def __init__(self,
root=args.path4Image,
graph_type="AFF",
transofrms=None,
train=True,
test=False,
skip_untill=-1,
start_idx=0,
end_idx=None,
device=None):
self.label_list = load_img_name_list(args.path4train_images)
self.seg_label_dict = dict()
self.test = test
self.graph_type = graph_type # AFF|RW|GT
self.train_file = load_img_name_list(args.path4train_images)
self.skip_untill = skip_untill
self.start_idx = start_idx
if end_idx is None:
self.end_idx = len(self.label_list)
else:
self.end_idx = end_idx
self.device = device
print("self.device: ", self.device)
# self.ignore_list = [
# f.split(".")[0] for f in os.listdir(
# "/home/u7577591/pygcn/data/GCN_prediction/label/2020_7_9_17h"
# )]
self.ignore_list = []
def gen_dataset(predict_root=None,
destination="data_RES(2020)",
destination4visulization="RES38_PSEUDO_LABEL",
img_list_path=None):
"""
Generate all data for a DataSet
===
- save data in `./data`,include:
- rgbxy: the simplest features, nparray
- feature: the affinity features, each feature of node is 400+ dimensions, nparray
- train_idx: nparray, value: bool, shape: [H*W]
- test_idx: nparray, value: bool, shape: [H*W]
- label: one-hot label nparray, value: int, shape: [H*W]
"""
t_start = time.time()
print("")
if predict_root is None:
predict_root = os.path.join("..", "psa", "RES_CAM__")
# img_list = read_file('./train.txt')
img_list = load_img_name_list(img_list_path)
len_img_list = len(img_list)
print("len_img_list ", len_img_list)
# exclude = [
# "2007_000032", "2008_002350", "2008_004633", "2008_008057",
# "2010_000197"
# ]
for idx, name in enumerate(img_list, start=1): # segmentation_class:
print("===========\n[{}/{}]: {} generate data...".format(
idx, len_img_list, name))
gen_one_data(img_name=name,
predict_root=predict_root,
destination=destination,
destination4visulization=destination4visulization)
show_timing(time_start=t_start, time_end=time.time())
def train(n_split=1, process_id=1, GPU_id=0, use_lap=True):
"""
train whole dataset by calling train()
"""
os.environ["CUDA_VISIBLE_DEVICES"] = str(GPU_id)
time_now = datetime.datetime.today()
time_now = "{}_{}_{}_{}h".format(time_now.year, time_now.month,
time_now.day, time_now.hour)
descript = "dataset: {}, graph: {}, feature: {}, partial label: {}".format(
os.path.basename(args.path4Data), os.path.basename(args.path4AffGraph),
os.path.basename(args.path4node_feat),
os.path.basename(args.path4partial_label_label))
print("descript ", descript)
#args.path4GCN_label = os.path.join(args.path4GCN_label, time_now)
#args.path4GCN_logit = os.path.join(args.path4GCN_logit, time_now)
# Split dataset
len_dataset = len(load_img_name_list(args.path4train_images))
chunk = int(np.ceil(len_dataset / n_split))
start_idx = chunk * (int(process_id) - 1)
end_idx = start_idx + chunk if (start_idx +
chunk) < len_dataset else len_dataset
# Train a separate GCN for each image
gcn_train(descript=descript,
start_index=start_idx,
end_index=end_idx,
GPU=GPU_id)
def __init__(self,
root=args.path4Image,
graph_type="AFF",
start_idx=0,
end_idx=None,
device=None):
self.label_list = load_img_name_list(args.path4train_images)
self.seg_label_dict = dict()
# AFF
self.graph_type = graph_type
