def __init__(self, app):
self.app = app
QtGui.QWidget.__init__(self, None)
self.synthplot = EMPlot2DWidget(self.app)
self.synthplot.show()
# overall layout
self.vbl1 = QtGui.QVBoxLayout()
self.setLayout(self.vbl1)
# First row contains general purpose controls
self.hbl1 = QtGui.QHBoxLayout()
self.vbl1.addLayout(self.hbl1)
self.vcell = ValBox(self, (0, 128.0), "Cell:", 64)
self.hbl1.addWidget(self.vcell)
self.vncells = ValBox(self, (0, 128.0), "n Cells:", 1)
self.hbl1.addWidget(self.vncells)
self.voversamp = ValBox(self, (0, 128.0), "Oversample:", 1)
self.hbl1.addWidget(self.voversamp)
self.targfn = None
self.vnsin = ValBox(self, (1, 64), "# Sin:", 16)
self.vnsin.intonly = 1
self.hbl1.addWidget(self.vnsin)
self.cbshowall = QtGui.QCheckBox("Show All")
self.hbl1.addWidget(self.cbshowall)
self.cbshifted = QtGui.QCheckBox("Shifted")
self.hbl1.addWidget(self.cbshifted)
self.cbtargfn = QtGui.QComboBox(self)
self.cbtargfn.addItem("None")
self.cbtargfn.addItem("triangle")
self.cbtargfn.addItem("square")
self.cbtargfn.addItem("square imp")
self.cbtargfn.addItem("delta")
self.cbtargfn.addItem("noise")
self.cbtargfn.addItem("saw")
self.cbtargfn.addItem("sin")
self.cbtargfn.addItem("modsin")
self.cbtargfn.addItem("modsin2")
self.cbtargfn.addItem("modsin3")
self.cbtargfn.addItem("sin low")
self.cbtargfn.addItem("doubledelta")
self.cbtargfn.addItem("sin bad f")
self.cbtargfn.addItem("sin bad f2")
self.hbl1.addWidget(self.cbtargfn)
# Widget containing valsliders
self.wapsliders = QtGui.QWidget(self)
# self.wapsliders.setMinimumSize(800,640)
self.gblap = QtGui.QGridLayout()
self.gblap.setSizeConstraint(QtGui.QLayout.SetMinAndMaxSize)
self.gblap.setColumnMinimumWidth(0, 250)
self.gblap.setColumnMinimumWidth(1, 250)
self.wapsliders.setLayout(self.gblap)
# ScrollArea providing view on slider container widget
self.wapsarea = QtGui.QScrollArea(self)
self.wapsarea.setWidgetResizable(True)
self.wapsarea.setWidget(self.wapsliders)
self.vbl1.addWidget(self.wapsarea)
QtCore.QObject.connect(self.vcell, QtCore.SIGNAL("valueChanged"),
self.recompute)
QtCore.QObject.connect(self.vncells, QtCore.SIGNAL("valueChanged"),
self.recompute)
QtCore.QObject.connect(self.voversamp, QtCore.SIGNAL("valueChanged"),
self.recompute)
QtCore.QObject.connect(self.vnsin, QtCore.SIGNAL("valueChanged"),
self.nsinchange)
QtCore.QObject.connect(self.cbshowall,
QtCore.SIGNAL("stateChanged(int)"),
self.recompute)
QtCore.QObject.connect(self.cbshifted,
QtCore.SIGNAL("stateChanged(int)"),
self.recompute)
QtCore.QObject.connect(self.cbtargfn, QtCore.SIGNAL("activated(int)"),
self.newtargfn)
self.wamp = []
self.wpha = []
self.curves = []
self.xvals = []
for i in range(65):
self.wamp.append(ValSlider(self, (0.0, 1.0), "%2d:" % i, 0.0))
self.gblap.addWidget(self.wamp[-1], i, 0)
QtCore.QObject.connect(self.wamp[-1],
QtCore.SIGNAL("valueChanged"),
self.recompute)
self.wpha.append(ValSlider(self, (-180.0, 180.0), "%2d:" % i, 0.0))
self.gblap.addWidget(self.wpha[-1], i, 1)
QtCore.QObject.connect(self.wpha[-1],
QtCore.SIGNAL("valueChanged"),
self.recompute)
self.curves.append(EMData(64, 1))
if self.cbshowall.isChecked():
self.synthplot
self.total = EMData(64, 1)
self.nsinchange()
def __init__(self,
imagenames,
voltage=None,
apix=None,
cs=None,
ac=10.0,
box=256,
ptcl=200):
"""The 'new' e2boxer interface.
