def main():
"""
Runs a associator from the command-line. Calls JVM start/stop automatically.
Use -h to see all options.
"""
parser = argparse.ArgumentParser(
description='Executes an associator from the command-line. Calls JVM start/stop automatically.')
parser.add_argument("-j", metavar="classpath", dest="classpath", help="additional classpath, jars/directories")
parser.add_argument("-X", metavar="heap", dest="heap", help="max heap size for jvm, e.g., 512m")
parser.add_argument("-t", metavar="train", dest="train", required=True, help="training set file")
parser.add_argument("associator", help="associator classname, e.g., weka.associations.Apriori")
parser.add_argument("option", nargs=argparse.REMAINDER, help="additional associator options")
parsed = parser.parse_args()
jars = []
if parsed.classpath is not None:
jars = parsed.classpath.split(os.pathsep)
jvm.start(jars, max_heap_size=parsed.heap, packages=True)
logger.debug("Commandline: " + join_options(sys.argv[1:]))
try:
associator = Associator(classname=parsed.associator)
if len(parsed.option) > 0:
associator.options = parsed.option
loader = converters.loader_for_file(parsed.train)
data = loader.load_file(parsed.train)
associator.build_associations(data)
print(str(associator))
except Exception as e:
print(e)
finally:
jvm.stop()
def main():
"""
Runs a datagenerator from the command-line. Calls JVM start/stop automatically.
Use -h to see all options.
"""
parser = argparse.ArgumentParser(
description='Executes a data generator from the command-line. Calls JVM start/stop automatically.')
parser.add_argument("-j", metavar="classpath", dest="classpath", help="additional classpath, jars/directories")
parser.add_argument("-X", metavar="heap", dest="heap", help="max heap size for jvm, e.g., 512m")
parser.add_argument("datagenerator", help="data generator classname, e.g., "
+ "weka.datagenerators.classifiers.classification.LED24")
parser.add_argument("option", nargs=argparse.REMAINDER, help="additional data generator options")
parsed = parser.parse_args()
jars = []
if parsed.classpath is not None:
jars = parsed.classpath.split(os.pathsep)
jvm.start(jars, max_heap_size=parsed.heap, packages=True)
logger.debug("Commandline: " + join_options(sys.argv[1:]))
try:
generator = DataGenerator(classname=parsed.datagenerator)
if len(parsed.option) > 0:
generator.options = parsed.option
DataGenerator.make_data(generator, parsed.option)
except Exception as e:
print(e)
finally:
jvm.stop()
def affective_vectorizer(tweets, filename):
'''
Vectorizes the tweets and saves the vectors as csv.
:param tweets: list of tweets
:param filename: name of the saved file
'''
jvm.start(packages=True)
install_package('AffectiveTweets')
data = dataset.create_instances_from_lists([[t] for t in tweets])
filter = Filter(
classname=
'weka.filters.unsupervised.attribute.TweetToLexiconFeatureVector',
options=[
'-F', '-D', '-R', '-A', '-T', '-L', '-N', '-P', '-J', '-H', '-Q',
'-stemmer', 'weka.core.stemmers.NullStemmer', '-stopwords-handler',
'weka.core.tokenizers.TweetNLPTokenizer', '-I', '1', '-U',
'-tokenizer', 'weka.core.tokenizers.TweetNLPTokenizer'
])
filter.inputformat(data)
filtered_data = filter.filter(data)
converters.save_any_file(filtered_data, 'data/affect-vectors/' + filename)
jvm.stop()
def start_search(file_name, type): start = time.clock() # time Preprocessing tile_set, characteristic, nmrClass = read_file(file_name) calculate_char_heuristic(tile_set, characteristic) # do before you add the place holder tiles tile_set = generate_placeholders(tile_set, characteristic, nmrClass) # gets place holder tiles # kill jvm that was started after calling read file # the jvm is used for the machine learning filtering # so that weka can be run jvm.stop() calculate_order_heuristic(tile_set) # add up heuristic from all tiles and make starting node heuristic_val = 0 for tile in tile_set: heuristic_val += tile.heuristic_cost # print tile.heuristic_order_cost, # print tile.get_tile() root = Node(tile_set, [], heuristic_val, characteristic,0,0, heuristic=heuristic_val) # makes start state for search end = time.clock() # time Preprocessing print "Preprocessing Time: " + str(end-start) # picks algorithm if (int(type) == 0): # uniform cost search best_solution, node_count = aStar([root]) output_soultion(best_solution, node_count) elif (int(type) == 1): # puzzle building best_solution = puzzle_building_search([root])
def PredecirUnaTemporada(path):
jvm.start()
insta = CrearInstanciaParaPredecir(path)
atributos = ""
file = open('ModelData/wekaHeader.arff', 'r')
atributos = file.readlines()
file.close()
file = open('ModelData/predictionFiles/inst.arff', 'w')
file.writelines(atributos)
file.write("\n" + insta + '\n')
file.close()
objects = serialization.read_all("ModelData/77PercentModelPaisajes.model")
classifier = Classifier(jobject=objects[0])
loader = Loader()
data = loader.load_file("ModelData/predictionFiles/inst.arff")
data.class_is_last()
clases = ["invierno", "verano", "otono", "primavera"]
prediccion = ""
for index, inst in enumerate(data):
pred = classifier.classify_instance(inst)
dist = classifier.distribution_for_instance(inst)
prediccion = clases[int(pred)]
jvm.stop()
return prediccion
def main():
"""
Runs a associator from the command-line. Calls JVM start/stop automatically.
Use -h to see all options.
"""
parser = argparse.ArgumentParser(
description='Executes an associator from the command-line. Calls JVM start/stop automatically.')
