.layers.get_output(network)
loss = lasagne.objectives.binary_crossentropy(prediction, target_var)
weights = lasagne.layers.get_all_params(network, regularizable=True)
l2reg = theano.shared(floatX(lambda2))*T.sum([T.sum(w ** 2) for w in weights])
loss = loss.mean() + l2reg
lr = theano.shared(np.array(lr_init, dtype=theano.config.floatX))
lr_decay = np.array(1./3, dtype=theano.config.floatX)
# Create update expressions for training
params = lasagne.layers.get_all_params(network, trainable=True)
# last-layer case is actually very simple:
# `params` above is a list of all (W,b)-pairs
# Therefore last layer's (W,b) is params[-2:]
if fine_tune == 7: # tuning params from fc7 to fc8
params = params[-2:]
# elif fine_tune == 6: # tuning params from fc6 to fc8
# params = params[-4:]
# TODO adjust for per-layer training with local_lr
if optim=='momentum':
updates = lasagne.updates.nesterov_momentum(loss, params, learning_rate=lr, momentum=0.9)
elif optim=='rmsprop':
updates = lasagne.updates.rmsprop(loss, params, learning_rate=lr, rho=0.9, epsilon=1e-06)
elif optim=='adam':
updates = lasagne.updates.adam(
loss, params, learning_rate=lr, beta1=0.9, beta2=0.999, epsilon=1e-08)
elif optim=='adagrad':
updates = lasagne.updates.adagrad(loss, params, learning_rate=lr, epsilon=1e-06)
# Create a loss expression for validation/testing
test_prediction = lasagne.layers.get_output(network, deterministic=True)
test_loss = lasagne.objectives.binary_crossentropy(test_prediction,
target_var)
test_loss = test_loss.mean() + l2reg
# zero-one loss with threshold t = 0.5 for reference
# zero_one_loss = T.abs_((test_prediction > theano.shared(floatX(0.5))) - target_var).sum(axis=1)
#zero_one_loss /= target_var.shape[1].astype(theano.config.floatX)
#zero_one_loss = zero_one_loss.mean()
# Compile a function performing a backward pass (training step) on a mini-batch (by giving
# the updates dictionary) and returning the corresponding training loss:
bwd_fn = theano.function([input_var, target_var], loss, updates=updates,)
# Compile a second function performing a forward pass,
# returns validation loss, 0/1 Error, score i.e. Xout:
fwd_fn = theano.function([input_var, target_var], test_loss)
# Create a theano function for computing score
score = lasagne.layers.get_output(network, deterministic=True)
score_fn = theano.function([input_var], score)
def compute_score(X, Y, batchsize=batchsize, shuffle=False):
out = np.zeros(Y.shape)
batch_id = 0
for batch in iterate_minibatches(X, Y, batchsize, shuffle=False):
inputs, _ = batch
# Flip random half of the batch
flip_idx = np.random.choice(len(inputs),size=len(inputs)/2,replace=False)
if len(flip_idx)>1:
inputs[flip_idx] = inputs[flip_idx,:,:,::-1]
# Substract mean image
inputs = (inputs - MEAN_IMG).astype(theano.config.floatX)
# MEAN_IMG is broadcasted numpy-way, take note if want theano expression instead
if len(inputs)==batchsize:
out[batch_id*batchsize : (batch_id+1)*batchsize] = score_fn(inputs)
batch_id += 1
else:
out[batch_id*batchsize : ] = score_fn(inputs)
return out
try:
# MAIN LOOP FOR EACH RUN
for seed in np.arange(reps)+init_seed:
# reset learning rate
lr.set_value(lr_init)
print '\nRUN', seed, '...'
