Exemplos de convert_peptide_to_possible_sequences em Python

Exemplo n.º 1

Arquivo: peptide_encoding_test.py Projeto: rthornton/coursera-bioinformatic

 def test_walk_reading_frame_for_sequences_simple2(self):
     peptide = "AM"
     # M - AUG
     # A - 'A': ['GCU, GCC, GCA, GCG'],
     possible_sequences = convert_peptide_to_possible_sequences(peptide)
     self.assertEqual(['GCUAUG', 'GCCAUG', 'GCAAUG', 'GCGAUG'],
                      possible_sequences)

Exemplo n.º 2

Arquivo: peptide_encoding_test.py Projeto: rthornton/coursera-bioinformatic

 def test_walk_reading_frame_for_sequences_simple(self):
     peptide = "MA"
     # M - AUG
     # A - 'A': ['GCU, GCC, GCA, GCG'],
     possible_sequences = convert_peptide_to_possible_sequences(peptide)
     self.assertEqual(['AUGGCU', 'AUGGCC', 'AUGGCA', 'AUGGCG'],
                      possible_sequences)

Exemplo n.º 3

Arquivo: peptide_encoding_test.py Projeto: rthornton/coursera-bioinformatic

 def test_walk_reading_frame_for_sequences_simple2(self):
     peptide = "AM"
     # M - AUG
     # A - 'A': ['GCU, GCC, GCA, GCG'],
     possible_sequences = convert_peptide_to_possible_sequences(peptide)
     self.assertEqual(['GCUAUG', 'GCCAUG', 'GCAAUG', 'GCGAUG'], possible_sequences)

Exemplo n.º 4

Arquivo: peptide_encoding_test.py Projeto: rthornton/coursera-bioinformatic

 def test_walk_reading_frame_for_sequences_simple(self):
     peptide = "MA"
     # M - AUG
     # A - 'A': ['GCU, GCC, GCA, GCG'],
     possible_sequences = convert_peptide_to_possible_sequences(peptide)
     self.assertEqual(['AUGGCU', 'AUGGCC', 'AUGGCA', 'AUGGCG'], possible_sequences)