parser.add_argument("-j", metavar="classpath", dest="classpath", help="additional classpath, jars/directories")
parser.add_argument("-X", metavar="heap", dest="heap", help="max heap size for jvm, e.g., 512m")
parser.add_argument("-t", metavar="train", dest="train", required=True, help="training set file")
parser.add_argument("associator", help="associator classname, e.g., weka.associations.Apriori")
parser.add_argument("option", nargs=argparse.REMAINDER, help="additional associator options")
parsed = parser.parse_args()
jars = []
if parsed.classpath is not None:
jars = parsed.classpath.split(os.pathsep)
jvm.start(jars, max_heap_size=parsed.heap, packages=True)
logger.debug("Commandline: " + join_options(sys.argv[1:]))
try:
associator = Associator(classname=parsed.associator)
if len(parsed.option) > 0:
associator.options = parsed.option
loader = converters.loader_for_file(parsed.train)
data = loader.load_file(parsed.train)
associator.build_associations(data)
print(str(associator))
except Exception as e:
print(e)
finally:
jvm.stop()
def run():
jvm.start()
load_csv = Loader("weka.core.converters.CSVLoader")
data_csv = load_csv.load_file(
"/Users/imeiliasantoso/web_graduate_project4/predict_page/predict_data.csv"
)
saver = Saver("weka.core.converters.ArffSaver")
saver.save_file(
data_csv,
"/Users/imeiliasantoso/web_graduate_project4/predict_page/predict_data.arff"
)
load_arff = Loader("weka.core.converters.ArffLoader")
data_arff = load_arff.load_file(
"/Users/imeiliasantoso/web_graduate_project4/predict_page/predict_data.arff"
)
data_arff.class_is_last()
global j48
J48_class = Classifier(classname="weka.classifiers.trees.J48",
options=["-C", "0.25", "-M", "2"])
J48_class.build_classifier(data_arff)
evaluationj48 = Evaluation(data_arff)
evaluationj48.crossvalidate_model(J48_class, data_arff, 10, Random(100))
j48 = str(evaluationj48.percent_correct)
jvm.stop()
return j48
def main():
data_provider = DataProvider(test_size=0.2)
jvm.start()
trainig_data = data_provider.get_weka_training_data() # for weka
try:
weka_bayes_network = WekaBayesNetwork(trainig_data['labels'],
ALL_ALGORITHMS['k2'])
weka_bayes_network.train_bayes(trainig_data['train_set'])
weka_bayes_network.draw_graph()
results = weka_bayes_network.predict_and_compare(
trainig_data['test_set'])
# trainig_data = data_provider.get_training_data() # for simple
# chow_liu_bayes_network = SimpleBayesNetwork(trainig_data['feature_names'], ALL_ALGORITHMS['chowLiu'])
# chow_liu_bayes_network.train_bayes(trainig_data['x_train'], trainig_data['y_train'])
# chow_liu_bayes_network.draw_graph()
# results = chow_liu_bayes_network.predict_and_compare(trainig_data['x_test'], trainig_data['y_test'])
print('correct_recurrences:', results['correct_recurrences'])
print('correct_no_recurrences:', results['correct_no_recurrences'])
print('incorrect_recurrences:', results['incorrect_recurrences'])
print('incorrect_no_recurrences:', results['incorrect_no_recurrences'])
except:
print('Exception was caught!')
tb = traceback.format_exc()
print(tb)
jvm.stop()
def main():
try:
jvm.start()
loader = Loader(classname="weka.core.converters.CSVLoader")
data = loader.load_file("./data/adult.csv")
data.class_is_last() # set class attribute
# randomize data
folds = k
seed = 1
rnd = Random(seed)
rand_data = Instances.copy_instances(data)
rand_data.randomize(rnd)
if rand_data.class_attribute.is_nominal:
rand_data.stratify(folds)
NaiveBayes(rand_data, folds, seed, data)
DecisionTree(rand_data, folds, seed, data)
except Exception as e:
raise e
finally:
jvm.stop()
def Feature_Selection(infile):
directory = os.getcwd() + '/'
csvpath = directory + infile
jvm.start(packages=True, max_heap_size="4g")
print "\n\n"
print "Loaded file: ", infile
csvloader = Loader(classname="weka.core.converters.CSVLoader")
csvdata = csvloader.load_file(csvpath)
remover = Filter(classname="weka.filters.unsupervised.attribute.Remove",
options=["-R", " 1"])
remover.inputformat(csvdata)
filtered_data = remover.filter(csvdata)
filtered_data.class_is_last()
search = ASSearch(classname="weka.attributeSelection.BestFirst",
options=["-D", "1", "-N", "5"])
evaluator = ASEvaluation(classname="weka.attributeSelection.CfsSubsetEval",
options=["-P", "1", "-E", "1"])
attribs = AttributeSelection()
attribs.search(search)
attribs.evaluator(evaluator)
attribs.select_attributes(filtered_data)
print "Summary of Attribute Selection: "
print attribs.results_string
jvm.stop()
return
def remove_package(pkg):
if packages.is_installed(pkg):
print("Removing %s..." % pkg)
packages.uninstall_package(pkg)
print("Removed %s, please re-run script!" % pkg)
jvm.stop()
sys.exit(0)
print('No such package is installed')
def start_up_weka(path):
try:
jvm.start()
uninstall_unofficial_packages(path)
install_packages(path)
finally:
jvm.stop()
def main():
"""
Runs a clusterer from the command-line. Calls JVM start/stop automatically.
Use -h to see all options.
"""
parser = argparse.ArgumentParser(
description='Performs clustering from the command-line. Calls JVM start/stop automatically.')
parser.add_argument("-j", metavar="classpath", dest="classpath", help="additional classpath, jars/directories")
parser.add_argument("-X", metavar="heap", dest="heap", help="max heap size for jvm, e.g., 512m")
parser.add_argument("-t", metavar="train", dest="train", required=True, help="training set file")
parser.add_argument("-T", metavar="test", dest="test", help="test set file")
parser.add_argument("-d", metavar="outmodel", dest="outmodel", help="model output file name")
parser.add_argument("-l", metavar="inmodel", dest="inmodel", help="model input file name")
parser.add_argument("-p", metavar="attributes", dest="attributes", help="attribute range")
parser.add_argument("-x", metavar="num folds", dest="numfolds", help="number of folds")
parser.add_argument("-s", metavar="seed", dest="seed", help="seed value for randomization")
parser.add_argument("-c", metavar="class index", dest="classindex", help="1-based class attribute index")
parser.add_argument("-g", metavar="graph", dest="graph", help="graph output file (if supported)")
parser.add_argument("clusterer", help="clusterer classname, e.g., weka.clusterers.SimpleKMeans")
parser.add_argument("option", nargs=argparse.REMAINDER, help="additional clusterer options")
parsed = parser.parse_args()
jars = []
if parsed.classpath is not None:
jars = parsed.classpath.split(os.pathsep)
params = []
if parsed.train is not None:
params.extend(["-t", parsed.train])
if parsed.test is not None:
params.extend(["-T", parsed.test])
if parsed.outmodel is not None:
params.extend(["-d", parsed.outmodel])
if parsed.inmodel is not None:
params.extend(["-l", parsed.inmodel])
if parsed.attributes is not None:
params.extend(["-p", parsed.attributes])
if parsed.numfolds is not None:
params.extend(["-x", parsed.numfolds])
if parsed.seed is not None:
params.extend(["-s", parsed.seed])
if parsed.classindex is not None:
params.extend(["-c", parsed.classindex])
if parsed.graph is not None:
params.extend(["-g", parsed.graph])
jvm.start(jars, max_heap_size=parsed.heap, packages=True)
logger.debug("Commandline: " + join_options(sys.argv[1:]))
try:
clusterer = Clusterer(classname=parsed.clusterer)
if len(parsed.option) > 0:
clusterer.options = parsed.option
print(ClusterEvaluation.evaluate_clusterer(clusterer, params))
except Exception as e:
print(e)
finally:
jvm.stop()
def stop():
"""
Stop a weka connection.
May be called multiple times, but note that a new connection
cannot be started after calling this.
"""
if MODULE_SUPPORTED:
jvm.stop()
def install_package(pkg):
# install weka package if necessary
if not packages.is_installed(pkg):
print("Installing %s..." % pkg)
packages.install_package(pkg)
print("Installed %s, please re-run script!" % pkg)
jvm.stop()
sys.exit(0)
print('Package already installed.')
def metadata_path_start(now, args, datasets_names, queue=None):
"""
Creates a metadata path for this run.
:param now: current time, as a datetime.datetime object.