# Split train/val/test set
indicies = np.arange(len(Y))
Y_train_val, Y_test, idx_train_val, idx_test = train_test_split(
Y, indicies, random_state=seed, train_size=float(2)/3)
Y_train, Y_val, idx_train, idx_val = train_test_split(
Y_train_val, idx_train_val, random_state=seed)
print "Train/val/test set size:",len(idx_train),len(idx_val),len(idx_test)
idx_aug_train = data_aug(idx_train, mode='aug', isMat='idx', N=N)
Xaug_train = X[idx_aug_train]
Yaug_train = data_aug(Y_train, mode='aug', isMat='Y', N=N)
idx_aug_val = data_aug(idx_val, mode='aug', isMat='idx', N=N)
Xaug_val = X[idx_aug_val]
Yaug_val = data_aug(Y_val, mode='aug', isMat='Y', N=N)
# Module 2 training set is composed of module 1 training and validation set
idx_aug_train_val = data_aug(idx_train_val, mode='aug', isMat='idx', N=N)
Xaug_train_val = X[idx_aug_train_val]
Yaug_train_val = data_aug(Y_train_val, mode='aug', isMat='Y', N=N)
# Test set
X_test = X[idx_test]
# Y_test is already returned in the first train_test_split
print "Augmented train/val/test set size:",len(Xaug_train),len(Yaug_val), len(X_test)
print "Augmented (X,Y) dtype:", Xaug_train.dtype, Yaug_val.dtype
print "Processed Mean image:",MEAN_IMG.dtype,MEAN_IMG.shape
if toy: # try to overfit a tiny subset of the data
Xaug_train = Xaug_train[:batchsize*data_multi + batchsize/2]
Yaug_train = Yaug_train[:batchsize*data_multi + batchsize/2]
Xaug_val = Xaug_val[:batchsize + batchsize/2]
Yaug_val = Yaug_val[:batchsize + batchsize/2]
# Init by pre-trained weights, if any
if len(pretrained_w_path)>0:
layer_list = lasagne.layers.get_all_layers(network) # 22 layers
if pretrained_w_path.endswith('pkl'):
# load reference_net
# use case: weights initialized from pre-trained reference nets
f = open(pretrained_w_path, 'r')
w_list = pickle.load(f) # list of 11 (W,b)-pairs
f.close()
lasagne.layers.set_all_param_values(layer_list[-3], w_list[:-2])
# exclude (W,b) of fc8
# BIG NOTE: don't be confused, it's pure coincident that layer_list
# and w_list have the same index here. The last element of layer_list are
# [.., fc6, drop6, fc7, drop7, fc8], while w_list are
# [..., W, b, W, b, W, b] which, eg w_list[-4] and w_list[-3] correspond to
# params that are associated with fc7 i.e. params that connect drop6 to fc7
elif pretrained_w_path.endswith('npz'):
# load self-trained net
# use case: continue training from a snapshot model
with np.load(pretrained_w_path) as f: # NOTE: only load snapshot of the same `seed`
# w_list = [f['arr_%d' % i] for i in range(len(f.files))]
w_list = [f.items()['arr_%d' % i] for i in range(len(f.files))] # load from bkviz, one-time use
lasagne.layers.set_all_param_values(network, w_list)
elif pretrained_w_path.endswith('/'): # init from 1 of the 30 snapshots
from os import listdir
import re
files = [f for f in listdir(pretrained_w_path) if osp.isfile(osp.join(pretrained_w_path, f))]
for file_name in files:
regex_seed = 'full%d_' %seed
match_seed = re.search(regex_seed, file_name)
if match_seed:
regex = r"\d+[a-zA-Z]+\d+[a-zA-Z]+\d+\_\d+"
match = re.search(regex, file_name)
snapshot_name = match.group(0)
print snapshot_name
with np.load(osp.join(pretrained_w_path,snapshot_name)+'.npz') as f:
w_list = [f['arr_%d' % i] for i in range(len(f.files))]
lasagne.layers.set_all_param_values(network, w_list)
# START MODULE 1
module1_time = 0
if do_module1:
print 'MODULE 1'
training_history={}
training_history['iter_training_loss'] = []
training_history['iter_validation_loss'] = []
training_history['training_loss'] = []
training_history['validation_loss'] = []
training_history['learning_rate'] = []
# http://deeplearning.net/tutorial/gettingstarted.html#early-stopping
# early-stopping parameters
n_train_batches = Xaug_train.shape[0] / batchsize
if Xaug_train.shape[0] % batchsize != 0:
n_train_batches += 1
patience = patience # look as this many examples regardless
patience_increase = 2 # wait this much longer when a new best is found
lr_patience_increase = 1.01
improvement_threshold = 0.995 # a relative improvement of this much is
# considered significant; a significant test
# MIGHT be better
validation_frequency = min(n_train_batches, patience/2)
# go through this many
# minibatches before checking the network
# on the validation set; in this case we
# check every epoch
best_params = None
epoch_validation_loss = 0 # indicates that valid_loss has not been computed yet
best_validation_loss = np.inf
best_iter = -1
lr_iter = -1
test_score = 0.