"""
QtGui.QWidget.__init__(self, None)
# self.setWindowIcon(QtGui.QIcon(get_image_directory() + "ctf.png"))
self.data = None
self.curfilename = None # current selected file for boxing
self.filenames = imagenames # list of available filenames
self.micrograph = None
self.boxes = None
self.defaultvoltage = voltage
self.defaultapix = apix
self.defaultcs = cs
self.defaultac = ac
self.db = None # open JSON file for current image
self.wimage = EMImage2DWidget()
self.wimage.setWindowTitle("Micrograph")
self.wparticles = EMImageMXWidget()
self.wparticles.setWindowTitle("Particles")
self.wrefs = EMImageMXWidget()
self.wrefs.setWindowTitle("Box Refs")
self.wbadrefs = EMImageMXWidget()
self.wbadrefs.setWindowTitle("Bad Box Refs")
#self.wfft=EMImage2DWidget()
#self.wfft.setWindowTitle("e2evalimage - 2D FFT")
#self.wplot=EMPlot2DWidget()
#self.wplot.setWindowTitle("e2evalimage - Plot")
self.wimage.connect(self.wimage, QtCore.SIGNAL("mousedown"),
self.imgmousedown)
self.wimage.connect(self.wimage, QtCore.SIGNAL("mousedrag"),
self.imgmousedrag)
self.wimage.connect(self.wimage, QtCore.SIGNAL("mouseup"),
self.imgmouseup)
self.wparticles.connect(self.wparticles, QtCore.SIGNAL("mousedown"),
self.ptclmousedown)
self.wparticles.connect(self.wparticles, QtCore.SIGNAL("mousedrag"),
self.ptclmousedrag)
self.wparticles.connect(self.wparticles, QtCore.SIGNAL("mouseup"),
self.ptclmouseup)
self.wrefs.connect(self.wparticles, QtCore.SIGNAL("mousedown"),
self.refmousedown)
self.wrefs.connect(self.wparticles, QtCore.SIGNAL("mousedrag"),
self.refmousedrag)
self.wrefs.connect(self.wparticles, QtCore.SIGNAL("mouseup"),
self.refmouseup)
self.wimage.mmode = "app"
self.wparticles.mmode = "app"
# This object is itself a widget we need to set up
self.gbl = QtGui.QGridLayout(self)
self.gbl.setMargin(8)
self.gbl.setSpacing(6)
# Micrograph list
self.setlist = QtGui.QListWidget(self)
self.setlist.setSizePolicy(QtGui.QSizePolicy.Preferred,
QtGui.QSizePolicy.Expanding)
for i in imagenames:
self.setlist.addItem(i)
self.gbl.addWidget(self.setlist, 0, 0, 12, 2)
self.setlist.connect(self.setlist,
QtCore.SIGNAL("currentRowChanged(int)"),
self.newSet)
self.setlist.connect(self.setlist, QtCore.SIGNAL("keypress"),
self.listKey)
# Mouse Modes
self.mmode = "manual"
self.boxmm = QtGui.QGroupBox("Mouse Mode", self)
self.boxmm.setFlat(False)
self.gbl.addWidget(self.boxmm, 0, 2, 3, 2)
self.hbl0 = QtGui.QHBoxLayout(self.boxmm)
self.bmmanual = QtGui.QPushButton("Manual")
self.bmmanual.setToolTip(
"Manual selection of particles. No impact on autoselection.")
self.bmmanual.setAutoExclusive(True)
self.bmmanual.setCheckable(True)
self.bmmanual.setChecked(True)
self.hbl0.addWidget(self.bmmanual)
self.bmdel = QtGui.QPushButton("Delete")
self.bmdel.setToolTip(
"Delete particles from any mode. Can also shift-click in other mouse modes."