:param args: args object, as generated by argparse library
:param datasets_names: names of datasets, as a list
:param queue: queue of processes
"""
jvm.start()
str_time = now.strftime('%d-%m-%Y-%H-%M-%S')
joined = os.getcwd() if not os.path.isabs(args.metadata_path) else ''
to_process = [args.metadata_path, str_time]
for path in to_process:
joined = os.path.join(joined, path)
if not os.path.exists(joined):
os.mkdir(joined)
with open(os.path.join(joined, 'parameters.json'), 'w') as f:
json.dump({k: getattr(args, k) for k in args.__dict__}, f, indent=2)
these_paths = []
for dataset_name in datasets_names:
local_joined = os.path.join(joined, dataset_name)
these_paths += [local_joined]
if not os.path.exists(local_joined):
os.mkdir(local_joined)
os.mkdir(os.path.join(local_joined, 'overall'))
y_tests = []
class_name = None
for n_fold in range(1, 11):
train_data, test_data = read_datasets(
os.path.join(args.datasets_path, dataset_name), n_fold)
y_tests += [test_data.values(test_data.class_attribute.index)]
class_name = train_data.class_attribute.name
# concatenates array of y's
pd.DataFrame(np.concatenate(y_tests),
columns=[class_name
]).to_csv(os.path.join(local_joined, 'overall',
'y_test.txt'),
index=False)
jvm.stop()
if queue is not None:
queue.put(these_paths)
return joined
def run_multi_subset_experiment(alg_names, ds_names):
try:
jvm.start()
for alg_name in alg_names:
run_subset_experiment(alg_name, ds_names)
except Exception as e:
print(traceback.format_exc())
finally:
jvm.stop()
def quit(self):
"""Ask if user want to quit. If yes, close the GUI.
"""
if tkMessageBox.askokcancel("Quit", "Do you want to quit?"):
try:
import weka.core.jvm as jvm
jvm.stop()
except:
pass
self._root.quit()
self._root.destroy()
def main(argv):
global input
global outputModel
global inputModel
global outputPrediction
global isTest
global my_list
input = " "
outputModel = " "
inputModel = " "
outputPrediction = " "
counter = 0
isTest = 0
my_list = []
try:
opts, args = getopt.getopt(argv, "hi:o:m:",
["ifile=", "ofile=", "mfile="])
print len(opts)
except getopt.GetoptError:
sys.exit(2)
if len(opts) == 3:
isTest = 1
else:
isTest = 0
for opt, arg in opts:
print arg
if len(opts) == 3:
if opt == "-i":
input = arg
elif opt == "-o":
outputPrediction = arg
elif opt == "-m":
inputModel = arg
else:
if opt == "-i":
input = arg
elif opt == "-o":
outputModel = arg
if isTest == 0:
import weka.core.jvm as jvm
jvm.start()
excractFeatures()
if isTest == 1:
import weka.core.jvm as jvm
jvm.start()
excractFeatures()
jvm.stop()
sys.exit()
def generate_folds(dataset_path, output_folder, n_folds=10, random_state=None):
"""
Given a dataset df, generate n_folds for it and store them in <output_folder>/<dataset_name>.
:type dataset_path: str
:param dataset_path: Path to dataset with .arff file extension (i.e my_dataset.arff)
:type output_folder: str
:param output_folder: Path to store both index file with folds and fold files.
:type n_folds: int
:param n_folds: Optional - Number of folds to split the dataset into. Defaults to 10.
:type random_state: int
:param random_state: Optional - Seed to use in the splitting process. Defaults to None (no seed).
"""
import warnings
warnings.filterwarnings('error')
dataset_name = dataset_path.split('/')[-1].split('.')[0]
af = load_arff(dataset_path)
df = load_dataframe(af)
skf = StratifiedKFold(n_splits=n_folds, shuffle=True, random_state=random_state)
fold_iter = skf.split(df[df.columns[:-1]], df[df.columns[-1]])
fold_index = dict()
jvm.start()
csv_loader = Loader(classname="weka.core.converters.CSVLoader")
arff_saver = Saver(classname='weka.core.converters.ArffSaver')
for i, (arg_rest, arg_test) in enumerate(fold_iter):
fold_index[i] = list(arg_test)
_temp_path = 'temp_%s_%d.csv' % (dataset_name, i)
fold_data = df.loc[arg_test] # type: pd.DataFrame
fold_data.to_csv(_temp_path, sep=',', index=False)
java_arff_dataset = csv_loader.load_file(_temp_path)
java_arff_dataset.relationname = af['relation']
java_arff_dataset.class_is_last()
arff_saver.save_file(java_arff_dataset, os.path.join(output_folder, '%s_fold_%d.arff' % (dataset_name, i)))
os.remove(_temp_path)
json.dump(
fold_index, open(os.path.join(output_folder, dataset_name + '.json'), 'w'), indent=2
)
jvm.stop()
warnings.filterwarnings('default')
def start_search(file_name, type): tile_set, characteristic, nmrClass = read_file(file_name) # gets data from file tile_set = generate_placeholders(tile_set, characteristic, nmrClass) # gets place holder tiles jvm.stop() root = Node(tile_set, [], 0.0, characteristic,0,0) # makes start state for search # picks algorithm if (int(type) == 0): # uniform cost search best_solution, node_count = uniform_cost([root]) output_soultion(best_solution, node_count) elif (int(type) == 1): # puzzle building best_solution = puzzle_building_search([root])
def evaluate(request, data):
decoded_data = unquote(data) if data else []
parsed_keys = parse_qs(decoded_data)
parsed_string = parsed_keys['keywords'][0]
filename = parsed_keys['filename'][0]
quantity = int(parsed_keys['quantity'][0])
startdate = parsed_keys['startdate'][0]
enddate = parsed_keys['enddate'][0]
language = parsed_keys['language'][0]
file_location = get_file_destinantion(filename)
if not path.exists(file_location):
return render(request, 'model_not_found.html')
keywords_parsed = parsed_string.split(',')
query = ' OR '.join(keywords_parsed)
tweets = []
jvm.start()
model = load_classification_model(filename)
tweetCriteria = manager\
.TweetCriteria()\
.setQuerySearch(query)\
.setSince(startdate)\
.setUntil(enddate)\
.setLang(language)\
.setMaxTweets(quantity)
tweets = manager.TweetManager.getTweets(tweetCriteria)
cleaned_tweets = get_cleaned_tweets(tweets)
dataset = create_dataset(cleaned_tweets)
predictions = evaluate_model_and_testset(model, dataset)
jvm.stop()
labels = model['classes']
values = get_value_of_classes(model['classes'], predictions)
fill_color = generate_random_colors(model['classes'])
predictions_colors = get_predictions_colors(predictions, model['classes'], fill_color)
data = {
"keywords": keywords_parsed if keywords_parsed else [],
"tweets": zip(tweets, cleaned_tweets, predictions, predictions_colors),
"size": len(tweets),
"labels": labels,
"values": values,
"fill_color": fill_color,
}
return render(request, 'evaluator.html', { "data": data })
def assign_classify(file_location, output="classified.out", model="naivebayes.model"):
data = read_csv_file(file_location)
jvm.start()
# load clusters
obj = serialization.read(model)
classifier = Classifier(jobject=obj)
# create file with cluster group
with open(output, 'w') as cluster_file:
for index, attrs in enumerate(data):
inst = Instance.create_instance(attrs[1:])
pred = classifier.classify_instance(inst)
print(str(index + 1) + ": label index=" + str(pred))
jvm.stop()
