def disambiguate_author(author, vivo_authors=get_vivo_authors()):
"""
Given an author dictionary with name parts, find matches in the data structure returned by get_vivo_authors
:param author: dictionary of name parts
:param vivo_authors: authors in VIVO, seven dictionaries with seven keys based on various types of name parts
:return: list of uri in vivo matching the author
"""
author_uri_list = []
return author_uri_list
def disambiguate_author(author, vivo_authors=get_vivo_authors()):
"""
Given an author dictionary with name parts, find matches in the data structure returned by get_vivo_authors
:param author: dictionary of name parts
:param vivo_authors: authors in VIVO, seven dictionaries with seven keys based on various types of name parts
:return: list of uri in vivo matching the author
"""
author_uri_list = []
return author_uri_list
def disambiguate_author(author, vivo_authors):
"""
Given an author dictionary with name parts, find matches in the data structure returned by get_vivo_authors
:param author: dictionary of name parts
:param vivo_authors: authors in VIVO, seven dictionaries with seven keys based on various types of name parts
:return: list of uri in vivo matching the author
"""
author_uri_list = []
return author_uri_list
parms = get_parms()
data_in = read_csv_fp(sys.stdin)
print >> sys.stderr, len(data_in)
vivo_authors = get_vivo_authors(
parms) # get dictionaries of authors keyed by name parts
print >> sys.stderr, 'VIVO authors', len(vivo_authors)
print >> sys.stderr, vivo_authors
data_out = {}
row_out = 0
for row, data in data_in.items():
if data['uf'] == 'false': # Always put in the non-UF author as new
row_out += 1
data_out[row_out] = data
data_out[row_out]['uri'] = ''
else:
author_uris = disambiguate_author(data, vivo_authors)
if len(author_uris
) == 0: # Only put in a new UF author if no one at UF matches
row_out += 1
import sys
def disambiguate_author(author, vivo_authors=get_vivo_authors()):
"""
Given an author dictionary with name parts, find matches in the data structure returned by get_vivo_authors
:param author: dictionary of name parts
:param vivo_authors: authors in VIVO, seven dictionaries with seven keys based on various types of name parts
:return: list of uri in vivo matching the author
"""
author_uri_list = []
return author_uri_list
data_in = read_csv_fp(sys.stdin)
print >>sys.stderr, len(data_in)
vivo_authors = get_vivo_authors() # get dictionaries of authors keyed by name parts
print >>sys.stderr, 'VIVO authors', len(vivo_authors)
print >>sys.stderr, vivo_authors
data_out = {}
row_out = 0
for row, data in data_in.items():
if data['uf'] == 'false': # Always put in the non-UF author as new
row_out += 1
data_out[row_out] = data
data_out[row_out]['uri'] = ''
else:
author_uris = disambiguate_author(data, vivo_authors)
if len(author_uris) == 0: # Only put in a new UF author if no one at UF matches
row_out += 1
data_out[row_out] = data
def test_vivo_get_authors(self):
result = get_vivo_authors()
self.assertTrue(len(result) > 0)