)
self.bmdel.setAutoExclusive(True)
self.bmdel.setCheckable(True)
self.hbl0.addWidget(self.bmdel)
self.bmgref = QtGui.QPushButton("Good Refs")
self.bmgref.setToolTip(
"Identify some good particles. Available to all autoboxers.")
self.bmgref.setAutoExclusive(True)
self.bmgref.setCheckable(True)
self.hbl0.addWidget(self.bmgref)
self.bmbref = QtGui.QPushButton("Bad Refs")
self.bmbref.setToolTip(
"Identify regions which should not be selected as particles.")
self.bmbref.setAutoExclusive(True)
self.bmbref.setCheckable(True)
self.hbl0.addWidget(self.bmbref)
QtCore.QObject.connect(self.bmmanual, QtCore.SIGNAL("clicked(bool)"),
self.setMouseManual)
QtCore.QObject.connect(self.bmdel, QtCore.SIGNAL("clicked(bool)"),
self.setMouseDel)
QtCore.QObject.connect(self.bmgref, QtCore.SIGNAL("clicked(bool)"),
self.setMouseGoodRef)
QtCore.QObject.connect(self.bmbref, QtCore.SIGNAL("clicked(bool)"),
self.setMouseBadRef)
# Global parameters
self.boxparm = QtGui.QGroupBox("Parameters", self)
self.boxparm.setFlat(False)
self.gbl.addWidget(self.boxparm, 3, 2, 3, 3)
self.gbl1 = QtGui.QGridLayout(self.boxparm)
self.gbl1.setMargin(8)
self.gbl1.setSpacing(6)
self.vbbsize = ValBox(label="Box Size:", value=box)
self.gbl1.addWidget(self.vbbsize, 0, 0)
self.vbbpsize = ValBox(label="Ptcl Size:", value=ptcl)
self.gbl1.addWidget(self.vbbpsize, 0, 1)
self.vbbapix = ValBox(label="A/pix:", value=apix)
self.gbl1.addWidget(self.vbbapix, 0, 2)
self.vbvoltage = ValBox(label="Voltage:", value=voltage)
self.gbl1.addWidget(self.vbvoltage, 1, 0)
self.vbbac = ValBox(label="% AC:", value=ac)
self.gbl1.addWidget(self.vbbac, 1, 1)
self.vbcs = ValBox(label="Cs:", value=cs)
self.gbl1.addWidget(self.vbcs, 1, 2)
# Autoboxing Tabs
self.autolbl = QtGui.QLabel("Autoboxing Methods:")
self.gbl.addWidget(self.autolbl, 7, 2)
self.autotab = QtGui.QTabWidget()
self.gbl.addWidget(self.autotab, 8, 2, 6, 3)
self.bautobox = QtGui.QPushButton("Autobox")
self.gbl.addWidget(self.bautobox, 7, 4)
QtCore.QObject.connect(self.bautobox, QtCore.SIGNAL("clicked(bool)"),
self.doAutoBox)
# Individual tabs from Dictionary
self.abwid = []
for name, bname, cls in GUIBoxer.aboxmodes:
w = QtGui.QWidget()
gl = QtGui.QGridLayout(w)
self.abwid.append((w, gl))
cls.setup_gui(gl)
self.autotab.addTab(w, name)
self.setWindowTitle("e2boxer21 - Control Panel")
self.wimage.show()
# self.wfft.show()
# self.wplot.show()
E2loadappwin("e2boxer21", "main", self)
E2loadappwin("e2boxer21", "image", self.wimage.qt_parent)
E2loadappwin("e2boxer21", "particles", self.wparticles.qt_parent)
E2loadappwin("e2boxer21", "refs", self.wrefs.qt_parent)
E2loadappwin("e2boxer21", "badrefs", self.wbadrefs.qt_parent)
self.newSet(0)
