def build(self):
print "Processing vars %s from file %s" % (str(
self.varnames), self.file_path)
plot_args = []
for varname in self.varnames:
var = self.file[varname]
var = var(
lon=(self.roi[0], self.roi[1]),
lat=(self.roi[2], self.roi[3]),
squeeze=1,
) if self.roi else var(squeeze=1, )
plot_args.append(var)
self.canvas = vcs.init()
self.canvas.drawlogooff()
self.gm = vcs.get3d_scalar(self.template) if (
self.ptype == '3d_scalar') else vcs.get3d_vector(self.template)
for pitem in self.parameters.items():
self.gm.setParameter(pitem[0], pitem[1])
plot_args.append(self.gm)
plot_kwargs = {'cdmsfile': self.file.id, 'window_size': (900, 600)}
self.canvas.setantialiasing(False)
self.canvas.plot(*plot_args, **plot_kwargs)
self.plot = self.canvas.backend.plotApps[self.gm]
def initialize(self):
print "initialize"
global renderer, renderWindow, renderWindowInteractor, cone, mapper, actor
# Bring used components
self.registerVtkWebProtocol(protocols.vtkWebMouseHandler())
self.registerVtkWebProtocol(protocols.vtkWebViewPort())
self.registerVtkWebProtocol(protocols.vtkWebViewPortImageDelivery())
self.registerVtkWebProtocol(protocols.vtkWebViewPortGeometryDelivery())
self.registerVtkWebProtocol(protocols.vtkWebFileBrowser('.', '.'))
# Create default pipeline (Only once for all the session)
# Update authentication key to use
self.updateSecret(_WebCone.authKey)
if not _WebCone.view:
# # VTK specific code
# renderer = vtk.vtkRenderer()
# renderWindow = vtk.vtkRenderWindow()
# renderWindow.AddRenderer(renderer)
# renderWindowInteractor = vtk.vtkRenderWindowInteractor()
# renderWindowInteractor.SetRenderWindow(renderWindow)
# renderWindowInteractor.GetInteractorStyle().SetCurrentStyleToTrackballCamera()
# cone = vtk.vtkConeSource()
# mapper = vtk.vtkPolyDataMapper()
# actor = vtk.vtkActor()
# mapper.SetInputConnection(cone.GetOutputPort())
# actor.SetMapper(mapper)
# renderer.AddActor(actor)
# renderer.ResetCamera()
# renderWindow.Render()
# VCS specific code
import vcs, cdms2, sys
x = vcs.init(bg=1)
f = cdms2.open(vcs.sample_data + "/geos5-sample.nc")
v = f["uwnd"]
dv3d = vcs.get3d_scalar()
dv3d.ToggleClipping = (40, 360, -28, 90)
dv3d.YSlider = (0.0, vcs.off)
dv3d.XSlider = (180.0, vcs.on)
dv3d.ZSlider = (0.0, vcs.on)
dv3d.ToggleVolumePlot = vcs.on
dv3d.ToggleSurfacePlot = vcs.on
dv3d.IsosurfaceValue = 31.0
dv3d.ScaleOpacity = [0.0, 1.0]
dv3d.BasemapOpacity = 0.5
dv3d.Camera = {
'Position': (-161, -171, 279),
'ViewUp': (.29, 0.67, 0.68),
'FocalPoint': (146.7, 8.5, -28.6)
}
dv3d.VerticalScaling = 5.0
dv3d.ScaleColormap = [-46.0, 48.0]
dv3d.ScaleTransferFunction = [12.0, 77.0]
x.plot(v, dv3d)
renderWindow = x.backend.renWin
# VTK Web application specific
_WebCone.view = renderWindow
self.getApplication().GetObjectIdMap().SetActiveObject(
"VIEW", renderWindow)
def simpleanimation():
import vcs, cdms2, sys
x = vcs.init()
f = cdms2.open(vcs.sample_data + "/clt.nc")
v = f["clt"]
dv3d = vcs.get3d_scalar()
x.plot(v, dv3d)
x.interact()
def simpleanimation():
import vcs, cdms2, sys
x = vcs.init()
f = cdms2.open(vcs.prefix+"/sample_data/clt.nc")
v = f["clt"]
dv3d = vcs.get3d_scalar()
x.plot( v, dv3d )
x.interact()
def initialize(self):
print "initialize"
global renderer, renderWindow, renderWindowInteractor, cone, mapper, actor
# Bring used components
self.registerVtkWebProtocol(protocols.vtkWebMouseHandler())
self.registerVtkWebProtocol(protocols.vtkWebViewPort())
self.registerVtkWebProtocol(protocols.vtkWebViewPortImageDelivery())
self.registerVtkWebProtocol(protocols.vtkWebViewPortGeometryDelivery())
self.registerVtkWebProtocol(protocols.vtkWebFileBrowser('.', '.'))
