def weight_list_serial_workflow(vis_list,
model_imagelist,
gcfcf=None,
weighting='uniform',
**kwargs):
""" Weight the visibility data
This is done collectively so the weights are summed over all vis_lists and then
corrected
:param vis_list:
:param model_imagelist: Model required to determine weighting parameters
:param weighting: Type of weighting
:param kwargs: Parameters for functions in graphs
:return: List of vis_graphs
"""
centre = len(model_imagelist) // 2
if gcfcf is None:
gcfcf = [create_pswf_convolutionfunction(model_imagelist[centre])]
def grid_wt(vis, model, g):
if vis is not None:
if model is not None:
griddata = create_griddata_from_image(model)
griddata = grid_weight_to_griddata(vis, griddata, g[0][1])
return griddata
else:
return None
else:
return None
weight_list = [
grid_wt(vis_list[i], model_imagelist[i], gcfcf)
for i in range(len(vis_list))
]
merged_weight_grid = griddata_merge_weights(weight_list)
def re_weight(vis, model, gd, g):
if gd is not None:
if vis is not None:
# Ensure that the griddata has the right axes so that the convolution
# function mapping works
agd = create_griddata_from_image(model)
agd.data = gd[0].data
vis = griddata_reweight(vis, agd, g[0][1])
return vis
else:
return None
else:
return vis
return [
re_weight(v, model_imagelist[i], merged_weight_grid, gcfcf)
for i, v in enumerate(vis_list)
]
def continuum_imaging_list_serial_workflow(vis_list, model_imagelist, context, gcfcf=None,
vis_slices=1, facets=1, **kwargs):
""" Create graph for the continuum imaging pipeline.
Same as ICAL but with no selfcal.
:param vis_list:
:param model_imagelist:
:param context: Imaging context
:param kwargs: Parameters for functions in components
:return:
"""
if gcfcf is None:
gcfcf = [create_pswf_convolutionfunction(model_imagelist[0])]
psf_imagelist = invert_list_serial_workflow(vis_list, model_imagelist, context=context, dopsf=True,
vis_slices=vis_slices, facets=facets, gcfcf=gcfcf, **kwargs)
residual_imagelist = residual_list_serial_workflow(vis_list, model_imagelist, context=context, gcfcf=gcfcf,
vis_slices=vis_slices, facets=facets, **kwargs)
deconvolve_model_imagelist, _ = deconvolve_list_serial_workflow(residual_imagelist, psf_imagelist,
model_imagelist,
prefix='cycle 0',
**kwargs)
nmajor = get_parameter(kwargs, "nmajor", 5)
if nmajor > 1:
for cycle in range(nmajor):
prefix = "cycle %d" % (cycle + 1)
residual_imagelist = residual_list_serial_workflow(vis_list, deconvolve_model_imagelist,
context=context, vis_slices=vis_slices,
facets=facets,
gcfcf=gcfcf, **kwargs)
deconvolve_model_imagelist, _ = deconvolve_list_serial_workflow(residual_imagelist, psf_imagelist,
deconvolve_model_imagelist,
prefix=prefix,
**kwargs)
residual_imagelist = residual_list_serial_workflow(vis_list, deconvolve_model_imagelist, context=context,
vis_slices=vis_slices, facets=facets, gcfcf=gcfcf, **kwargs)
restore_imagelist = restore_list_serial_workflow(deconvolve_model_imagelist, psf_imagelist, residual_imagelist)
return (deconvolve_model_imagelist, residual_imagelist, restore_imagelist)
def predict_list_serial_workflow(vis_list, model_imagelist, context, vis_slices=1, facets=1,
gcfcf=None, **kwargs):
"""Predict, iterating over both the scattered vis_list and image
The visibility and image are scattered, the visibility is predicted on each part, and then the
parts are assembled.
:param vis_list:
:param model_imagelist: Model used to determine image parameters
:param vis_slices: Number of vis slices (w stack or timeslice)
:param facets: Number of facets (per axis)
:param context: Type of processing e.g. 2d, wstack, timeslice or facets
:param gcfcg: tuple containing grid correction and convolution function
:param kwargs: Parameters for functions in components
:return: List of vis_lists
"""
assert len(vis_list) == len(model_imagelist), "Model must be the same length as the vis_list"
# Predict_2d does not clear the vis so we have to do it here.
vis_list = zero_list_serial_workflow(vis_list)
c = imaging_context(context)
vis_iter = c['vis_iterator']
predict = c['predict']
if facets % 2 == 0 or facets == 1:
actual_number_facets = facets
else:
actual_number_facets = facets - 1
def predict_ignore_none(vis, model, g):
if vis is not None:
assert isinstance(vis, Visibility), vis
assert isinstance(model, Image), model
return predict(vis, model, context=context, gcfcf=g, **kwargs)
else:
return None
if gcfcf is None:
gcfcf = [create_pswf_convolutionfunction(m) for m in model_imagelist]
# Loop over all frequency windows
if facets == 1:
image_results_list = list()
for ivis, vis_list in enumerate(vis_list):
if len(gcfcf) > 1:
g = gcfcf[ivis]
else:
g = gcfcf[0]
