def test_dict_details(self):
# incomplete, only tests journal era subjects
schema = {
'type': 'object',
'required': ['journal'],
'properties': {
'journal': {
'type': 'object',
'required': ['top'],
'properties': {
'top': {
'required': ['era_subjects'],
'properties': {
'era_subjects': {
'type': 'array',
'items': era_subject_schema,
},
}
}
}
}
}
}
with app.app_context():
url = dev_request_url('/scenario/crwcRMtB/journal/1087-0792')
response = self.json_response(url)
test_name = u'scenario crwcRMtB, journal 1087-0792'
assert_schema(response, schema, test_name)
def test_scenario_raw(self):
schema = {
'type': 'object',
'required': [
'journals',
],
'properties': {
'journals': {
'type': 'array',
'items': journal_to_dict_raw_schema
},
}
}
with app.app_context():
for test_scenario in scenarios_to_check:
url = dev_request_url('scenario/{}/raw'.format(
test_scenario.scenario_id))
response = self.json_response(url)
test_name = u'{} ({}, from package {})'.format(
test_scenario.scenario_name, test_scenario.scenario_id,
test_scenario.package_id)
assert_schema(response, schema, test_name)
def test_scenario_table(self):
# incomplete, only tests journal era subjects
schema = {
'type': 'object',
'required': [
'journals',
],
'properties': {
'journals': {
'type': 'array',
'items': {
'type': 'object',
'required': ['meta'],
'properties': {
'meta': {
'type': 'object',
'required': ['era_subjects'],
'properties': {
'era_subjects': {
'type': 'array',
'items': era_subject_schema
}
}
}
}
}
}
}
}
with app.app_context():
for test_scenario in scenarios_to_check:
url = dev_request_url('scenario/{}/table'.format(
test_scenario.scenario_id))
response = self.json_response(url)
test_name = u'{} ({}, from package {})'.format(
test_scenario.scenario_name, test_scenario.scenario_id,
test_scenario.package_id)
assert_schema(response, schema, test_name)
def connect_db():
app.config['SQLALCHEMY_DATABASE_URI'] = 'sqlite:////var/clusters/test.db'
db.init_app(app)
with app.app_context():
# db.drop_all() # DEBUG uncomment to reset tables for debugging
db.create_all()
Copyright © 2018. Victor. All rights reserved.
"""
# This snippet is in public domain.
# However, please retain this link in your sources:
# http://flask.pocoo.org/snippets/120/
# Danya Alexeyevsky
from functools import wraps
from flask import session, redirect, current_app, request, url_for
from views import app
with app.app_context():
class Back(object):
"""To be used in views.
Use `anchor` decorator to mark a view as a possible point of return.
`url()` is the last saved url.
Use `redirect` to return to the last return point visited.
"""
cfg = current_app.config.get
cookie = cfg('REDIRECT_BACK_COOKIE', 'back')
default_view = cfg('REDIRECT_BACK_DEFAULT', 'index')
@staticmethod
def test_package_common(self):
package_schema = {
'definitions': {
'apc_authorship': {
'type': 'object',
'required': [
'package_id',
'apc',
'num_authors_total',
'num_authors_from_uni',
'issn_l',
'doi',
'journal_name',
'year',
'oa_status',
],
'properties': {
'package_id': {'type': 'string'},
'apc': {'type': ['number', 'null']},
'num_authors_total': {'type': 'number'},
'num_authors_from_uni': {'type': 'number'},
'issn_l': {'type': 'string'},
'doi': {'type': 'string'},
'journal_name': {'type': 'string'},
'year': {'type': 'number'},
'oa_status': {'type': 'string'},
}
},
'core_journal': {
'required': [
'package_id',
'issn_l',
'baseline_access',
],
'properties': {
'package_id': {'type': 'string'},
'issn_l': {'type': 'string'},
'baseline_access': {'type': 'string'},
}
},
'downloads_dict': {
'required': [
'issn_l',
'issns',
'publisher',
'subject',
'title',
'journal_is_oa',
'num_papers_2018',
'downloads_total',
'downloads_0y',
'downloads_1y',
'downloads_2y',
'downloads_3y',
'downloads_4y',
],
'properties': {
'issn_l': {'type': 'string'},
'issns': {'type': 'string'},
'publisher': {'type': ['string', 'null']},