# Create default pipeline (Only once for all the session)
# Update authentication key to use
self.updateSecret(_WebCone.authKey)
if not _WebCone.view:
# # VTK specific code
# renderer = vtk.vtkRenderer()
# renderWindow = vtk.vtkRenderWindow()
# renderWindow.AddRenderer(renderer)
# renderWindowInteractor = vtk.vtkRenderWindowInteractor()
# renderWindowInteractor.SetRenderWindow(renderWindow)
# renderWindowInteractor.GetInteractorStyle().SetCurrentStyleToTrackballCamera()
# cone = vtk.vtkConeSource()
# mapper = vtk.vtkPolyDataMapper()
# actor = vtk.vtkActor()
# mapper.SetInputConnection(cone.GetOutputPort())
# actor.SetMapper(mapper)
# renderer.AddActor(actor)
# renderer.ResetCamera()
# renderWindow.Render()
# VCS specific code
import vcs, cdms2, sys
x = vcs.init(bg=1)
f = cdms2.open( vcs.sample_data+"/geos5-sample.nc" )
v = f["uwnd"]
dv3d = vcs.get3d_scalar()
dv3d.ToggleClipping = ( 40, 360, -28, 90 )
dv3d.YSlider = ( 0.0, vcs.off)
dv3d.XSlider = ( 180.0, vcs.on )
dv3d.ZSlider = ( 0.0, vcs.on )
dv3d.ToggleVolumePlot = vcs.on
dv3d.ToggleSurfacePlot = vcs.on
dv3d.IsosurfaceValue = 31.0
dv3d.ScaleOpacity = [0.0, 1.0]
dv3d.BasemapOpacity = 0.5
dv3d.Camera={ 'Position': (-161, -171, 279),
'ViewUp': (.29, 0.67, 0.68),
'FocalPoint': (146.7, 8.5, -28.6) }
dv3d.VerticalScaling = 5.0
dv3d.ScaleColormap = [ -46.0, 48.0 ]
dv3d.ScaleTransferFunction = [ 12.0, 77.0 ]
x.plot( v, dv3d )
renderWindow = x.backend.renWin
# VTK Web application specific
_WebCone.view = renderWindow
self.getApplication().GetObjectIdMap().SetActiveObject("VIEW", renderWindow)
def run_scalar_ctest( filename, varname, parms, template = "default" ):
import vcs, cdms2
x = vcs.init()
f = cdms2.open(vcs.sample_data+"/"+filename )
v = f[varname]
dv3d = vcs.get3d_scalar( template )
for item in parms.items():
dv3d.setParameter( item[0], item[1] )
x.plot( v, dv3d )
x.interact()
def run_scalar_ctest(filename, varname, parms, template="default"):
import vcs, cdms2
x = vcs.init()
f = cdms2.open(vcs.sample_data + "/" + filename)
v = f[varname]
dv3d = vcs.get3d_scalar(template)
for item in parms.items():
dv3d.setParameter(item[0], item[1])
x.plot(v, dv3d)
x.interact()
def build(self):
print "Processing vars %s from file %s" % ( str(self.varnames), self.file_path )
plot_args = []
for varname in self.varnames:
var = self.file[varname]
var = var( lon=( self.roi[0], self.roi[1] ), lat=( self.roi[2], self.roi[3] ), squeeze=1, ) if self.roi else var( squeeze=1, )
plot_args.append( var )
self.canvas = vcs.init()
self.gm = vcs.get3d_scalar( self.template ) if ( self.ptype == 'scalar' ) else vcs.get3d_vector( self.template )