def predict(attributes):
jvm.start()
file_path = print_to_file(attributes)
# load the saved model
objects = serialization.read_all("/Users/hosyvietanh/Desktop/data_mining/trained_model.model")
classifier = Classifier(jobject=objects[0])
loader = Loader(classname="weka.core.converters.ArffLoader")
data = loader.load_file(file_path)
data.class_is_last()
for index, inst in enumerate(data):
pred = classifier.classify_instance(inst)
dist = classifier.distribution_for_instance(inst)
return int(pred)
jvm.stop()
def playback_speed_checker(inputFile, dirRef):
TRAINING_ARFF = 'dataset_playback.arff'
inputRef = ""
# Start JVM
jvm.start()
jvm.start(system_cp=True, packages=True)
jvm.start(max_heap_size="512m")
# Find reference file
for file in os.listdir(dirRef):
if str(file).find(str(os.path.basename(inputFile))) != -1:
inputRef = os.path.join(dirRef, file)
break
# Calculation distance
(result, distance) = dtw_checker(inputFile, inputRef)
# Loading data
loader = Loader(classname="weka.core.converters.ArffLoader")
data = loader.load_file(TRAINING_ARFF)
data.class_is_last() # set class attribute
# Train the classifier
#cls = Classifier(classname="weka.classifiers.functions.SMO")
cls = Classifier(classname="weka.classifiers.trees.J48", options = ["-C", "0.3", "-M", "10"])
cls.build_classifier(data)
# Classify instance
speed_instance = Instance.create_instance(numpy.ndarray(distance), classname='weka.core.DenseInstance', weight=1.0)
speed_instance.dataset = data
# Classify instance
speed_flag = cls.classify_instance(speed_instance)
if (distance == 0):
speed_class = 'nominal'
else:
if speed_flag == 0: speed_class = 'down_speed'
if speed_flag == 0: speed_class = 'up_speed'
# print os.path.basename(inputFile) + ' --- ' + speed_class
# Stop JVM
jvm.stop()
print "SPEED IS: " + speed_class
return speed_class
def start_search(file_name, type):
tile_set, characteristic, nmrClass = read_file(
file_name) # gets data from file
tile_set = generate_placeholders(tile_set, characteristic,
nmrClass) # gets place holder tiles
jvm.stop()
root = Node(tile_set, [], 0.0, characteristic, 0,
0) # makes start state for search
# picks algorithm
if (int(type) == 0): # uniform cost search
best_solution, node_count = uniform_cost([root])
output_soultion(best_solution, node_count)
elif (int(type) == 1): # puzzle building
best_solution = puzzle_building_search([root])
def query_instance(attributes, model="out.model"):
"""
get the cluster for defined attributes
:params attributes: array or list
:returns: cluster id
"""
jvm.start()
# create instance
inst = Instance(attributes)
# load model
obj = serialization.read(model)
# load cluster and get the cluster_id
cluster = Clusterer(jobject=obj)
cluster_id = cluster.cluster_instance(inst)
jvm.stop()
return cluster_id
def main():
"""
Runs attribute selection from the command-line. Calls JVM start/stop automatically.
Use -h to see all options.
"""
parser = argparse.ArgumentParser(
description='Performs attribute selection from the command-line. Calls JVM start/stop automatically.')
parser.add_argument("-j", metavar="classpath", dest="classpath", help="additional classpath, jars/directories")
parser.add_argument("-X", metavar="heap", dest="heap", help="max heap size for jvm, e.g., 512m")
parser.add_argument("-i", metavar="input", dest="input", required=True, help="input file")
parser.add_argument("-c", metavar="class index", dest="classindex", help="1-based class attribute index")
parser.add_argument("-s", metavar="search", dest="search", help="search method, classname and options")
parser.add_argument("-x", metavar="num folds", dest="numfolds", help="number of folds")
parser.add_argument("-n", metavar="seed", dest="seed", help="the seed value for randomization")
parser.add_argument("evaluator", help="evaluator classname, e.g., weka.attributeSelection.CfsSubsetEval")
parser.add_argument("option", nargs=argparse.REMAINDER, help="additional evaluator options")
parsed = parser.parse_args()
jars = []
if parsed.classpath is not None:
jars = parsed.classpath.split(os.pathsep)
params = []
if parsed.input is not None:
params.extend(["-i", parsed.input])
if parsed.classindex is not None:
params.extend(["-c", parsed.classindex])
if parsed.search is not None:
params.extend(["-s", parsed.search])
if parsed.numfolds is not None:
params.extend(["-x", parsed.numfolds])
if parsed.seed is not None:
params.extend(["-n", parsed.seed])
jvm.start(jars, max_heap_size=parsed.heap, packages=True)
logger.debug("Commandline: " + join_options(sys.argv[1:]))
try:
evaluation = ASEvaluation(classname=parsed.evaluator)
if len(parsed.option) > 0:
evaluation.options = parsed.option
print(AttributeSelection.attribute_selection(evaluation, params))
except Exception as e:
print(e)
finally:
jvm.stop()
def dict2arff(self, fileIn, fileOut):
'''
:param fileIn: name of csv file
:param fileOut: name of new arff file
:return:
'''
dataIn = os.path.join(self.dataDir, fileIn)
dataOut = os.path.join(self.dataDir, fileOut)
logger.info('[%s] : [INFO] Starting conversion of %s to %s', datetime.fromtimestamp(time.time()).strftime('%Y-%m-%d %H:%M:%S'), dataIn, dataOut)
try:
jvm.start()
convertCsvtoArff(dataIn, dataOut)
except Exception as inst:
pass
finally:
logger.error('[%s] : [ERROR] Exception occured while converting to arff with %s and %s', datetime.fromtimestamp(time.time()).strftime('%Y-%m-%d %H:%M:%S'), type(inst), inst.args)
jvm.stop()
logger.info('[%s] : [INFO] Finished conversion of %s to %s', datetime.fromtimestamp(time.time()).strftime('%Y-%m-%d %H:%M:%S'), dataIn, dataOut)
def riaa_checker(inputFile):
TRAINING_ARFF = 'C:\Users\ASUS\Desktop\IGNASI\SMC\Workspace\dataset_riaa.arff'
# Start JVM
jvm.start()
jvm.start(system_cp=True, packages=True)
jvm.start(max_heap_size="512m")
# Calculation of bark bands information
(absolute_bark, relative_bark, bark_ratios) = compute_bark_spectrum(inputFile)
# Loading data
loader = Loader(classname="weka.core.converters.ArffLoader")
data = loader.load_file(TRAINING_ARFF)
data.class_is_last() # set class attribute
# Train the classifier
cls = Classifier(classname="weka.classifiers.functions.SMO")
#cls = Classifier(classname="weka.classifiers.trees.J48", options = ["-C", "0.3", "-M", "10"])
cls.build_classifier(data)
# Classify instance
bark_instance = Instance.create_instance(bark_ratios, classname='weka.core.DenseInstance', weight=1.0)
bark_instance.dataset = data
# Classify instance
riaa_flag = cls.classify_instance(bark_instance)
if riaa_flag == 0:
riaa_class = 'riaa_ok'
else:
riaa_class = 'riaa_ko'
# print os.path.basename(inputFile) + ' --- ' + riaa_class
# Stop JVM
jvm.stop()
print "RIAA FILTERING?: " + riaa_class
return riaa_class
def batch_riaa_checking(inputDir):
# Start JVM
jvm.start()
jvm.start(system_cp=True, packages=True)
jvm.start(max_heap_size="512m")