# Create the graph to divide an image into facets. This is by reference.
# Create the graph to divide the visibility into slices. This is by copy.
sub_vis_lists = visibility_scatter(vis_list, vis_iter, vis_slices)
image_vis_lists = list()
# Loop over sub visibility
for sub_vis_list in sub_vis_lists:
# Predict visibility for this sub-visibility from this image
image_vis_list = predict_ignore_none(sub_vis_list, model_imagelist[ivis], g)
# Sum all sub-visibilities
image_vis_lists.append(image_vis_list)
image_results_list.append(visibility_gather(image_vis_lists, vis_list, vis_iter))
return image_results_list
else:
image_results_list_list = list()
for ivis, vis_list in enumerate(vis_list):
# Create the graph to divide an image into facets. This is by reference.
facet_lists = image_scatter_facets(model_imagelist[ivis], facets=facets)
facet_vis_lists = list()
sub_vis_lists = visibility_scatter(vis_list, vis_iter, vis_slices)
# Loop over sub visibility
for sub_vis_list in sub_vis_lists:
facet_vis_results = list()
# Loop over facets
for facet_list in facet_lists:
# Predict visibility for this subvisibility from this facet
facet_vis_list = predict_ignore_none(sub_vis_list, facet_list,
None)
facet_vis_results.append(facet_vis_list)
# Sum the current sub-visibility over all facets
facet_vis_lists.append(sum_predict_results(facet_vis_results))
# Sum all sub-visibilties
image_results_list_list.append(visibility_gather(facet_vis_lists, vis_list, vis_iter))
return image_results_list_list
def invert_list_serial_workflow(vis_list, template_model_imagelist, dopsf=False, normalize=True,
facets=1, vis_slices=1, context='2d', gcfcf=None, **kwargs):
""" Sum results from invert, iterating over the scattered image and vis_list
:param vis_list:
:param template_model_imagelist: Model used to determine image parameters
:param dopsf: Make the PSF instead of the dirty image
:param facets: Number of facets
:param normalize: Normalize by sumwt
:param vis_slices: Number of slices
:param context: Imaging context
:param gcfcg: tuple containing grid correction and convolution function
:param kwargs: Parameters for functions in components
:return: List of (image, sumwt) tuple
"""
if not isinstance(template_model_imagelist, collections.Iterable):
template_model_imagelist = [template_model_imagelist]
c = imaging_context(context)
vis_iter = c['vis_iterator']
invert = c['invert']
def gather_image_iteration_results(results, template_model):
result = create_empty_image_like(template_model)
i = 0
sumwt = numpy.zeros([template_model.nchan, template_model.npol])
for dpatch in image_scatter_facets(result, facets=facets):
assert i < len(results), "Too few results in gather_image_iteration_results"
if results[i] is not None:
assert len(results[i]) == 2, results[i]
dpatch.data[...] = results[i][0].data[...]
sumwt += results[i][1]
i += 1
return result, sumwt
def invert_ignore_none(vis, model, g):
if vis is not None:
return invert(vis, model, context=context, dopsf=dopsf, normalize=normalize,
gcfcf=g, **kwargs)
else:
return create_empty_image_like(model), 0.0
# If we are doing facets, we need to create the gcf for each image
if gcfcf is None and facets == 1:
gcfcf = [create_pswf_convolutionfunction(template_model_imagelist[0])]
# Loop over all vis_lists independently
results_vislist = list()
if facets == 1:
for ivis, vis_list in enumerate(vis_list):
if len(gcfcf) > 1:
g = gcfcf[ivis]
else:
g = gcfcf[0]
# Create the graph to divide the visibility into slices. This is by copy.
sub_vis_lists = visibility_scatter(vis_list, vis_iter, vis_slices=vis_slices)
# Iterate within each vis_list
vis_results = list()
for sub_vis_list in sub_vis_lists:
vis_results.append(invert_ignore_none(sub_vis_list, template_model_imagelist[ivis],
g))
results_vislist.append(sum_invert_results(vis_results))
return results_vislist
else:
for ivis, vis_list in enumerate(vis_list):
# Create the graph to divide an image into facets. This is by reference.
facet_lists = image_scatter_facets(template_model_imagelist[
ivis],
facets=facets)