for pitem in self.parameters.items():
self.gm.setParameter( pitem[0], pitem[1] )
plot_args.append( self.gm )
plot_kwargs = { 'cdmsfile': self.file.id, 'window_size': (900,600) }
self.canvas.plot( *plot_args, **plot_kwargs )
self.plot = self.canvas.backend.plotApps[ self.gm ]
def simplevolume():
import vcs, cdms2, sys
x = vcs.init()
f = cdms2.open(vcs.prefix+"/sample_data/geos5-sample.nc")
u = f["uwnd"]
dv3d = vcs.get3d_scalar()
dv3d.VerticalScaling = 3.0
dv3d.ScaleOpacity = [0.0, 0.8]
dv3d.ScaleColormap = [-46.0, 45, 1]
dv3d.ScaleTransferFunction = [8.6, 76.7, 1]
dv3d.BasemapOpacity = [0.5]
dv3d.XSlider = vcs.off
dv3d.ZSlider = vcs.off
dv3d.YSlider = vcs.off
dv3d.ToggleVolumePlot = vcs.on
dv3d.ToggleSurfacePlot = vcs.off
dv3d.Camera={'Position': (-161, -171, 279), 'ViewUp': (.29, 0.67, 0.68), 'FocalPoint': (146.7, 8.5, -28.6)}
x.plot( u, dv3d )
x.interact()
def simplevolume():
import vcs, cdms2, sys
x = vcs.init()
f = cdms2.open(vcs.sample_data + "/geos5-sample.nc")
u = f["uwnd"]
dv3d = vcs.get3d_scalar()
dv3d.VerticalScaling = 3.0
dv3d.ScaleOpacity = [0.0, 0.8]
dv3d.ScaleColormap = [-46.0, 45, 1]
dv3d.ScaleTransferFunction = [8.6, 76.7, 1]
dv3d.BasemapOpacity = [0.5]
dv3d.XSlider = vcs.off
dv3d.ZSlider = vcs.off
dv3d.YSlider = vcs.off
dv3d.ToggleVolumePlot = vcs.on
dv3d.ToggleSurfacePlot = vcs.off
dv3d.Camera = {
'Position': (-161, -171, 279),
'ViewUp': (.29, 0.67, 0.68),
'FocalPoint': (146.7, 8.5, -28.6)
}
x.plot(u, dv3d)
x.interact()
import vcs, cdms2, sys
x = vcs.init()
f = cdms2.open(sys.prefix+"/sample_data/clt.nc")
v = f["clt"]
dv3d = vcs.get3d_scalar('xyt')
x.plot( v, dv3d )
x.interact()
import vcs, cdms2, sys
x = vcs.init()
f = cdms2.open(vcs.prefix + "/sample_data/clt.nc")
v = f["clt"]
dv3d = vcs.get3d_scalar('Hovmoller3D')
dv3d.ToggleSurfacePlot = vcs.on
dv3d.ToggleVolumePlot = vcs.on
dv3d.IsosurfaceValue = [10.0]
dv3d.ToggleClipping = [-180.0, 175.0, -22.0, 90.0, 0.0, 119.0]
dv3d.ScaleTransferFunction = [80, 100, 1]
dv3d.ScaleOpacity = {'Volume': [0.0, 0.2]}
dv3d.ZSlider = (0.0, vcs.on)
dv3d.YSlider = (20.0, vcs.on)
dv3d.Camera = {
'Position': (436.8, -126.3, 285.2),
'ViewUp': (-0.5, 0.25, 0.83),
'FocalPoint': (9.6, 19.9, -3.2)
}
x.plot(v, dv3d)
x.interact()
print ' ---------- DV3D (Gfdv3d) member (attribute) listings ---------'
print 'name =', self.name
print 'axes =', self.axes
for pname in self.parameter_names:
pval = self.getParameter(pname)
print pname, '=', repr(pval)
class Gf3Dvector(Gfdv3d):
def __init__(self, Gfdv3d_name, Gfdv3d_name_src='default'):
