#!/usr/bin/env python3
import sys
import ws2016 as ws
from argparse import ArgumentParser
from random import randint as rand
game=ArgumentParser()
game.add_argument("Aufgabe5B.py", rand(1:10))
args=parser.parse_args()
print(args)
if len(sys.argv) > 1:
with open(sys.argv[1], "rb") as f:
data = ws.parse_fasta(f)
print("Id\tGC%")
for index, seq in enumerate(data):
print("{0}\t{1:.2f}".format(seq['id'].decode(), ws.get_gc_content(data, index)))
else:
print("Run fasta_parser.py <filename>", file=sys.stderr)
print(ws.__file__)
import argparse
import ws2016 as ws
parser = argparse.ArgumentParser(prog='PROG')
parser.add_argument('-input',
help='name of input file',
type=argparse.FileType("r", encoding='UTF-8'))
parser.add_argument('-o',
'--output',
help='name of output file',
type=argparse.FileType("w", encoding='UTF-8'),
default="-")
args = parser.parse_args()
data = ws.parse_fasta(args.input)
args.output.write(str(data))
#!/usr/bin/env python
import sys
import ws2016 as ws
#sys.argv[0] - prorgam name
#sys.argv[1] - first argument
if len(sys.argv) > 1:
data = []
with open(sys.argv[1], "rb") as f:
data.append(ws.parse_fasta(f))
data.append(ws.parse_fasta(f))
print(len(data))