def dl_all_db(db_dir=None):
if not db_dir:
db_dir = _gen_default_dbdir()
dbs = wfdb.get_dbs()
for db in dbs:
db_name = db[0]
print('downloading db: ', db[0], ' ', db[1])
wfdb.dl_database(db_name + '/', dl_dir=os.path.join(db_dir, db_name))
def getDatasetInfo():
dbs = wfdb.get_dbs()
dataset_keys = []
dataset_names = []
for i in range(0, len(dbs)):
dataset_keys.append(str(dbs[i][0]))
dataset_names.append(str(dbs[i][1]))
total_info = [dataset_keys, dataset_names]
return total_info
# -*- coding: utf-8 -*-
#%% Data initialization
import os
import numpy as np
# import PhysioNet ecg data package
import wfdb
# list of available datasets
dbs = wfdb.get_dbs()
#display(dbs)
# we choose svdb
svdb_dir = os.path.join(os.getcwd(), 'svdb_dir')
#wfdb.dl_database('svdb', dl_dir=svdb_dir)
# Display the downloaded content
svdb_in_files = [
os.path.splitext(f)[0] for f in os.listdir(svdb_dir) if f.endswith('.dat')
]
print(svdb_in_files)
time_window = 48
all_beats = []
all_annotations = []
for in_file in svdb_in_files:
print('...processing...' + in_file + '...file')
signal, fields = wfdb.rdsamp(os.path.join(svdb_dir, in_file), channels=[0])
annotations = wfdb.rdann(os.path.join(svdb_dir, in_file), 'atr')
import os
import wfdb
import matplotlib.pyplot as plt
import numpy as np
import pandas as pd
import tensorflow as tf
from tensorflow import keras
from tensorflow.keras import layers
from sklearn.metrics import confusion_matrix
import seaborn as sn
os.chdir('C:\\Users\\Jerry\\Desktop\\Jerry\\projects\\heartbeat_python')
#%% download all the files
test = wfdb.get_dbs()
wfdb.get_record_list('mitdb')
wfdb.dl_database(
'mitdb',
'C:\\Users\\Jerry\\Desktop\\Jerry\\projects\\Heartbeat Python\\data')
#%% building a loop to read in data and annotations then cutting the ECG into heartbeats
def simple_plot(x, alpha=1, grid=True):
plt.plot(np.arange(0, len(x)), x, alpha=alpha)
if grid:
plt.grid(True)
sample = wfdb.rdsamp('data\\101')[0][:, 0] # read in the record
annotation = wfdb.rdann('data\\101',
def getDBList():
# Retreive a list of available databases in Physionet
dbs = wfdb.get_dbs()
return dbs