self.train_file = load_img_name_list(args.path4train_images)
self.start_idx = start_idx
self.end_idx = len(self.label_list) if end_idx is None else end_idx
self.device = device
print("self.device: ", self.device)
self.ignore_list = []
def apply(**kwargs):
parameter_dict = dict()
t_start = time.time()
time_now = datetime.datetime.today()
time_now = "{}_{}_{}_{}h{}m".format(time_now.year, time_now.month,
time_now.day, time_now.hour,
time_now.minute)
descript = ""
parameter_dict["num_cpu"] = os.cpu_count() // 2
parameter_dict["CRF_parameter"] = args.CRF
parameter_dict["path4saveCRF_label"] = args.path4Complete_label_label
parameter_dict["path4saveCRF_logit"] = args.path4Complete_label_logit
if "pred_root" not in kwargs.keys():
parameter_dict["pred_root"] = args.path4GCN_logit
else:
parameter_dict["pred_root"] = kwargs["pred_root"]
parameter_dict["f_list"] = args.path4train_images
evaluate_folder = parameter_dict["path4saveCRF_label"]
img_list = load_img_name_list(parameter_dict["f_list"])
# === load parameter
for k, v in kwargs.items():
if k in parameter_dict.keys():
if "CRF_parameter" == k:
parameter_dict[k] = eval(v)
else:
parameter_dict[k] = v
print("{}: {}".format(k, parameter_dict[k]))
print("path4saveCRF_label: ", parameter_dict["path4saveCRF_label"])
print("pred_root: ", parameter_dict["pred_root"])
p = Pool(parameter_dict["num_cpu"])
crfP = partial(crf,
prediction_root=parameter_dict["pred_root"],
save_path_label=parameter_dict["path4saveCRF_label"],
save_path_logit=parameter_dict["path4saveCRF_logit"],
CRF_parameter=parameter_dict["CRF_parameter"])
# run crf by multiprocessing
for _ in tqdm.tqdm(p.imap_unordered(crfP, img_list), total=len(img_list)):
pass
p.close()
p.join()
evaluate_dataset_IoU(file_list=parameter_dict["f_list"],
predicted_folder=evaluate_folder,
descript=descript,
path4GT=args.path4VOC_class_aug)
show_timing(time_start=t_start, time_end=time.time())
def PPL_generate(num_cpu=1):
"""
parallelly generate partial pseudo label
"""
topredion_rate = args.confident_ratio
pred_folder = args.path4CAM
save_folder = args.partial_label_label
save_folder_logit = args.partial_label_logit
folder_list = ['_DN_UP', '_DN', '_UP']
for f_ in folder_list:
if not os.path.exists(save_folder + f_):
os.makedirs(save_folder + f_)
torch.multiprocessing.set_start_method('spawn')
device = torch.device("cuda")
img_list = load_img_name_list(args.path4train_images)
print("type(img_list)", type(img_list))
p = Pool(num_cpu)
gen_partial_label_with_ratioP = partial(
gen_partial_label_with_ratio,
predict_root=pred_folder,
destination4visulization=save_folder,
destination4logit=save_folder_logit,
confident_region=topredion_rate,
device=device)
for _ in tqdm.tqdm(p.imap_unordered(gen_partial_label_with_ratioP,
img_list),
total=len(img_list)):
pass
p.close()
p.join()
evaluate_dataset_IoU(predicted_folder=save_folder + "_DN_UP")
def gen_label_from_data(destination,
root=os.path.join("..", "..", "..", "work", "User",
"pygcn", "data")):
"""
- Visualize the pseudo label used to train GCN , (IoU=54.63)
===
- the file (.ally and .x) in work/UserName/pygcn/data/ is need
- assume that the training data is use pickle to save
- e.g. xxx.allx | xxx.ally | xxx.x | xxx.y | ...
