def preprocess(m,N):
n = len(m)
L = n-1
frames = 10
x = np.linspace(0.0, 1.0, m[0])
sums = np.zeros((4,m[0]),np.float)
# get paramenters that remain the same for all runs
f = open('mmc_testcase.inp', 'r')
info = f.read()
f.close
for count in range(N):
# uniform varying values
v = random.uniform(0.5,3)
#v = random.gauss(3,1.0)
ux = ("a = " + str(v))
folder = ("U_" + str(v))
## create Warpx .pin file
out = open('testcase.inp','w')
for line in info:
out.write(line.replace("a = value",ux))
out.close
where1 = ('L'+str(L) + '/' + folder)
os.mkdir(where1)
os.system("mpirun -n 1 $warpxp -i testcase.inp")
os.system("mv *.h5 *.log " + where1)
df = wx.WxData(where1+'/euler_mmc', frames)
qf = dh.read('qnew')
vf = qf[:, 1]/qf[:, 0]
xf = np.linspace(qf.grid.lowerBounds[0],qf.grid.upperBounds[0],qf.grid.numPhysCells[0])
df.close
Xf = np.interp(x,xh,vl)
Xc=np.zeros(m[0], np.float)
sums[1,:] = sums[1,:] + np.sum(Xf-Xc)
sums[2,:] = sums[2,:] + np.sum((Xf-Xc)*(Xf-Xc))
sums[3,:] = sums[3,:] + np.sum(Xf)
sums[4,:] = sums[4,:] + np.sum(Xf*Xf)
return sums
def getdata(v, LS, BFP, res, L, frames):
os.system("cp input_mmc.inp mmc_testcase.inp")
resx = res
resy = res / 2
for line in fileinput.input("mmc_testcase.inp", inplace=1):
if "ME" in line:
line = line.replace("ME", str(v))
elif " Cells = [resx, resy]" in line:
line = line.replace(
" Cells = [resx, resy]",
" Cells = [" + str(resx) + ", " + str(resy) + "]")
elif "LS" in line:
line = line.replace("LS", str(LS))
elif "bpert" in line:
line = line.replace("bpert", str(BFP))
sys.stdout.write(line)
folder = ("U_" + str(v))
where1 = ('L' + str(L) + '/' + folder)
if not (os.path.exists(where1)):
os.mkdir(where1)
p = subprocess.Popen(
"crun -nodes 16 -cores 128 $warpx -i mmc_testcase.inp", shell=True)
sts = os.waitpid(p.pid, 0)[1]
fluxtfh = np.zeros(frames + 1, np.float)
for i in range(0, frames + 1):
# open file for reading
dtfh = wx.WxData('mmc_testcase', i)
qtfh = dtfh.read('qnew')
# get Y-axis spacing
dxtfh = qtfh.grid.dx[0]
nytfh = qtfh.grid.numPhysCells[1]
bytfh = qtfh[:, int(np.ceil(nytfh / 2)), 14]
fluxtfh[i] = dxtfh * np.sum(np.fabs(bytfh))
dtfh.close()
Ly = 12.8
fluxtfh = fluxtfh / (2 * Ly)
fluxtfh = 0.2 * fluxtfh / fluxtfh[0] # rescale to match GEM conditions
os.system('mv *.h5 *.log mmc_testcase.inp ' + where1)
return fluxtfh
import glob
import os
import subprocess
import wxdata as wxdata2
from pylab import *
from numpy import *
import numpy
frames = 40
Ly = 12.8
wci = 0.1
filename = 'ssrecon_wv_0'
flux = numpy.zeros(frames+1, numpy.float)
for n in range(0,frames+1):
dh = wxdata2.WxData(filename, n)
q = dh.read('qnew')
dx = (q.grid.upperBounds[1]-q.grid.lowerBounds[1])/q.grid.numPhysCells[1]
ny = int(round(q.grid.numPhysCells[1]/2))
by = q[:, ny, 14]
flux[n] = dx*numpy.sum( numpy.fabs(by) )
dh.close()
flux = flux/(2*Ly)
flux = 2*wci*flux/flux[0] # rescale to match GEM conditions
numpy.savetxt((filename+'.dat'),flux)
def preprocess(m, N, L, frames, res):
import numpy as np
import os
import random
import fileinput
import sys
import string
import wxdata as wx
x = np.linspace(0.0, 1.0, res)
sums = np.zeros((4, res), np.float)
for count in range(int(N)):
# uniform varying values
v = random.uniform(1.0e-10, 1.0e-4)
#v = random.gauss(3,1.0)
os.system("cp input3.inp mmc_testcase.inp")
for line in fileinput.input("mmc_testcase.inp", inplace=1):
if " u_i = value" in line:
line = line.replace(" u_i = value",