# Create the graph to divide the visibility into slices. This is by copy.
sub_vis_lists = visibility_scatter(vis_list, vis_iter, vis_slices=vis_slices)
# Iterate within each vis_list
vis_results = list()
for sub_vis_list in sub_vis_lists:
facet_vis_results = list()
for facet_list in facet_lists:
facet_vis_results.append(invert_ignore_none(sub_vis_list, facet_list,
None))
vis_results.append(gather_image_iteration_results(facet_vis_results,
template_model_imagelist[ivis]))
results_vislist.append(sum_invert_results(vis_results))
return results_vislist
def ical_list_serial_workflow(vis_list, model_imagelist, context, vis_slices=1, facets=1,
gcfcf=None, calibration_context='TG', do_selfcal=True, **kwargs):
"""Run ICAL pipeline
:param vis_list:
:param model_imagelist:
:param context: imaging context e.g. '2d'
:param calibration_context: Sequence of calibration steps e.g. TGB
:param do_selfcal: Do the selfcalibration?
:param kwargs: Parameters for functions in components
:return:
"""
gt_list = list()
if gcfcf is None:
gcfcf = [create_pswf_convolutionfunction(model_imagelist[0])]
psf_imagelist = invert_list_serial_workflow(vis_list, model_imagelist, dopsf=True, context=context,
vis_slices=vis_slices, facets=facets, gcgcf=gcfcf, **kwargs)
model_vislist = [copy_visibility(v, zero=True) for v in vis_list]
if do_selfcal:
cal_vis_list = [copy_visibility(v) for v in vis_list]
else:
cal_vis_list = vis_list
if do_selfcal:
# Make the predicted visibilities, selfcalibrate against it correcting the gains, then
# form the residual visibility, then make the residual image
model_vislist = predict_list_serial_workflow(model_vislist, model_imagelist,
context=context, vis_slices=vis_slices, facets=facets,
gcgcf=gcfcf, **kwargs)
cal_vis_list, gt_list = calibrate_list_serial_workflow(cal_vis_list, model_vislist,
calibration_context=calibration_context, **kwargs)
residual_vislist = subtract_list_serial_workflow(cal_vis_list, model_vislist)
residual_imagelist = invert_list_serial_workflow(residual_vislist, model_imagelist,
context=context, dopsf=False,
vis_slices=vis_slices, facets=facets, gcgcf=gcfcf,
iteration=0, **kwargs)
else:
# If we are not selfcalibrating it's much easier and we can avoid an unnecessary round of gather/scatter
# for visibility partitioning such as timeslices and wstack.
residual_imagelist = residual_list_serial_workflow(cal_vis_list, model_imagelist, context=context,
vis_slices=vis_slices, facets=facets, gcgcf=gcfcf,
**kwargs)
deconvolve_model_imagelist, _ = deconvolve_list_serial_workflow(residual_imagelist, psf_imagelist,
model_imagelist,
prefix='cycle 0', **kwargs)
nmajor = get_parameter(kwargs, "nmajor", 5)
if nmajor > 1:
for cycle in range(nmajor):
if do_selfcal:
model_vislist = predict_list_serial_workflow(model_vislist, deconvolve_model_imagelist,
context=context, vis_slices=vis_slices, facets=facets,
gcgcf=gcfcf, **kwargs)
cal_vis_list = [copy_visibility(v) for v in vis_list]
cal_vis_list, gt_list = calibrate_list_serial_workflow(cal_vis_list, model_vislist,
calibration_context=calibration_context,
iteration=cycle, **kwargs)
residual_vislist = subtract_list_serial_workflow(cal_vis_list, model_vislist)
residual_imagelist = invert_list_serial_workflow(residual_vislist, model_imagelist,
context=context,
vis_slices=vis_slices, facets=facets,
gcgcf=gcfcf, **kwargs)
else:
residual_imagelist = residual_list_serial_workflow(cal_vis_list, deconvolve_model_imagelist,
context=context,
vis_slices=vis_slices, facets=facets,
gcgcf=gcfcf,
**kwargs)
prefix = "cycle %d" % (cycle + 1)
deconvolve_model_imagelist, _ = deconvolve_list_serial_workflow(residual_imagelist, psf_imagelist,
deconvolve_model_imagelist,
prefix=prefix,
**kwargs)
residual_imagelist = residual_list_serial_workflow(cal_vis_list, deconvolve_model_imagelist, context=context,
vis_slices=vis_slices, facets=facets, gcgcf=gcfcf, **kwargs)
restore_imagelist = restore_list_serial_workflow(deconvolve_model_imagelist, psf_imagelist, residual_imagelist)
return deconvolve_model_imagelist, residual_imagelist, restore_imagelist, gt_list