def solr_igv(request):
"""Function for taking solr request url.
Removes pagination, facets from input query to create multiple
:param request: Django HttpRequest object including solr query
:type source: HttpRequest object.
:returns:
"""
# copy querydict to make it editable
if request.is_ajax():
igv_config = json.loads(request.body)
logger.debug(json.dumps(igv_config, indent=4))
logger.debug('IGV data query: ' + str(igv_config['query']))
logger.debug('IGV annotation query: ' + str(igv_config['annotation']))
if igv_config['query'] is None:
# generate solr_query method
# assay uuid
solr_query = generate_solr_params_for_assay(
{},
igv_config['assay_uuid']
)
url_path = '/'.join(["data_set_manager", "select"])
url = urljoin(settings.REFINERY_SOLR_BASE_URL, url_path)
igv_config['query'] = ''.join([url, '/?', solr_query])
# attributes associated with node selection from interface
node_selection_blacklist_mode = igv_config[
'node_selection_blacklist_mode']
node_selection = igv_config['node_selection']
solr_results = get_solr_results(
igv_config['query'], selected_mode=node_selection_blacklist_mode,
selected_nodes=node_selection)
if igv_config['annotation'] is not None:
solr_annot = get_solr_results(igv_config['annotation'])
else:
solr_annot = None
# if solr query returns results
if solr_results:
try:
session_urls = igv_multi_species(solr_results, solr_annot)
except GenomeBuild.DoesNotExist:
logger.error(
"Provided genome build cannot be found in the database.")
session_urls = "Couldn't find the provided genome build."
logger.debug("session_urls")
logger.debug(json.dumps(session_urls, indent=4))
return HttpResponse(json.dumps(session_urls),
content_type='application/json')
def solr_igv(request):
'''Function for taking solr request url.
Removes pagination, facets from input query to create multiple
:param request: Django HttpRequest object including solr query
:type source: HttpRequest object.
:returns:
'''
# copy querydict to make it editable
if request.is_ajax():
#logger.debug("solr_igv called: request is ajax")
#logger.debug(simplejson.dumps(request, indent=4))
igv_config = simplejson.loads(request.body)
logger.debug(simplejson.dumps(igv_config, indent=4))
logger.debug('IGV data query: ' + str(igv_config['query']))
logger.debug('IGV annotation query: ' + str(igv_config['annotation']))
# attributes associated with node selection from interface
node_selection_blacklist_mode = igv_config[
'node_selection_blacklist_mode']
node_selection = igv_config['node_selection']
solr_results = get_solr_results(
igv_config['query'],
selected_mode=node_selection_blacklist_mode,
selected_nodes=node_selection)
if igv_config['annotation'] is not None:
solr_annot = get_solr_results(igv_config['annotation'])
else:
solr_annot = None
# if solr query returns results
if solr_results:
try:
session_urls = igv_multi_species(solr_results, solr_annot)
except GenomeBuild.DoesNotExist:
logger.error(
"Provided genome build cannot be found in the database.")
session_urls = "Couldn't find the provided genome build."
logger.debug("session_urls")
logger.debug(simplejson.dumps(session_urls, indent=4))
return HttpResponse(simplejson.dumps(session_urls),
mimetype='application/json')
def solr_igv(request):
'''Function for taking solr request url.
Removes pagination, facets from input query to create multiple
:param request: Django HttpRequest object including solr query
:type source: HttpRequest object.
:returns:
'''
# copy querydict to make it editable
if request.is_ajax():
#logger.debug("solr_igv called: request is ajax")
#logger.debug(simplejson.dumps(request, indent=4))
igv_config = simplejson.loads( request.body );
logger.debug(simplejson.dumps( igv_config, indent=4))
logger.debug( 'IGV data query: ' + str( igv_config['query'] ) )
logger.debug( 'IGV annotation query: ' + str( igv_config['annotation'] ) )
# attributes associated with node selection from interface
node_selection_blacklist_mode = igv_config['node_selection_blacklist_mode']
node_selection = igv_config['node_selection']
solr_results = get_solr_results(igv_config['query'], selected_mode=node_selection_blacklist_mode, selected_nodes=node_selection)
if igv_config['annotation'] is not None:
solr_annot = get_solr_results(igv_config['annotation'])
else:
solr_annot = None
# if solr query returns results
if solr_results:
try:
session_urls = igv_multi_species(solr_results, solr_annot)
except GenomeBuild.DoesNotExist:
logger.error("Provided genome build cannot be found in the database.")
session_urls = "Couldn't find the provided genome build."
logger.debug("session_urls")
logger.debug(simplejson.dumps(session_urls, indent=4))
return HttpResponse(simplejson.dumps(session_urls),
mimetype='application/json')