'subject': {'type': ['string', 'null']},
'title': {'type': ['string', 'null']},
'journal_is_oa': {'type': ['string', 'null']},
'num_papers_2018': {'type': ['number', 'null']},
'downloads_total': {'type': ['number', 'null']},
'downloads_0y': {'type': ['number', 'null']},
'downloads_1y': {'type': ['number', 'null']},
'downloads_2y': {'type': ['number', 'null']},
'downloads_3y': {'type': ['number', 'null']},
'downloads_4y': {'type': ['number', 'null']},
}
},
'oa_journal_row': {
'required': [
'issn_l',
'year_int',
'fresh_oa_status',
'count',
'publisher',
],
'properties': {
'issn_l': {'type': ['string', 'null'],},
'year_int': {'type': 'number'},
'fresh_oa_status': {'type': 'string'},
'count': {'type': 'number'},
'publisher': {'type': 'string'}
},
'additionalProperties': False,
},
'oa_type_row': {
'type': 'object',
'patternProperties': {
'^[0-9]{4}-[0-9xX]{4}$': {
'type': 'array',
'items': {'$ref': '#/definitions/oa_journal_row'}
}
},
'properties': {
'null': {
'type': 'array',
'items': {'$ref': '#/definitions/oa_journal_row'}
}
},
'additionalProperties': False,
},
'oa_recent_journal_row': {
'required': [
'issn_l',
'fresh_oa_status',
'count',
'publisher',
],
'properties': {
'issn_l': {'type': ['string', 'null'], },
'fresh_oa_status': {'type': 'string'},
'count': {'type': 'number'},
'publisher': {'type': 'string'}
},
'additionalProperties': False,
},
'oa_recent_type_row': {
'type': 'object',
'patternProperties': {
'^[0-9]{4}-[0-9xX]{4}$': {
'type': 'array',
'items': {'$ref': '#/definitions/oa_recent_journal_row'}
}
},
'properties': {
'null': {
'type': 'array',
'items': {'$ref': '#/definitions/oa_recent_journal_row'}
}
},
'additionalProperties': False,
},
},
'type': 'object',
'required': [
'member_package_ids',
'apc',
'core_list',
'embargo_dict',
'unpaywall_downloads_dict_raw',
'oa',
'oa_recent',
'social_networks',
'society',
'num_papers',
],
'additionalProperties': True,
'properties': {
'member_package_ids': {
'type': 'array',
'items': {'type': 'string'}
},
'core_list': {
'type': 'object',
'patternProperties': {
'^[0-9]{4}-[0-9xX]{4}$': {'$ref': '#/definitions/core_journal'}
},
'properties': {
'null': {'$ref': '#/definitions/core_journal'}
},
'additionalProperties': False,
},
'embargo_dict': {
'type': 'object',
'patternProperties': {
'^[0-9]{4}-[0-9xX]{4}$': {'type': 'number'}
},
'properties': {
'null': {'type': 'number'}
},
'additionalProperties': False,
},
'unpaywall_downloads_dict_raw': {
'type': 'object',
'patternProperties': {
'^[0-9]{4}-[0-9xX]{4}$': {'$ref': '#/definitions/downloads_dict'}
},
'properties': {
'null': {'$ref': '#/definitions/downloads_dict'}
},
'additionalProperties': False,
},
'oa': {
'type': 'object',
'properties': {
'no_submitted_no_bronze': {'$ref': '#/definitions/oa_type_row'},
'no_submitted_with_bronze': {'$ref': '#/definitions/oa_type_row'},
'with_submitted_no_bronze': {'$ref': '#/definitions/oa_type_row'},
'with_submitted_with_bronze': {'$ref': '#/definitions/oa_type_row'},
},
'additionalProperties': False,
},
'oa_recent': {
'type': 'object',
'properties': {
'no_submitted_no_bronze': {'$ref': '#/definitions/oa_recent_type_row'},
'no_submitted_with_bronze': {'$ref': '#/definitions/oa_recent_type_row'},
'with_submitted_no_bronze': {'$ref': '#/definitions/oa_recent_type_row'},
'with_submitted_with_bronze': {'$ref': '#/definitions/oa_recent_type_row'},
},
'additionalProperties': False,
},
'social_networks': {
'type': 'object',
'patternProperties': {
'^[0-9]{4}-[0-9xX]{4}$': {'type': 'number'}
},
'properties': {
'null': {'type': 'number'}
},
'additionalProperties': False,
},
'society': {
'type': 'object',
'patternProperties': {
'^[0-9]{4}-[0-9xX]{4}$': {
'type': 'string',
'enum': ['YES', 'NO'],
}
},
'properties': {
'null': {
'type': 'string',
'enum': ['YES', 'NO'],
}
},
'additionalProperties': False,
},
'num_papers': {
'type': 'object',
'patternProperties': {
'^[0-9]{4}-[0-9xX]{4}$': {
'type': 'object',