start_time = time.time()
done_looping = False
epoch = 0
# Finally, launch the training loop.
print("Starting training...")
# We iterate over epochs:
print("\nEpoch\tTrain Loss\tValid Loss\tBest-ValLoss-and-Iter\tTime\tL.Rate")
sys.setrecursionlimit(10000)
try: # Early-stopping implementation
while (not done_looping) and (epoch<num_epochs):
# In each epoch, we do a full pass over the training data:
train_err = 0
train_batches = 0
start_time = time.time()
for batch in iterate_minibatches(Xaug_train, Yaug_train, batchsize, shuffle=True):
inputs, targets = batch
# Horizontal flip half of the images
bs = inputs.shape[0]
indices = np.random.choice(bs, bs / 2, replace=False)
inputs[indices] = inputs[indices, :, :, ::-1]
# Substract mean image
inputs = (inputs - MEAN_IMG).astype(theano.config.floatX)
# MEAN_IMG is broadcasted numpy-way, take note if want theano expression instead
train_err_batch = bwd_fn(inputs, targets)
train_err += train_err_batch
train_batches += 1
iter_now = epoch*n_train_batches + train_batches
training_history['iter_training_loss'].append(train_err_batch)
training_history['iter_validation_loss'].append(epoch_validation_loss)
if (iter_now+1) % validation_frequency == 0:
# a full pass over the validation data:
val_err = 0
#zero_one_err = 0
val_batches = 0
for batch in iterate_minibatches(Xaug_val, Yaug_val, batchsize, shuffle=False):
inputs, targets = batch
# Substract mean image
inputs = (inputs - MEAN_IMG).astype(theano.config.floatX)
# MEAN_IMG is broadcasted numpy-way, take note if want theano expression instead
val_err_batch = fwd_fn(inputs, targets)
val_err += val_err_batch
val_batches += 1
epoch_validation_loss = val_err / val_batches
if epoch_validation_loss < best_validation_loss:
if epoch_validation_loss < best_validation_loss*improvement_threshold:
patience = max(patience, iter_now * patience_increase)
# lr_patience *= lr_patience_increase
best_params = lasagne.layers.get_all_param_values(network)
best_validation_loss = epoch_validation_loss
best_iter = iter_now
lr_iter = best_iter
else: # decay learning rate if optim=='momentum'
if optim=='momentum' and (iter_now - lr_iter) > lr_patience:
lr.set_value(lr.get_value() * lr_decay)
lr_iter = iter_now
if patience <= iter_now:
done_looping = True
break
# Record training history
training_history['training_loss'].append(train_err / train_batches)
training_history['validation_loss'].append(epoch_validation_loss)
training_history['learning_rate'].append(lr.get_value())
epoch_time = time.time() - start_time
module1_time += epoch_time
# Then we print the results for this epoch:
print("{}\t{:.6f}\t{:.6f}\t{:.6f}\t{}\t{:.3f}\t{}".format(
epoch+1,
training_history['training_loss'][-1],
training_history['validation_loss'][-1],
best_validation_loss,
best_iter+1,
epoch_time,
training_history['learning_rate'][-1]
))
if (epoch+1)%snapshot==0: # TODO try to save weights at best_iter
snapshot_path_string = snapshot_root+snapshot_name+str(seed)+'_'+str(iter_now+1)
try: # use case: terminate experiment before reaching `reps`
np.savez(snapshot_path_string+'.npz', *best_params)
np.savez(snapshot_path_string+'_history.npz', training_history)
plot_loss(training_history, snapshot_path_string+'_loss.png')
# plot_conv_weights(lasagne.layers.get_all_layers(network)[1],
# snapshot_path_string+'_conv1weights_')
except KeyboardInterrupt, TypeError:
print 'Did not save', snapshot_name+str(seed)+'_'+str(iter_now+1)
pass
epoch += 1
except KeyboardInterrupt, MemoryError: # Sadly this can only catch KeyboardInterrupt
pass
print 'Training finished or KeyboardInterrupt (Training is never finished, only abandoned)'
module1_time_eff = module1_time / iter_now * best_iter
print('Total and Effective training time are {:.0f} and {:.0f}').format(
module1_time, module1_time_eff)
time_profiles['train_module1'].append(module1_time)
time_profiles['train_module1_eff'].append(module1_time_eff)
# Save model after num_epochs or KeyboardInterrupt
if (epoch+1)%snapshot!=0: # to avoid duplicate save
snapshot_path_string = snapshot_root+snapshot_name+str(seed)+'_'+str(iter_now+1)
if not toy:
try: # use case: terminate experiment before reaching `reps`
print 'Saving model...'
np.savez(snapshot_path_string+'.npz', *best_params)
np.savez(snapshot_path_string+'_history.npz', training_history)
plot_loss(training_history, snapshot_path_string+'_loss.png')
# plot_conv_weights(lasagne.layers.get_all_layers(network)[1],
# snapshot_path_string+'_conv1weights_')
except KeyboardInterrupt, TypeError:
print 'Did not save', snapshot_name+str(seed)+'_'+str(iter_now+1)
pass
# And load them again later on like this:
#with np.load('../snapshot_models/23alex16042023213910.npz') as f:
# param_values = [f['arr_%d' % i] for i in range(len(f.files))] # or
# training_history = f['arr_0'].items()
# lasagne.layers.set_all_param_values(network, param_values)
# END OF MODULE 1
# START MODULE 2
print '\nMODULE 2'
if not do_module1:
if pretrained_w_path.endswith('pkl'):
snapshot_name = str(num_classes)+'alexOTS' # short for "off-the-shelf init"
elif pretrained_w_path.endswith('npz'): # Resume from a SINGLE snapshot
# extract name pattern, e.g. '23alex16042023213910full10'
# from string '../snapshot_models/23alex16042023213910full10_100.npz'
import re
regex = r"\d+[a-zA-Z]+\d+[a-zA-Z]+\d+"
match = re.search(regex, pretrained_w_path)
snapshot_name = match.group(0)
elif pretrained_w_path.endswith('/'): # RESUMED FROM TRAINED MODULE 1 (ONE-TIME USE)
from os import listdir
import re
files = [f for f in listdir(pretrained_w_path) if osp.isfile(osp.join(pretrained_w_path, f))]
for file_name in files:
regex_seed = 'full%d_' %seed
match_seed = re.search(regex_seed, file_name)
if match_seed:
regex = r"\d+[a-zA-Z]+\d+[a-zA-Z]+\d+\_\d+"
match = re.search(regex, file_name)
snapshot_name = match.group(0)
print snapshot_name
with np.load(osp.join(pretrained_w_path,snapshot_name)+'.npz') as f:
w_list = [f['arr_%d' % i] for i in range(len(f.files))]
lasagne.layers.set_all_param_values(network, w_list)
else: # MAIN BRANCH - assume do_module1 is True AND have run `snapshot` epochs
if (epoch+1)>snapshot:
with np.load(snapshot_path_string+'.npz') as f: # reload the best params for module 1
w_list = [f['arr_%d' % i] for i in range(len(f.files))]
lasagne.layers.set_all_param_values(network, w_list)
score_train = compute_score(Xaug_train_val, Yaug_train_val)
start_time = time.time()
if load_t: # Server failed at the wrong time. We only have t backed-up
if pretrained_w_path.endswith('/'):
from os import listdir
import re
files = [f for f in listdir(pretrained_w_path) if osp.isfile(osp.join(pretrained_w_path, f))]
for file_name in files:
regex_seed = 'full%d_' %seed
match_seed = re.search(regex_seed, file_name)
if match_seed:
regex = r"\d+[a-zA-Z]+\d+[a-zA-Z]+\d+\_\d+"