self.g_name = '3d_vector'
Gfdv3d.__init__(self, Gfdv3d_name, Gfdv3d_name_src='default')
class Gf3Dscalar(Gfdv3d):
def __init__(self, Gfdv3d_name, Gfdv3d_name_src='default'):
self.g_name = '3d_scalar'
Gfdv3d.__init__(self, Gfdv3d_name, Gfdv3d_name_src='default')
self.VectorDisplay = Gfdv3d_name
class Gf3DDualScalar(Gfdv3d):
def __init__(self, Gfdv3d_name, Gfdv3d_name_src='default'):
self.g_name = '3d_dual_scalar'
Gfdv3d.__init__(self, Gfdv3d_name, Gfdv3d_name_src='default')
if __name__ == '__main__':
dv3d = vcs.get3d_scalar()
dv3d.script('/tmp/test.json')
f = cdms2.open( datasetPath )
varname = "U"
else:
dataDir1 = "/Users/tpmaxwell/data/AConaty/comp-ECMWF"
datasetPath = os.path.join( dataDir1, "geos5.xml")
f = cdms2.open( datasetPath )
varname = "uwnd"
# print "Reading variable %s in dataset %s " % ( varname, datasetPath )
# f = cdms2.open( os.path.join( sys.prefix, "sample_data", "geos5-sample.nc") )
# u = f["uwnd"]
# dv3d = vcs.create3d_scalar('hoffmuller','xyt')
u = f[varname]
if not u is None:
# dv3d = vcs.get3d_scalar('xyt')
dv3d = vcs.get3d_scalar()
x = vcs.init()
x.plot( u, dv3d, blocking=True )
x.interact()
else:
print>>sys.stderr, "\n\n Can't find variable %s in dataset %s" % ( varname, datasetPath )
@author: tpmaxwel
'''
import cdms2, cdutil, genutil
import vcs, os
image_check = False
if __name__ == '__main__':
import sys
f = cdms2.open( os.path.join( sys.prefix, "sample_data", "geos5-sample.nc") )
U = f["uwnd"]
U = U(lon=(-105.0, -15.0),lev=(1000.0, 0.10000000100000001),lat=(7.0, 50.0),squeeze=1,)
canvas = vcs.init()
gm3D_Scalar = vcs.get3d_scalar('default')
args = []
args.append(U)
gm3D_Scalar.VerticalScaling = 1.0
gm3D_Scalar.IsosurfaceValue = 24.463887522462002
gm3D_Scalar.ToggleVolumePlot = vcs.on
gm3D_Scalar.ScaleColormap = [-15.383988656109274, 10.447561660497996, 1]
gm3D_Scalar.ScaleTransferFunction = [6.016036405845739, 12.382244144298838, 1]
gm3D_Scalar.XSlider = -105.0
gm3D_Scalar.ScaleOpacity = [0.0, 0.42135967065922453]
gm3D_Scalar.Animation = 0.0
gm3D_Scalar.ZSlider = 0.0, vcs.on
gm3D_Scalar.YSlider = 7.0, vcs.on
kwargs = { 'cdmsfile': f.id }
args.append( gm3D_Scalar )
canvas.plot( *args, **kwargs )
def scalar_3d(name):
try:
obj = vcs.get3d_scalar(str(name))
except:
abort(404)
return jsonify(vcs.utils.dumpToDict(obj)[0])
import vcs, cdms2, sys
x = vcs.init()
f = cdms2.open(vcs.prefix+"/sample_data/clt.nc")
v = f["clt"]
dv3d = vcs.get3d_scalar('Hovmoller3D')
dv3d.ToggleSurfacePlot = vcs.on
dv3d.ToggleVolumePlot = vcs.on
dv3d.IsosurfaceValue = [ 10.0 ]
dv3d.ToggleClipping = [-180.0, 175.0, -22.0, 90.0, 0.0, 119.0 ]