riaa_ok = 0
riaa_ko = 0
for file in os.listdir(inputDir):
if file.endswith(".wav"):
riaa_flag = riaa_checker(os.path.join(inputDir, file))
if (riaa_flag == 'riaa_ko'): riaa_ko+=1
if (riaa_flag == 'riaa_ok'): riaa_ok+=1
# Stop JVM
jvm.stop()
return (riaa_ko, riaa_ok)
def classify(train, test, name="RF", tuning=False):
jvm.start()
if isinstance(train, list) and isinstance(test, list):
train = weka_instance(train)
trn_data = converters.load_any_file(train)
test = weka_instance(test)
tst_data = converters.load_any_file(test)
elif os.path.isfile(train) and os.path.isfile(test):
trn_data = converters.load_any_file(train)
tst_data = converters.load_any_file(test)
else:
trn = csv_as_ndarray(train)
tst = csv_as_ndarray(test)
trn_data = converters.ndarray_to_instances(trn, relation="Train")
tst_data = converters.ndarray_to_instances(tst, relation="Test")
trn_data.class_is_last()
tst_data.class_is_last()
# t = time()
if tuning:
opt = tune(train)
else:
opt = default_opt
# print("Time to tune: {} seconds".format(time() - t))
cls = Classifier(classname=classifiers[name.lower()], options=opt)
cls.build_classifier(trn_data)
distr = [cls.distribution_for_instance(inst)[1] for inst in tst_data]
preds = [cls.classify_instance(inst) for inst in tst_data]
jvm.stop()
return preds, distr
import weka.core.jvm as jvm jvm.start() jvm.start(system_cp=True, packages=True) jvm.start(packages="/usr/local/lib/python2.7/dist-packages/weka") jvm.start(max_heap_size="512m") data_dir="CSDMC2010_SPAM/CSDMC2010_SPAM/TRAINING" from weka.classifiers import Classifier cls = Classifier(classname="weka.classifiers.trees.J48") cls.options = ["-C", "0.3"] print(cls.options) jvm.stop()
def evaluate_j48(datasets_path, intermediary_path):
# for examples on how to use this function, refer to
# http://pythonhosted.org/python-weka-wrapper/examples.html#build-classifier-on-dataset-output-predictions
import weka.core.jvm as jvm
from weka.core.converters import Loader
from weka.classifiers import Classifier
from sklearn.metrics import precision_score, accuracy_score, f1_score
from networkx.drawing.nx_agraph import graphviz_layout
jvm.start()
json_results = {
'runs': {
'1': dict()
}
}
try:
for dataset in os.listdir(datasets_path):
dataset_name = dataset.split('.')[0]
json_results['runs']['1'][dataset_name] = dict()
loader = Loader(classname="weka.core.converters.ArffLoader")
y_pred_all = []
y_true_all = []
heights = []
n_nodes = []
for n_fold in it.count():
try:
train_s = loader.load_file(
os.path.join(intermediary_path, '%s_fold_%d_train.arff' % (dataset_name, n_fold)))
val_s = loader.load_file(
os.path.join(intermediary_path, '%s_fold_%d_val.arff' % (dataset_name, n_fold)))
test_s = loader.load_file(
os.path.join(intermediary_path, '%s_fold_%d_test.arff' % (dataset_name, n_fold)))
train_s.relationname = dataset_name
val_s.relationname = dataset_name
test_s.relationname = dataset_name
train_s.class_is_last()
val_s.class_is_last()
test_s.class_is_last()
warnings.warn('WARNING: appending validation set in training set.')
for inst in val_s:
train_s.add_instance(inst)
cls = Classifier(classname="weka.classifiers.trees.J48", options=["-C", "0.25", "-M", "2"])
# cls = Classifier(classname="weka.classifiers.trees.REPTree",
# options=["-M", "2", "-V", "0.001", "-N", "3", "-S", "1", "-L", "-1", "-I", "0.0"])
cls.build_classifier(train_s)
warnings.warn('WARNING: will only work for binary splits!')
graph = cls.graph.encode('ascii')
out = StringIO.StringIO(graph)
G = nx.Graph(nx.nx_pydot.read_dot(out))
# TODO plotting!
# fig = plt.figure(figsize=(40, 30))
# pos = graphviz_layout(G, root='N0', prog='dot')
#
# edgelist = G.edges(data=True)
# nodelist = G.nodes(data=True)
#
# edge_labels = {(x1, x2): v['label'] for x1, x2, v in edgelist}
# node_colors = {node_id: ('#98FB98' if 'shape' in _dict else '#0099FF') for node_id, _dict in nodelist}
# node_colors['N0'] = '#FFFFFF'
# node_colors = node_colors.values()
#
# nx.draw_networkx_nodes(G, pos, node_color=node_colors)
# nx.draw_networkx_edges(G, pos, style='dashed', arrows=False)
# nx.draw_networkx_labels(G, pos, {k: v['label'] for k, v in G.node.iteritems()})
# nx.draw_networkx_edge_labels(G, pos, edge_labels=edge_labels)
# plt.axis('off')
# plt.show()
# exit(0)
# TODO plotting!
heights += [max(map(len, nx.shortest_path(G, source='N0').itervalues()))]
n_nodes += [len(G.node)]
y_test_true = []
y_test_pred = []
# y_train_true = []
# y_train_pred = []
# for index, inst in enumerate(train_s):
# y_train_true += [inst.get_value(inst.class_index)]
# y_train_pred += [cls.classify_instance(inst)]
for index, inst in enumerate(test_s):
y_test_true += [inst.get_value(inst.class_index)]
y_test_pred += [cls.classify_instance(inst)]
y_true_all += y_test_true
y_pred_all += y_test_pred
except Exception as e:
break
json_results['runs']['1'][dataset_name] = {
'confusion_matrix': confusion_matrix(y_true_all, y_pred_all).tolist(),
'height': heights,
'n_nodes': n_nodes,
}
# interprets
json_results = json.load(open('/home/henry/Desktop/j48/j48_results.json', 'r'))
n_runs = len(json_results['runs'].keys())
some_run = json_results['runs'].keys()[0]
n_datasets = len(json_results['runs'][some_run].keys())
df = pd.DataFrame(
columns=['run', 'dataset', 'test_acc', 'height mean', 'height std', 'n_nodes mean', 'n_nodes std'],
index=np.arange(n_runs * n_datasets),
dtype=np.float32
)
df['dataset'] = df['dataset'].astype(np.object)
count_row = 0
for n_run, run in json_results['runs'].iteritems():
for dataset_name, dataset in run.iteritems():
conf_matrix = np.array(dataset['confusion_matrix'], dtype=np.float32)
test_acc = np.diag(conf_matrix).sum() / conf_matrix.sum()
height_mean = np.mean(dataset['height'])
height_std = np.std(dataset['height'])
n_nodes_mean = np.mean(dataset['n_nodes'])
n_nodes_std = np.std(dataset['n_nodes'])
df.loc[count_row] = [
int(n_run), str(dataset_name), float(test_acc),
float(height_mean), float(height_std), float(n_nodes_mean), float(n_nodes_std)
]
count_row += 1
print df
json.dump(json_results, open('j48_results.json', 'w'), indent=2)
df.to_csv('j48_results.csv', sep=',', quotechar='\"', index=False)
finally:
jvm.stop()
def runner(self, cdat, heap_size = 16384, seed = None, verbose = True):
self.set_status(Pipeline.RUNNING)
self.logs.append('Initializing Pipeline')
para = self.config
self.logs.append('Reading Pipeline Configuration')
head = ''
name = get_rand_uuid_str()
self.logs.append('Reading Input File')
for i, stage in enumerate(self.stages):
if stage.code in ('dat.fle', 'prp.bgc', 'prp.nrm', 'prp.pmc', 'prp.sum'):
self.stages[i].status = Pipeline.RUNNING
if stage.code == 'dat.fle':
head = os.path.abspath(stage.value.path)
name, _ = os.path.splitext(stage.value.name)
self.logs.append('Parsing to ARFF')
path = os.path.join(head, '{name}.arff'.format(name = name))