match = re.search(regex, file_name)
snapshot_name = match.group(0)
t_train = np.load(osp.join('t','{0}.npy'.format(snapshot_name)))
else: # MAIN BRANCH
thresholds = Threshold(score_train, Yaug_train_val)
thresholds.find_t_for() # determine t_train for each score_train. It will take a while
t_train = np.asarray(thresholds.t)
print 't_train is in ', t_train.min(), '..', t_train.max()
# `thresholds` holds t_train vector in .t attribute
print('t_train produced in {:.3f}s').format(time.time()-start_time)
np.save('t/'+snapshot_name+str(seed)+'.npy', t_train)
# Predictive model for t
regr = linear_model.RidgeCV(cv=5)
# Ridge() is LinearClassifier() with L2-reg
regr.fit(score_train, t_train)
time_profiles['train_module2'].append(time.time()-start_time)
# END OF MODULE 2
# TESTING PHASE
start_time = time.time()
score_test = compute_score(X_test, Y_test)
t_test = regr.predict(score_test)
print 'original t_test is in ', min(t_test), '..', max(t_test)
t_test[t_test>1] = max(t_test[t_test<1])
t_test[t_test<0] = min(t_test[t_test>0]) # ! Keep t_test in [0,1]
print 'corrected t_test is in ', min(t_test), '..', max(t_test)
# Predict label
metrics = predict_label(score_test, Y_test, t_test, seed, num_classes, verbose=1)
time_profiles['test'].append(time.time()-start_time)
all_metrics.append(metrics)
def main(reps, pretrained_w_path, batchsize, init_seed=0, verbose=1,
num_classes=374, mode='ots', load_t=0, save_clf=1):
res_root = '/home/hoa/Desktop/projects/resources'
X_path=osp.join(res_root, 'datasets/corel5k/X_train_rgb.npy')
Y_path=osp.join(res_root, 'datasets/corel5k/Y_train.npy')
MEAN_IMG_PATH=osp.join(res_root, 'models/ilsvrc_2012_mean.npy')
# baseline_msrcv2_net = build_model(pretrained_w_path, num_classes)
### LOADING DATA
print 'LOADING DATA ...'
X = np.load(X_path)
Y = np.load(Y_path)
N = len(Y)
print 'Raw X,Y shape', X.shape, Y.shape
if len(X) != len(Y):
print 'Inconsistent number of input images and labels. X is possibly augmented.'
MEAN_IMG = np.load(MEAN_IMG_PATH)
MEAN_IMG_227 = skimage.transform.resize(
np.swapaxes(np.swapaxes(MEAN_IMG,0,1),1,2), (227,227), mode='nearest', preserve_range=True)
MEAN_IMG = np.swapaxes(np.swapaxes(MEAN_IMG_227,1,2),0,1).reshape((1,3,227,227))
# Prepare Theano variables for inputs
input_var = T.tensor4('inputs')
network = build_model(num_classes=num_classes, input_var=input_var)
layer_list = lasagne.layers.get_all_layers(network) # 22 layers
features = lasagne.layers.get_output(layer_list[-3], # get 'fc7' in network
deterministic=True)
feat_fn = theano.function([input_var], features)
def compute_feature(X, Y, batchsize=batchsize, shuffle=False):
out = np.zeros((len(Y), 4096))
batch_id = 0
for batch in iterate_minibatches(X, Y, batchsize, shuffle=False):
inputs, _ = batch
# Flip random half of the batch
flip_idx = np.random.choice(len(inputs),size=len(inputs)/2,replace=False)
if len(flip_idx)>1:
inputs[flip_idx] = inputs[flip_idx,:,:,::-1]
# Substract mean image
inputs = (inputs - MEAN_IMG).astype(theano.config.floatX)
# MEAN_IMG is broadcasted numpy-way, take note if want theano expression instead
if len(inputs)==batchsize:
out[batch_id*batchsize : (batch_id+1)*batchsize] = feat_fn(inputs)
batch_id += 1
else:
out[batch_id*batchsize : ] = feat_fn(inputs)
return out
all_metrics = [] # store all evaluation metrics
for seed in np.arange(reps)+init_seed:
print '\nRUN', seed, '...'