dv3d.ScaleTransferFunction = [80, 100, 1]
dv3d.ScaleOpacity={ 'Volume': [0.0, 0.2] }
dv3d.ZSlider = ( 0.0, vcs.on )
dv3d.YSlider = ( 20.0, vcs.on )
dv3d.Camera={'Position': (436.8, -126.3, 285.2), 'ViewUp': (-0.5, 0.25, 0.83), 'FocalPoint': (9.6, 19.9, -3.2)}
x.plot( v, dv3d )
x.interact()
U_velocity = cdmsfile('U_velocity')
U_velocity = U_velocity(isobaric=(1000.0, 10.0),lon=(0.0, 359.0),time=('2011-5-20 0:0:0.0', '2011-5-20 0:0:0.0'),lat=(90.0, -90.0),squeeze=1,)
axesOperations = eval("{'lat': 'def', 'isobaric': 'def', 'lon': 'def', 'time': 'def'}")
for axis in list(axesOperations):
if axesOperations[axis] == 'sum':
U_velocity = cdutil.averager(U_velocity, axis='(%s)'%axis, weight='equal', action='sum')
elif axesOperations[axis] == 'avg':
U_velocity = cdutil.averager(U_velocity, axis='(%s)'%axis, weight='equal')
elif axesOperations[axis] == 'wgt':
U_velocity = cdutil.averager(U_velocity, axis='(%s)'%axis)
elif axesOperations[axis] == 'gtm':
U_velocity = genutil.statistics.geometricmean(U_velocity, axis='(%s)'%axis)
elif axesOperations[axis] == 'std':
U_velocity = genutil.statistics.std(U_velocity, axis='(%s)'%axis)
canvas = vcs.init()
gm3D_Scalar = vcs.get3d_scalar('default')
args = []
args.append(U_velocity)
gm3D_Scalar.axes = [['xyz']]
gm3D_Scalar.Colorbar = [[1]]
gm3D_Scalar.VerticalScaling = [5.0686491905313265]
gm3D_Scalar.IsosurfaceValue = [16.432937622070312]
gm3D_Scalar.ToggleVolumePlot = [[1]], vcs.on
gm3D_Scalar.ScaleColormap = [-14.551153825899483, 17.267348412394284, 1]
gm3D_Scalar.ScaleTransferFunction = [20.770853227597186, 81.085205, 1], vcs.on
gm3D_Scalar.XSlider = [119.87534943731247], vcs.on
gm3D_Scalar.ScaleOpacity = [1.0, 1.0]
gm3D_Scalar.Animation = [0.0]
gm3D_Scalar.ZSlider = [0.6777807722949307], vcs.on
gm3D_Scalar.YSlider = [21.796957974561707], vcs.on
gm3D_Scalar.BasemapOpacity = [0.5]
import vcs
import numpy
import cdms2
import MV2
# prepare some data
f = cdms2.open(vcs.sample_data + "/geos5-sample.nc")
clt = f("tmpu")
f = cdms2.open(vcs.sample_data + "/clt.nc")
clt = f("clt")
canvas = vcs.init()
dv3d = vcs.get3d_scalar("Hovmoller3D")
#dv3d.ToggleClipping = ( 40, 360, -28, 90 )
dv3d.ToggleVolumePlot = vcs.on
dv3d.VerticalScaling = 3.0
#dv3d.ToggleSurfacePlot = vcs.on
#dv3d.IsosurfaceValue = 31.0
#dv3d.ScaleOpacity = [0.0, 1.0]
#dv3d.BasemapOpacity = 0.5
dv3d.Camera = {
'Position': (-421, -991, 879),
'ViewUp': (.29, 0.77, 0.68),
'FocalPoint': (146.7, 8.5, -18.6)
}
#dv3d.ScaleColormap = [ -46.0, 48.0 ]
#dv3d.ScaleTransferFunction = [ 12.0, 77.0 ]
canvas.plot(clt, dv3d)