# This bug, I don't know why, using Config.schema instead.
# cdat.toARFF(path, express_config = para.Preprocess.schema, verbose = verbose)
for i, stage in enumerate(self.stages):
if stage.code in ('dat.fle', 'prp.bgc', 'prp.nrm', 'prp.pmc', 'prp.sum'):
self.stages[i].status = Pipeline.COMPLETE
self.logs.append('Saved ARFF at {path}'.format(path = path))
self.logs.append('Splitting to Training and Testing Sets')
JVM.start(max_heap_size = '{size}m'.format(size = heap_size))
load = Loader(classname = 'weka.core.converters.ArffLoader')
# data = load.load_file(path)
# save = Saver(classname = 'weka.core.converters.ArffSaver')
data = load.load_file(os.path.join(head, 'iris.arff')) # For Debugging Purposes Only
data.class_is_last() # For Debugging Purposes Only
# data.class_index = cdat.iclss
for i, stage in enumerate(self.stages):
if stage.code == 'prp.kcv':
self.stages[i].status = Pipeline.RUNNING
self.logs.append('Splitting Training Set')
# TODO - Check if this seed is worth it.
seed = assign_if_none(seed, random.randint(0, 1000))
opts = ['-S', str(seed), '-N', str(para.Preprocess.FOLDS)]
wobj = Filter(classname = 'weka.filters.supervised.instance.StratifiedRemoveFolds', options = opts + ['-V'])
wobj.inputformat(data)
tran = wobj.filter(data)
self.logs.append('Splitting Testing Set')
wobj.options = opts
test = wobj.filter(data)
for i, stage in enumerate(self.stages):
if stage.code == 'prp.kcv':
self.stages[i].status = Pipeline.COMPLETE
self.logs.append('Performing Feature Selection')
feat = [ ]
for comb in para.FEATURE_SELECTION:
if comb.USE:
for i, stage in enumerate(self.stages):
if stage.code == 'ats':
search = stage.value.search.name
evaluator = stage.value.evaluator.name
if search == comb.Search.NAME and evaluator == comb.Evaluator.NAME:
self.stages[i].status = Pipeline.RUNNING
srch = ASSearch(classname = 'weka.attributeSelection.{classname}'.format(
classname = comb.Search.NAME,
options = assign_if_none(comb.Search.OPTIONS, [ ])
))
ewal = ASEvaluation(classname = 'weka.attributeSelection.{classname}'.format(
classname = comb.Evaluator.NAME,
options = assign_if_none(comb.Evaluator.OPTIONS, [ ])
))
attr = AttributeSelection()
attr.search(srch)
attr.evaluator(ewal)
attr.select_attributes(tran)
meta = addict.Dict()
meta.search = comb.Search.NAME
meta.evaluator = comb.Evaluator.NAME
meta.features = [tran.attribute(index).name for index in attr.selected_attributes]
feat.append(meta)
for i, stage in enumerate(self.stages):
if stage.code == 'ats':
search = stage.value.search.name
evaluator = stage.value.evaluator.name
if search == comb.Search.NAME and evaluator == comb.Evaluator.NAME:
self.stages[i].status = Pipeline.COMPLETE
models = [ ]
for model in para.MODEL:
if model.USE:
summary = addict.Dict()
self.logs.append('Modelling {model}'.format(model = model.LABEL))
summary.label = model.LABEL
summary.name = model.NAME
summary.options = assign_if_none(model.OPTIONS, [ ])
for i, stage in enumerate(self.stages):
if stage.code == 'lrn' and stage.value.name == model.NAME:
self.stages[i].status = Pipeline.RUNNING
for i, instance in enumerate(data):
iclass = list(range(instance.num_classes))
options = assign_if_none(model.OPTIONS, [ ])
classifier = Classifier(classname = 'weka.classifiers.{classname}'.format(classname = model.NAME), options = options)
classifier.build_classifier(tran)
serializer.write(os.path.join(head, '{name}.{classname}.model'.format(
name = name,
classname = model.NAME
)), classifier)
self.logs.append('Testing model {model}'.format(model = model.LABEL))
evaluation = Evaluation(tran)
evaluation.test_model(classifier, test)
summary.summary = evaluation.summary()
frame = pd.DataFrame(data = evaluation.confusion_matrix)
axes = sns.heatmap(frame, cbar = False, annot = True)
b64str = get_b64_plot(axes)
summary.confusion_matrix = addict.Dict({
'value': evaluation.confusion_matrix.tolist(),
'plot': b64str
})
self.logs.append('Plotting Learning Curve for {model}'.format(model = model.LABEL))
buffer = io.BytesIO()
plot_classifier_errors(evaluation.predictions, tran, test, outfile = buffer, wait = False)
b64str = buffer_to_b64(buffer)
summary.learning_curve = b64str
buffer = io.BytesIO()
plot_roc(evaluation, class_index = iclass, outfile = buffer, wait = False)
b64str = buffer_to_b64(buffer)
summary.roc_curve = b64str
buffer = io.BytesIO()
plot_prc(evaluation, class_index = iclass, outfile = buffer, wait = False)
b64str = buffer_to_b64(buffer)
summary.prc_curve = b64str
if classifier.graph:
summary.graph = classifier.graph
for i, instance in enumerate(test):
prediction = classifier.classify_instance(instance)
for i, stage in enumerate(self.stages):
if stage.code == 'lrn' and stage.value.name == model.NAME:
self.stages[i].status = Pipeline.COMPLETE
models.append(summary)
self.gist.models = models
JVM.stop()
JSON.write(os.path.join(head, '{name}.cgist'.format(name = name)), self.gist)
self.logs.append('Pipeline Complete')
self.set_status(Pipeline.COMPLETE)
def stop(self):
jvm.stop()
def __del__(self):
#stop JVM
print "jvm stop"
jvm.stop()
def main():
"""
Specify list of files to multi_file_curve, classify, and export results as csv.