" u_i = " + str(v))
elif " Cells = [nx]" in line:
line = line.replace(" Cells = [nx]",
" Cells = [" + str(m[L]) + "]")
sys.stdout.write(line)
os.system("mpirun -n 1 $warpxp -i mmc_testcase.inp")
df = wx.WxData('mmc_testcase', frames)
qf = df.read('qnew')
vf = qf[:, 1] / qf[:, 0]
xf = np.linspace(qf.grid.lowerBounds[0], qf.grid.upperBounds[0],
qf.grid.numPhysCells[0])
df.close
Xf = np.interp(x, xf, vf)
folder = ("U_" + str(v))
where1 = ('L' + str(L) + '/' + folder)
os.mkdir(where1)
os.system("mv *.h5 *.log mmc_testcase.inp " + where1)
if L > 0:
os.system("cp input3.inp mmc_testcase.inp")
for line in fileinput.input("mmc_testcase.inp", inplace=1):
if " u_i = value" in line:
line = line.replace(" u_i = value",
" u_i = " + str(v))
elif " Cells = [nx]" in line:
line = line.replace(
" Cells = [nx]",
" Cells = [" + str(m[L - 1]) + "]")
sys.stdout.write(line)
os.system("mpirun -n 1 $warpxp -i mmc_testcase.inp")
dc = wx.WxData('mmc_testcase', frames)
qc = dc.read('qnew')
vc = qc[:, 1] / qc[:, 0]
xc = np.linspace(qc.grid.lowerBounds[0], qc.grid.upperBounds[0],
qc.grid.numPhysCells[0])
dc.close
Xc = np.interp(x, xc, vc)
where2 = ('L' + str(L - 1) + '/' + folder)
os.mkdir(where2)
os.system("mv *.h5 *.log mmc_testcase.inp " + where2)
else:
Xc = np.zeros(res, np.float)
sums[0, :] = sums[0, :] + (Xf - Xc)
sums[1, :] = sums[1, :] + (Xf - Xc) * (Xf - Xc)
sums[2, :] = sums[2, :] + Xf
sums[3, :] = sums[3, :] + Xf * Xf
return sums
frames = 40
Ly = 12.8
wci = 0.1
if os.path.exists('ssrecon_wv_2.pin'):
d = ['ssrecon_wv_0', 'ssrecon_wv_1', 'ssrecon_wv_2']
elif os.path.exists('ssrecon_wv_1.pin'):
d = ['ssrecon_wv_0', 'ssrecon_wv_1']
else:
d = ['ssrecon_wv_0']
for m in range(0, len(d)):
flux = numpy.zeros(frames + 1, numpy.float)
for n in range(0, frames + 1):
dh = wxdata2.WxData(d[m], n)
q = dh.read('qnew')
dx = (q.grid.upperBounds[1] -
q.grid.lowerBounds[1]) / q.grid.numPhysCells[1]
ny = int(round(q.grid.numPhysCells[1] / 2))
by = q[:, ny, 14]
flux[n] = dx * numpy.sum(numpy.fabs(by))
dh.close()
flux = flux / (2 * Ly)
flux = 2 * wci * flux / flux[0] # rescale to match GEM conditions
numpy.savetxt((d[m] + str('.dat')), flux)
import glob
import os
import subprocess
import wxdata as wxdata2
from pylab import *
from numpy import *
import numpy
frames = 40
Ly = 12.8
wci = 0.1
d = 'recon_pcm'
flux = numpy.zeros(frames+1, numpy.float)
for n in range(0,frames+1):
dh = wxdata2.WxData(d, n)
q = dh.read('qnew')
dx = (q.grid.upperBounds[1]-q.grid.lowerBounds[1])/q.grid.numPhysCells[1]
ny = int(round(q.grid.numPhysCells[1]/2))
by = q[:, ny, 14]
flux[n] = dx*numpy.sum( numpy.fabs(by) )
dh.close()
flux = flux/(2*Ly)
flux = 2*wci*flux/flux[0] # rescale to match GEM conditions
numpy.savetxt((d+str('.dat')),flux)
import os
import subprocess
import wxdata as wxdata2
from pylab import *
import numpy as np
from numpy import *
frames = 40
location = "/home/sousae/dbg_warpx/recon_mmc/ssrecon_wv"
minpress = 10.0
for n in range(0,frames+1):
dh = wxdata2.WxData(location, n)
q = dh.read('qnew')
x = np.linspace(q.grid.lowerBounds[0],q.grid.upperBounds[0],q.grid.numPhysCells[0])
y = np.linspace(q.grid.lowerBounds[1],q.grid.upperBounds[1],q.grid.numPhysCells[1])
X, Y = np.meshgrid(y,x)
by = q[:, :, 4]
minpress = min(minpress,by.min())
pcolor(Y,X,by), colorbar()
filename = str('%03d' % n) + '_recon.png'
savefig(filename, dpi=100)
clf()
dh.close()
command = ('mencoder',
'mf://*_recon.png',