# Split train/val/test set
# indicies = np.arange(len(Y))
# Y_train_val, Y_test, idx_train_val, idx_test = train_test_split(
# Y, indicies, random_state=seed, train_size=float(2)/3)
# # Y_train, Y_val, idx_train, idx_val = train_test_split(
# Y_train_val, idx_train_val, random_state=seed)
# print "Train/val/test set size:",len(idx_train),len(idx_val),len(idx_test)
# idx_aug_train = data_aug(idx_train, mode='aug', isMat='idx')
# Xaug_train = X[idx_aug_train]
# Yaug_train = data_aug(Y_train, mode='aug', isMat='Y')
# idx_aug_val = data_aug(idx_val, mode='aug', isMat='idx')
# Xaug_val = X[idx_aug_val]
# Yaug_val = data_aug(Y_val, mode='aug', isMat='Y')
# Module 2 training set is composed of module 1 training and validation set
idx_train_val = np.arange(len(Y))
# idx_aug_train_val = data_aug(idx_train_val, mode='aug', isMat='idx')
# Xaug_train_val = X[idx_aug_train_val]
# Yaug_train_val = data_aug(Y, mode='aug', isMat='Y')
Xaug_train_val = data_aug(X, mode='noaug', isMat='X', N=N)
if Xaug_train_val.shape[1]!=3:
Xaug_train_val = b01c_to_bc01(Xaug_train_val)
Yaug_train_val = Y
# Test set
X_test = np.load(osp.join(res_root,'datasets/corel5k/X_test_rgb.npy'))
if X_test.shape[1]!=3:
X_test = b01c_to_bc01(X_test)
Y_test = np.load(osp.join(res_root,'datasets/corel5k/Y_test.npy'))
# load reference_net
f = open(pretrained_w_path, 'r')
w_list = pickle.load(f) # list of 11 (W,b)-pairs
f.close()
# Reset init weights
lasagne.layers.set_all_param_values(layer_list[-3], w_list[:-2])
# exclude (W,b) of fc8
# BIG NOTE: don't be confused, it's pure coincident that layer_list
# and w_list have the same index here. The last element of layer_list are
# [.., fc6, drop6, fc7, drop7, fc8], while w_list are
# [..., W, b, W, b, W, b] which, eg w_list[-4] and w_list[-3] correspond to
# params that are associated with fc7 i.e. params that connect drop6 to fc7
### Extracting features on fc7
feats_train = compute_feature(Xaug_train_val, Yaug_train_val)
if mode=="ots":
# OvR linear SVM classifier
start_time = time.time()
clf_path = '../snapshot_models/{0}{1}{2}.pkl'.format(num_classes,mode,seed)
if osp.exists(clf_path):
save_clf = 0
with open(clf_path, 'rb') as fid:
clf = pickle.load(fid)
print 'Loaded', clf_path
else:
clf = OneVsRestClassifier(LinearSVC())
clf.fit(feats_train, Yaug_train_val)
if save_clf:
with open(clf_path, 'wb') as fid:
# save classifier
pickle.dump(clf, fid)
# Prediction on test set
start_time = time.time()
# Feature extraction on test set
feats_test = compute_feature(X_test, Y_test)
y_pred = clf.predict(feats_test)
print('Prediction on test set: {:.1f}s').format(time.time()-start_time)
elif mode=="tune": # Module 2 of CNN-AT, only train the label scorer
print "MODULE 2"
clf = OneVsRestClassifier(LogisticRegression(C=2000)) # C=1/5e-4
clf.fit(feats_train, Yaug_train_val)