"""
try:
# start up a JVM to run weka on
jvm.start(max_heap_size='512m')
# classifiers
naive_bayes = Classifier(classname='weka.classifiers.bayes.NaiveBayes')
zero_r = Classifier(classname='weka.classifiers.rules.ZeroR')
bayes_net = Classifier(classname='weka.classifiers.bayes.BayesNet',
options=['-D', '-Q', 'weka.classifiers.bayes.net.search.local.K2',
'--', '-P', '1', '-S', 'BAYES', '-E',
'weka.classifiers.bayes.net.estimate.SimpleEstimator',
'--', '-A', '0.5'])
d_tree = Classifier(classname='weka.classifiers.trees.J48',
options=['-C', '0.25', '-M', '2'])
file_list = [
'data/aggregated_data.csv'
]
name_list = [
'multi-class'
]
# classify and export
percent_range = range(1, 101, 1)
zero_r_curves = multi_file_curve(classifier=zero_r, classifier_name='zero_r',
name_list=name_list, in_file_list=file_list,
percentages=percent_range)
naive_bayes_curves = multi_file_curve(classifier=naive_bayes, classifier_name='naive_bayes',
name_list=name_list, in_file_list=file_list,
percentages=percent_range)
bayes_net_curves = multi_file_curve(classifier=bayes_net, classifier_name='bayes_net',
name_list=name_list, in_file_list=file_list,
percentages=percent_range)
d_tree_curves = multi_file_curve(classifier=d_tree, classifier_name='d_tree',
name_list=name_list, in_file_list=file_list,
percentages=percent_range)
# export
csv_header = [
'approach',
'classifier',
'percentage_dataset_training',
'accuracy',
'f_measure'
]
with open('analysis/learning_curves.csv', 'wb') as f:
csv_writer = csv.writer(f, delimiter=',')
csv_writer.writerow(csv_header)
for r in zero_r_curves:
csv_writer.writerow(r)
for r in naive_bayes_curves:
csv_writer.writerow(r)
for r in bayes_net_curves:
csv_writer.writerow(r)
for r in d_tree_curves:
csv_writer.writerow(r)
except RuntimeError:
typ, value, tb = sys.exc_info()
print typ
print value
print tb
traceback.print_exc()
pdb.post_mortem(tb)
finally:
jvm.stop()
def run_classifier(path, prot, sel, cols, prot_vals, beta):
DIs = dict()
jvm.start()
for i in range(len(cols)-1):
loader = Loader(classname="weka.core.converters.CSVLoader")
data = loader.load_file(path)
# remove selected attribute from the data
# NOTE: options are ONE indexed, not ZERO indexed
remove = Filter(classname="weka.filters.unsupervised.attribute.Remove", \
options=["-R", str(sel[2]+1)])
remove.inputformat(data)
data = remove.filter(data)
# if running for only one attribue, remove all others (except protected)
if i > 0:
for j in range(1, prot[2]+1):
if i != j:
remove = Filter(classname="weka.filters.unsupervised.attribute.Remove", \
options=["-R", ("1" if i>j else "2")])
remove.inputformat(data)
data = remove.filter(data)
# set prot attribute as Class attribute
data.class_is_last()
# run classifier
cls = Classifier(classname="weka.classifiers.bayes.NaiveBayes")
cls.build_classifier(data)
# count the number of each combination
pos_and_pred = float(0.0)
pos_and_not_pred = float(0.0)
neg_and_pred = float(0.0)
neg_and_not_pred = float(0.0)
for ind, inst in enumerate(data):
if cls.classify_instance(inst):
if prot_vals[ind] == prot[1]:
pos_and_pred += 1
else:
neg_and_pred += 1
else:
if prot_vals[ind] == prot[1]:
pos_and_not_pred += 1
else:
neg_and_not_pred += 1
# calculate DI
BER = ((pos_and_not_pred / (pos_and_pred + pos_and_not_pred)) + \
(neg_and_pred / (neg_and_pred + neg_and_not_pred))) * 0.5
if BER > 0.5:
BER = 1 - BER
DI = 1 - ((1 - 2 * BER) / (beta + 1 - 2 * BER))
if i == 0: # consider changing this to a 'code word' instead of 'all'
DIs["all"] = DI
else:
DIs[cols[i-1]] = DI
jvm.stop()
return DIs
def main():
"""
Runs a filter from the command-line. Calls JVM start/stop automatically.
Use -h to see all options.
"""
parser = argparse.ArgumentParser(
description='Executes a filter from the command-line. Calls JVM start/stop automatically.')
parser.add_argument("-j", metavar="classpath", dest="classpath", help="additional classpath, jars/directories")
parser.add_argument("-X", metavar="heap", dest="heap", help="max heap size for jvm, e.g., 512m")
parser.add_argument("-i", metavar="input1", dest="input1", required=True, help="input file 1")
parser.add_argument("-o", metavar="output1", dest="output1", required=True, help="output file 1")
parser.add_argument("-r", metavar="input2", dest="input2", help="input file 2")
parser.add_argument("-s", metavar="output2", dest="output2", help="output file 2")
parser.add_argument("-c", metavar="classindex", default="-1", dest="classindex",
help="1-based class attribute index")
parser.add_argument("filter", help="filter classname, e.g., weka.filters.AllFilter")
parser.add_argument("option", nargs=argparse.REMAINDER, help="additional filter options")
parsed = parser.parse_args()
if parsed.input2 is None and parsed.output2 is not None:
raise Exception("No second input file provided ('-r ...')!")