- assume .ally is prediction ont-hot label, type: np.array, shape: [H*W,21]
- H=np.ceil(H_original_size/8), W also so the same way
- assume .x is train_idx, type: list, shape: [<H*W], element: int not bool
"""
import pickle as pkl
import sys
t_start = time.time()
file_name_list = load_img_name_list(args.path4train_images)
print("file_name_list: ", len(file_name_list))
for file_name in file_name_list:
print("Read... {}".format(file_name))
"""
x: train_idx. [list]
y: test_idx. [list]
allx: features for train and test. [sparse matrix]
ally: labels, pseudo for train_idx, ground truth for test_idx. [np.array]
rgbxy: another feature for comparison. [np.array]
"""
seg_label = None
extension_list = ["ally", "x"]
objects = []
for ext in extension_list:
with open(
"{}.{}.{}".format(os.path.join(args.path4data, "ind"),
file_name, ext), 'rb') as f:
if sys.version_info > (3, 0):
objects.append(pkl.load(f, encoding='latin1'))
else:
objects.append(pkl.load(f))
seg_label, train_idx = tuple(objects)
print("seg_label.shape ", seg_label.shape)
print("type(train_idx[0]): ", type(train_idx[0]))
"""
find H,W
=============================================
"""
GT_seg = Image.open(os.path.join(args.path4Class, file_name + '.png'))
print("np.array(GT_seg).shape:", np.array(GT_seg).shape)
H_origin, W_origin = np.array(GT_seg).shape
H, W = int(np.ceil(H_origin / 8)), int(np.ceil(W_origin / 8))
seg_label_HW = np.argmax(seg_label, axis=1)
"""
reshape the seg_label from [H*W,21] to [H,W]
=============================================
"""
seg_label_HW = seg_label_HW.reshape(H, W)
train_idx_bool = np.zeros_like(seg_label_HW.reshape(-1))
print("train_idx_bool.shape ", train_idx_bool.shape)
train_idx_bool[:] = False
train_idx_bool[train_idx] = True
train_idx_bool = train_idx_bool.reshape(H, W)
print("np.array(train_idx).shape: ", np.array(train_idx).shape)
"""
upsampling label and savi it in a visualizable way
=============================================
"""
seg_label_HW_UP = F.interpolate(
torch.FloatTensor(seg_label_HW[np.newaxis, np.newaxis]),
size=(H_origin, W_origin),
mode='nearest').squeeze().cpu().numpy()
train_idx_bool_UP = np.zeros_like(seg_label_HW_UP.reshape(-1))
train_idx_bool_UP = F.interpolate(
torch.FloatTensor(train_idx_bool[np.newaxis, np.newaxis]),
size=(H_origin, W_origin),
mode='nearest').squeeze().cpu().numpy()
train_idx_bool_UP = np.asarray(train_idx_bool_UP, dtype=np.bool)
"""
save it!
=============================================
"""
folder_list = [
"VGG_CAM_PSEUDO_LABEL(54p63)HW", "VGG_CAM_PSEUDO_LABEL(54p63)HW_UP"
]
for folder in folder_list:
if not os.path.exists(folder):
os.mkdir(folder)
# save upsampling label
print("save upsamping label!!!")
scipy.misc.toimage(np.where(train_idx_bool_UP, seg_label_HW_UP, 255),
cmin=0,
cmax=255,
pal=colors_map,
mode='P').save(
os.path.join("VGG_CAM_PSEUDO_LABEL(54p63)HW_UP",
file_name + '.png'))
# save dowsampling label (used to train GCN)
print("save original label!!!")
