from victor_parser import VictorParser
from pylab import *
from matplotlib import font_manager
from matplotlib.backends.backend_pdf import PdfPages
import sys, os
if (not os.path.exists('../res')):
os.mkdir('../res')
vp = VictorParser()
fname = "../data/OD_eGFP_20100711_190.xls"
vp.parse_excel(fname)
#rcParams['text.usetex'] = True
rcParams['legend.fontsize'] = 12
#rcParams['font.family'] = 'sans-serif'
#rcParams['font.size'] = 8
#rcParams['lines.linewidth'] = 0.3
#rcParams['lines.markersize'] = 2
#rcParams['figure.figsize'] = [5, 10]
#rcParams['figure.subplot.hspace'] = 0.3
#figure()
fit_window_size = 1.5 # hours
fit_start_threshold = 0.01
columns = [('4K5', 0, 'y'),\
('GFP-A', 1, 'r'),\
('GFP-B', 2, 'g'),\
('GFP-C', 3, 'c'),\
('GFP-D', 4, 'c:'),\
(time, value) = vp.get_data(index, row, col)
time_array = hstack([time_array, time + last_t])
value_array = hstack([value_array, value])
if (len(time_array) > 0):
last_t = time_array.max()
return (time_array, value_array)
if (not os.path.exists('../res')):
os.mkdir('../res')
name = "elad_100903_ace_lux"
vp_vec = []
vp = VictorParser()
vp.parse_excel("../data/%s.xls" % (name))
vp_vec.append(vp)
pp = PdfPages('../res/%s.pdf' % name)
#rcParams['text.usetex'] = True
rcParams['legend.fontsize'] = 12
#rcParams['font.family'] = 'sans-serif'
#rcParams['font.size'] = 8
#rcParams['lines.linewidth'] = 0.3
#rcParams['lines.markersize'] = 2
#rcParams['figure.figsize'] = [5, 10]
#rcParams['figure.subplot.hspace'] = 0.3
#figure()
fit_window_size = 1.5 # hours
from victor_parser import VictorParser
from pylab import *
from matplotlib import font_manager
from matplotlib.backends.backend_pdf import PdfPages
import sys, os
if (not os.path.exists('../res')):
os.mkdir('../res')
vp = VictorParser()
name = "RBS-GFP 28-07-10"
fname = "../data/%s.xls" % name
if (not os.path.exists(fname)):
raise Exception("Cannot locate the Excel file: " + fname)
vp.parse_excel(fname)
pp = PdfPages('../res/%s.pdf' % name)
#rcParams['text.usetex'] = True
rcParams['legend.fontsize'] = 12
#rcParams['font.family'] = 'sans-serif'
#rcParams['font.size'] = 8
#rcParams['lines.linewidth'] = 0.3
#rcParams['lines.markersize'] = 2
#rcParams['figure.figsize'] = [5, 10]
#rcParams['figure.subplot.hspace'] = 0.3
#figure()
fit_window_size = 1.5 # hours
fit_start_threshold = 0.01
plot_types = [(0, "OD", 0.001, 1), (1, "GFP", 1e3, 1e6), ("divide", "GFP/OD", 1e4, 2e6)]
for vp in vp_vec:
(time, value) = vp.get_data(index, row, col)
time_array = hstack([time_array, time + last_t])
value_array = hstack([value_array, value])
if (len(time_array) > 0):
last_t = time_array.max()
return (time_array, value_array)
if (not os.path.exists('../res')):
os.mkdir('../res')
name = "elad_100903_ace_lux"
vp_vec = []
vp = VictorParser()
vp.parse_excel("../data/%s.xls" % (name))
vp_vec.append(vp)
pp = PdfPages('../res/%s.pdf' % name)
#rcParams['text.usetex'] = True
rcParams['legend.fontsize'] = 12
#rcParams['font.family'] = 'sans-serif'
#rcParams['font.size'] = 8
#rcParams['lines.linewidth'] = 0.3
#rcParams['lines.markersize'] = 2
#rcParams['figure.figsize'] = [5, 10]
#rcParams['figure.subplot.hspace'] = 0.3
#figure()
fit_window_size = 1.5 # hours
def get_data(index, row, col, vp1, vp2):
(time1, value1) = vp1.get_data(index, row, col)
(time2, value2) = vp2.get_data(index, row, col)
last_t1 = time1.max()
time = array([t for t in time1] + [(t + last_t1) for t in time2])
value = hstack([value1, value2])
return (time, value)
if (not os.path.exists('../res')):
os.mkdir('../res')
vp1 = VictorParser()
vp2 = VictorParser()
name = "d100805_elad_LUX"
vp1.parse_excel("../data/%s_1.xls" % name)
vp2.parse_excel("../data/%s_2.xls" % name)
pp = PdfPages('../res/%s.pdf' % name)
#rcParams['text.usetex'] = True
rcParams['legend.fontsize'] = 12
#rcParams['font.family'] = 'sans-serif'
#rcParams['font.size'] = 8
#rcParams['lines.linewidth'] = 0.3
#rcParams['lines.markersize'] = 2
#rcParams['figure.figsize'] = [5, 10]
#rcParams['figure.subplot.hspace'] = 0.3
#figure()
fit_window_size = 1.5 # hours
fit_start_threshold = 0.01
(time, value) = vp.get_data(index, row, col)
time_array = hstack([time_array, time + last_t])
value_array = hstack([value_array, value])
if (len(time_array) > 0):
last_t = time_array.max()
return (time_array, value_array)
if (not os.path.exists('../res')):
os.mkdir('../res')
name = "elad_100819_ace_lux"
vp_vec = []
for i in range(1, 3):
vp = VictorParser()
vp.parse_excel("../data/%s_%d.xls" % (name, i))
vp_vec.append(vp)
pp = PdfPages('../res/%s.pdf' % name)
#rcParams['text.usetex'] = True
rcParams['legend.fontsize'] = 12
#rcParams['font.family'] = 'sans-serif'
#rcParams['font.size'] = 8
#rcParams['lines.linewidth'] = 0.3
#rcParams['lines.markersize'] = 2
#rcParams['figure.figsize'] = [5, 10]
#rcParams['figure.subplot.hspace'] = 0.3
#figure()
fit_window_size = 1.5 # hours