'patternProperties': {
'^[0-9]{4}$': {
'type': 'number',
}
},
}
},
'additionalProperties': False,
},
'apc': {
'type': 'array',
'items': {'$ref': '#/definitions/apc_authorship'}
},
}
}
scenario_schema = {
'type': 'object',
'required': [
'counter_dict',
'authorship_dict',
'citation_dict',
],
'properties': {
'counter_dict': {
'type': 'object',
'patternProperties': {
'^[0-9]{4}-[0-9xX]{4}$': {'type': 'number'}
},
'properties': {
'null': {'type': 'number'}
},
'additionalProperties': False,
},
'authorship_dict': {
'type': 'object',
'patternProperties': {
'^[0-9]{4}-[0-9xX]{4}$': {
'type': 'object',
'patternProperties': {
'^[0-9]{4}$': {'type': 'number'}
},
}
},
'properties': {
'null': {
'type': 'object',
'patternProperties': {
'^[0-9]{4}$': {'type': 'number'}
},
}
},
'additionalProperties': False,
},
'citation_dict': {
'type': 'object',
'patternProperties': {
'^[0-9]{4}-[0-9xX]{4}$': {
'type': 'object',
'patternProperties': {
'^[0-9]{4}$': {'type': 'number'}
},
}
},
'properties': {
'null': {
'type': 'object',
'patternProperties': {
'^[0-9]{4}$': {'type': 'number'}
},
}
},
'additionalProperties': False,
},
},
'additionalProperties': True,
}
with app.app_context():
for test_package in packages_to_check:
url = dev_request_url('/live/data/common/{}'.format(test_package.package_id))
response = self.json_response(url)
test_name = u'{} {} ({})'.format(
test_package.institution.display_name,
test_package.package_name,
test_package.package_id
)
assert_schema(response, package_schema, test_name)
for member_package_id in response['member_package_ids']:
assert_schema(response[member_package_id], scenario_schema, test_name)
def main():
cache.init_app(app)
with app.app_context():
cache.clear()
print "Cleared cache"
def init_database():
# create the database tables
with app.app_context():
db.create_all()
# insert sample data
source = CedSource(
id="datacite", display_name="DataCite", icon_url="datacite.png"
)
event1 = CedEvent(
id="peeZ2knsGxRzvuw4NVW6",
doi="10.1039/c5ce01901j",
api_raw=dict(
{
"id": "80c78ffb-8d32-4de7-8023-1187dffdaef2",
"terms": "https://doi.org/10.13003/CED-terms-of-use",
"obj_id": "https://doi.org/10.1039/c5ce01901j",
"license": "https://creativecommons.org/publicdomain/zero/1.0/",
"subj_id": "https://doi.org/10.5517/cc13t0gd",
"source_id": "datacite",
"timestamp": "2017-06-28T04:23:34Z",
"occurred_at": "2014-12-01T14:09:33Z",
"source_token": "28276d12-b320-41ba-9272-bb0adc3466ff",
"message_action": "create",
"relation_type_id": "is_supplement_to",
}
),
occurred_at=datetime.strptime("2014-12-01", "%Y-%m-%d"),
normalized_subj_id="https://doi.org/10.5517/cc13t0gd",
uniqueness_key="08d64da78ed5223c2329d00350727581",
)
event2 = CedEvent(
id="XnXvJVPNq2FkWD4VD6uv",
doi="10.1039/c5ce01901j",
api_raw=dict(
{
"id": "4d6a48be-6d51-4d4b-be91-4d5929fa0ba0",
"terms": "https://doi.org/10.13003/CED-terms-of-use",
"obj_id": "https://doi.org/10.1039/c5ce01901j",
"license": "https://creativecommons.org/publicdomain/zero/1.0/",
"subj_id": "https://doi.org/10.5517/cc13t0hf",
"source_id": "datacite",
"timestamp": "2017-06-28T04:23:34Z",
"occurred_at": "2014-12-01T14:09:34Z",
"source_token": "28276d12-b320-41ba-9272-bb0adc3466ff",
"message_action": "create",
"relation_type_id": "is_supplement_to",
}
),
occurred_at=datetime.strptime("2014-12-01", "%Y-%m-%d"),
normalized_subj_id="https://doi.org/10.5517/cc13t0hf",
uniqueness_key="2ed6a1381d65683ec3c1ddf575d7709a",
)
db.session.add(source)
db.session.add(event1)
db.session.add(event2)
# Commit the changes
db.session.commit()
yield db
# remove tables
db.session.remove()
db.drop_all()
def init_db():
with app.app_context():
db = get_db()
with app.open_resource('schema.sql', mode='r') as f:
db.cursor().executescript(f.read())
db.commit()
def init_db():
with app.app_context():
db = get_db()
with app.open_resource('schema.sql', mode='r') as f:
db.cursor().executescript(f.read())
db.commit()