scipy.misc.toimage(np.where(train_idx_bool, seg_label_HW, 255),
cmin=0,
cmax=255,
pal=colors_map,
mode='P').save(
os.path.join("VGG_CAM_PSEUDO_LABEL(54p63)HW",
file_name + '.png'))
scipy.misc.toimage(new_PPL_dn, cmin=0, cmax=255, pal=colors_map,
mode='P').save(
os.path.join(destination4visulization,
"{}.png".format(img_name)))
if __name__ == "__main__":
from os.path import join as opj
"""
- data_RES(UP_CRF_DN): apply CRF in upsample(original size) CAM
then save label & score in down sample
- data_RES(2020): apply CRF in downsample CAM
then save label & score in upsample
"""
# generate partial label >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
img_list = load_img_name_list(args.path4train_images)
t_start = time.time()
topredion_rate = .3
cam_mode = "cam"
if cam_mode == "irn":
pred_folder = "{}@PIL_near@confident_ratio_{}_UP".format(
opj(args.path4partial_label_label,
"RES_CAM_TRAIN_AUG_PARTIAL_PSEUDO_LABEL"), topredion_rate)
cam_folder = "PPL_mix_Bmap"
elif cam_mode == "rw":
pred_folder = "../psa/RES_RW_np"
cam_folder = "RES_RW_np"
else:
pred_folder = "../psa/RES_CAM_TRAIN_AUG"
cam_folder = "RES_CAM_TRAIN_AUG_PARTIAL_PSEUDO_LABEL"
def train2020(n_split=1, process_id=1, GPU_id=0, debug=False, use_lap=True):
"""
Use to train whole dataset by call train()
---
"""
# os.environ["CUDA_VISIBLE_DEVICES"] = ','.join(map(str, [0, 1, 2, 3]))
os.environ["CUDA_VISIBLE_DEVICES"] = str(GPU_id)
IOU_dic = {
.1: 78.07,
.2: 81.12,
.3: 81.65,
.4: 81.38,
.5: 80.98,
.7: 79.97,
.9: 78.83,
1.: 78.15
}
Occupy_dic = {
.1: 32.1,
.2: 34.53,
.3: 36.58,
.4: 38.32,
.5: 39.7,
.7: 41.65,
.9: 43.30,
1.: 44.49
}
time_now = datetime.datetime.today()
time_now = "{}_{}_{}_{}h".format(time_now.year, time_now.month,
time_now.day, time_now.hour)
# =======specify the paath and argument ===============
args.hid_unit = 40
args.max_epoch = 250
args.drop_rate = .3
args.confident_ratio = 0.3
# args.path4train_images | args.path4val_images
args.path4train_images = args.path4train_images
if getpass.getuser() == "u7577591":
args.path4AffGraph = os.path.join("/work/u7577591/irn",
"AFF_MAT_normalize_IRNet")
args.path4partial_label_label = os.path.join(
args.path4partial_label_label,
# "RES_CAM_TRAIN_AUG_PARTIAL_PSEUDO_LABEL@PIL_near@confident_ratio_{}_DN"
"RES_CAM_TRAIN_AUG_PARTIAL_PSEUDO_LABEL@PIL_near@confident_ratio_{}_cam_DN_johnney"
.format(args.confident_ratio))
args.path4node_feat = os.path.join(
"../../../work/" + getpass.getuser() + "/irn", "AFF_FEATURE_res50_W")
args.use_LP = False
args.use_lap = use_lap
descript = "dataset: {}, graph: {}, feature: {}, partial label: {}".format(
os.path.basename(args.path4data), os.path.basename(args.path4AffGraph),
os.path.basename(args.path4node_feat),
os.path.basename(args.path4partial_label_label))
descript = "GCN prediction@IRNet@KNN laplacian @loss_ent@ PPL confident ratio={} & IOU@{} occupy@{}".format(
args.confident_ratio, IOU_dic[args.confident_ratio],
Occupy_dic[args.confident_ratio])
print("descript ", descript)
print("here is branch `debug` !!")
# args.path4prediction_np = os.path.join(args.path4prediction_np,
# args.path4partial_label_label)
args.path4GCN_label = os.path.join(args.path4GCN_label, time_now)
args.path4GCN_logit = os.path.join(args.path4GCN_logit, time_now)
# ==== training in split dataset =======
len_dataset = len(load_img_name_list(args.path4train_images))
# n_split = 5
# process_id = __file__
# process_id = process_id[-4]
chunk = int(np.ceil(len_dataset / n_split))
start_idx = chunk * (int(process_id) - 1)
end_idx = start_idx + chunk if (start_idx +
chunk) < len_dataset else len_dataset
# ==== training =======
train(use_crf=False,
descript=descript,
start_index=start_idx,
end_index=end_idx,
GPU=GPU_id,
debug=debug)
# ===== plot iou on tersorboard and evaluate the mean IOU ======
if len(os.listdir(args.path4GCN_label)) == len(
load_img_name_list(args.path4train_images)):
plot_iou_tersorboard(predicted_folder=args.path4GCN_label)
evaluate_dataset_IoU(predicted_folder=args.path4GCN_label,
file_list=args.path4train_images)
