def transformations(request, q, transformation=None, format=None):
"""
Transformation of phenotypes
---
parameters:
- name: q
description: the primary id or doi of the phenotype
required: true
type: string
paramType: path
- name: transformation
description: the transformation to be calculates (if omitted, all transformations are returned)
required: false
type: string
paramType: path
produces:
- text/csv
- application/json
"""
doi = _is_doi(DOI_PATTERN_PHENOTYPE, q)
try:
id = doi if doi else int(q)
phenotype = Phenotype.objects.published().get(pk=id)
except:
return HttpResponse(status=404)
if request.method == "GET":
data = calculate_phenotype_transformations(phenotype, transformation)
return Response(data)
def transformation_results(request, pk):
"""
SHow transformation result
"""
phenotype = Phenotype.objects.get(id=pk)
data = calculate_phenotype_transformations(phenotype)
data['object'] = phenotype
return render(request, 'phenotypedb/transformation_results.html', data)
def rnaseq_transformation_results(request, pk):
"""
SHow transformation result
"""
rnaseq = RNASeq.objects.get(id=pk)
data = calculate_phenotype_transformations(rnaseq, rnaseq=True)
data['object'] = rnaseq
return render(request, 'phenotypedb/rnaseq_transformation_results.html',
data)