score_train = clf.predict_proba(feats_train)
# LABEL THRESHOLDER
if not load_t:
start_time = time.time()
thresholds = Threshold(score_train, Yaug_train_val)
thresholds.find_t_for() # determine t_train for each score_train. It will take a while
t_train = np.asarray(thresholds.t)
print 't_train is in ', t_train.min(), '..', t_train.max()
# `thresholds` holds t_train vector in .t attribute
print('t_train produced in {:.3f}s').format(time.time()-start_time)
np.save(osp.join('t', "{0}tune{1}.npy".format(num_classes,seed)), t_train)
else:
print 'Loading t_train in {0}tune{1}.npy'.format(num_classes,seed)
t_train = np.load(osp.join('t', "{0}tune{1}.npy".format(num_classes,seed)))
# ## Ridge regression for predicting t
regr = RidgeCV(cv=5)
# Ridge() is LinearClassifier() with L2-reg
regr.fit(score_train, t_train)
# TESTING PHASE
start_time = time.time()
feats_test = compute_feature(X_test, Y_test)
score_test = clf.predict_proba(feats_test)
t_test = regr.predict(score_test)
print 'original t_test is in ', min(t_test), '..', max(t_test)
epsilon = 1e-6
t_test[t_test>1] = max(t_test[t_test<1]) - epsilon
t_test[t_test<0] = 0 # ! Keep t_test in [0,1]
print 'corrected t_test is in ', min(t_test), '..', max(t_test)
y_pred = score_test > t_test.reshape((len(t_test),1))
# Evaluate
k=5
if k: # Evaluate@k
idx_k = np.where(y_pred.sum(1)==k) # Extract examples annotated by exactly k labels
Y_test = Y_test[idx_k]
y_pred = y_pred[idx_k]
print "Nr. of test images: %d" %len(idx_k[0])
metrics = produce_metrics(Y_test, y_pred, seed, num_classes, verbose=verbose)
all_metrics.append(metrics)
print '\nFINAL ESTIMATES FOR {0} IN {1} RUNS'.format(mode, len(all_metrics))
estimate_metrics(all_metrics)
np.save(osp.join('metrics',"{0}{1}_allmetrics.npy".format(num_classes,mode)), all_metrics)
LAYERS = 3
NUM_EPOCHS = 100
# Data loading
with open('../data/npm_chars_shuf', 'rb') as f:
minified_data = pickle.load(f)
splitPoint = int(np.ceil(len(minified_data) * 0.90))
train_data = ''.join(minified_data[:splitPoint])
test_data = ''.join(minified_data[splitPoint:])
char_to_idx = {ch: i for (i, ch) in enumerate(sorted(list(set(train_data + test_data))))}
idx_to_char = {i: ch for (ch, i) in char_to_idx.items()}
vocab_size = len(char_to_idx)
print 'Working on %d characters (%d unique).' % (len(train_data + test_data), vocab_size)
training_model = build_model(False, LSTM_SIZE, BATCH_SIZE, SEQ_LEN, LAYERS, vocab_size)
test_model = build_model(True, LSTM_SIZE, BATCH_SIZE, SEQ_LEN, LAYERS, vocab_size)
print training_model.summary()
starting_epoch = 0
avg_train_loss = 0
avg_train_acc = 0
avg_test_loss = 0
avg_test_acc = 0
prev_loss = 100
if path_to_model:
training_model.load_weights(path_to_model)
# TODO: Fix double digit epoch numbers
starting_epoch = int(path_to_model[-4]) # Conventionally take the number before the extension as an epoch to start