jars = []
if parsed.classpath is not None:
jars = parsed.classpath.split(os.pathsep)
params = []
if parsed.input1 is not None:
params.extend(["-i", parsed.input1])
if parsed.output1 is not None:
params.extend(["-o", parsed.output1])
if parsed.input2 is not None:
params.extend(["-r", parsed.input2])
if parsed.output2 is not None:
params.extend(["-s", parsed.output2])
if parsed.classindex is not None:
params.extend(["-c", parsed.classindex])
jvm.start(jars, max_heap_size=parsed.heap, packages=True)
logger.debug("Commandline: " + join_options(sys.argv[1:]))
try:
flter = Filter(parsed.filter)
if len(parsed.option) > 0:
flter.options = parsed.option
loader = Loader(classname="weka.core.converters.ArffLoader")
in1 = loader.load_file(parsed.input1)
cls = parsed.classindex
if str(parsed.classindex) == "first":
cls = "0"
if str(parsed.classindex) == "last":
cls = str(in1.num_attributes - 1)
in1.class_index = int(cls)
flter.inputformat(in1)
out1 = flter.filter(in1)
saver = Saver(classname="weka.core.converters.ArffSaver")
saver.save_file(out1, parsed.output1)
if parsed.input2 is not None:
in2 = loader.load_file(parsed.input2)
in2.class_index = int(cls)
out2 = flter.filter(in2)
saver.save_file(out2, parsed.output2)
except Exception as e:
print(e)
finally:
jvm.stop()
def testing():
logging.disable("weka")
print "PROSES KLASIFIKASI\n------------------"
jvm.start()
pruning = 0
while pruning < 2:
persen_train = 0
while persen_train < 4:
fitur_hapus = 15
while fitur_hapus >= 0:
list_akurasi = []
list_recall = []
list_presisi = []
list_fmeasure = []
list_roc = []
count = 0
nama = "hasilTest/"
if(pruning == 0):
nama += "unpruning"
if(persen_train == 0):
nama += "40"
elif(persen_train == 1):
nama += "50"
elif(persen_train == 2):
nama += "60"
else:
nama += "70"
else:
nama += "pruning"
if(persen_train == 0):
nama += "40"
elif(persen_train == 1):
nama += "50"
elif(persen_train == 2):
nama += "60"
else:
nama += "70"
if(fitur_hapus > 0):
nama += "removeF" + str(fitur_hapus) + ".txt"
else:
nama += "normal.txt"
f = open(nama, "w")
if(pruning == 0):
nama = "unpruning"
print "Tanpa Pruning"
f.write("Hasil Decision Tree C4.5 tanpa Pruning (unpruning)\n")
if(persen_train == 0):
nama += "40"
f.write("Dengan Training Set sebesar 40%\n")
elif(persen_train == 1):
nama += "50"
f.write("Dengan Training Set sebesar 50%\n")
elif(persen_train == 2):
nama += "60"
f.write("Dengan Training Set sebesar 60%\n")
else:
nama += "70"
f.write("Dengan Training Set sebesar 70%\n")
else:
nama = "pruning"
print "Dengan Pruning"
f.write("Hasil Decision Tree C4.5 Pruning\n")
if(persen_train == 0):
nama += "40"
f.write("Dengan Training Set sebesar 40%\n")
elif(persen_train == 1):
nama += "50"
f.write("Dengan Training Set sebesar 50%\n")
elif(persen_train == 2):
nama += "60"
f.write("Dengan Training Set sebesar 60%\n")
else:
nama += "70"
f.write("Dengan Training Set sebesar 70%\n")
if(fitur_hapus > 0):
f.write("Menggunakan remove pada fitur " + str(fitur_hapus) + "\n\n")
else:
f.write("\n")
f.write("No. Akurasi Recall Presisi F-Measure ROC\n")
if persen_train == 0:
print "40% Data Training"
elif persen_train == 1:
print "50% Data Training"
elif persen_train == 2:
print "60% Data Training"
else:
print "70% Data Training"
print "Fitur yang dihapus:", fitur_hapus
print "\nNo.\tAkurasi\tRecall\tPresisi\tF-Measure\tROC"
while count < 100:
loader = Loader(classname = "weka.core.converters.ArffLoader")
data = loader.load_file("hasil.arff")
data.class_is_last()
if(fitur_hapus > 0):
remove = Filter(classname = "weka.filters.unsupervised.attribute.Remove", options = ["-R", str(fitur_hapus)])
remove.inputformat(data)
data_baru = remove.filter(data)
data_baru.class_is_last()
else:
data_baru = loader.load_file("hasil.arff")
data_baru.class_is_last()
filter = Filter(classname = "weka.filters.unsupervised.instance.Randomize", options = ["-S", str(int(time.time()))])
filter.inputformat(data_baru)
data_random = filter.filter(data_baru)
data_random.class_is_last()
if(pruning == 0):
classifier = Classifier(classname = "weka.classifiers.trees.J48", options = ["-U"])
else:
classifier = Classifier(classname = "weka.classifiers.trees.J48", options = ["-C", "0.25"])
evaluation = Evaluation(data_random)
if(persen_train == 0):
evaluation.evaluate_train_test_split(classifier, data_random, percentage = 40)
elif(persen_train == 1):
evaluation.evaluate_train_test_split(classifier, data_random, percentage = 50)
elif(persen_train == 2):
evaluation.evaluate_train_test_split(classifier, data_random, percentage = 60)
else:
evaluation.evaluate_train_test_split(classifier, data_random, percentage = 70)
f.write(str(count + 1) + str( ". " ) + str(evaluation.weighted_true_positive_rate) + str( " " ) + str(evaluation.weighted_recall) + str( " " ) + str(evaluation.weighted_precision) + str( " " ) + str(evaluation.weighted_f_measure) + str( " " ) + str(evaluation.weighted_area_under_roc) + "\n")
print count + 1, evaluation.weighted_true_positive_rate, evaluation.weighted_recall, evaluation.weighted_precision, evaluation.weighted_f_measure, evaluation.weighted_area_under_roc
list_akurasi.append(evaluation.weighted_true_positive_rate)
list_recall.append(evaluation.weighted_recall)
list_presisi.append(evaluation.weighted_precision)
list_fmeasure.append(evaluation.weighted_f_measure)
list_roc.append(evaluation.weighted_area_under_roc)
count += 1
time.sleep(1)
list_akurasi.sort()
list_recall.sort()
list_presisi.sort()
list_fmeasure.sort()
list_roc.sort()
f.write( "" + "\n")
f.write( "Rata-Rata" + "\n")
f.write( "Akurasi:" + str(sum(list_akurasi) / 100.0) + "\n")
f.write( "Recall:" + str(sum(list_recall) / 100.0) + "\n")
f.write( "Presisi:" + str(sum(list_presisi) / 100.0) + "\n")
f.write( "F-Measure:" + str(sum(list_fmeasure) / 100.0) + "\n")
f.write( "ROC:" + str(sum(list_roc) / 100.0) + "\n")
f.write( "" + "\n")
f.write( "Max" + "\n")
f.write( "Akurasi:" + str(list_akurasi[-1] ) + "\n")
f.write( "Recall:" + str(list_recall[-1] ) + "\n")
f.write( "Presisi:" + str(list_presisi[-1] ) + "\n")
f.write( "F-Measure:" + str(list_fmeasure[-1] ) + "\n")
f.write( "ROC:" + str(list_roc[-1] ) + "\n")
f.write( "" + "\n")
f.write( "Min" + "\n")
f.write( "Akurasi:" + str(list_akurasi[0] ) + "\n")
f.write( "Recall:" + str(list_recall[0] ) + "\n")
f.write( "Presisi:" + str(list_presisi[0] ) + "\n")
f.write( "F-Measure:" + str(list_fmeasure[0] ) + "\n")
f.write( "ROC:" + str(list_roc[0] ) + "\n")
f.write( "" + "\n")
print ""
print "Rata-Rata"
print "Akurasi:", sum(list_akurasi) / 100.0
print "Recall:", sum(list_recall) / 100.0
print "Presisi:", sum(list_presisi) / 100.0
print "F-Measure:", sum(list_fmeasure) / 100.0
print "ROC:", sum(list_roc) / 100.0
print ""
print "Max"
print "Akurasi:", list_akurasi[-1]
print "Recall:", list_recall[-1]
print "Presisi:", list_presisi[-1]
print "F-Measure:", list_fmeasure[-1]
print "ROC:", list_roc[-1]
print ""
print "Min"
print "Akurasi:", list_akurasi[0]
print "Recall:", list_recall[0]
print "Presisi:", list_presisi[0]
print "F-Measure:", list_fmeasure[0]
print "ROC:", list_roc[0]
print ""
f.close()
fitur_hapus -= 1
persen_train += 1
pruning += 1
jvm.stop()
