def test_write_empty_xml():
rows = []
xls_reader = XLSReader('data/example_AMP_T2D_Submission_form_V2.xlsx', 'data/T2D_xls2xml_v1.conf')
assert utils.extract_rows(xls_reader, 'File', 'data/T2D_xls2xml_v1.schema', rows)
input_xml = utils.rows_to_xml(rows, 'File')
transformed_xml = utils.transform_xml(input_xml, 'data/T2D_xls2xml_v1.xslt')
assert transformed_xml.getroot() is None # to make sure the transformed_xml is empty
with open('data/out_empty.xml', 'w') as xml_file:
utils.save_xml(transformed_xml, xml_file)
def test_transform_xml():
rows = []
xls_reader = XLSReader('data/example_AMP_T2D_Submission_form_V2.xlsx', 'data/T2D_xls2xml_v1.conf')
assert utils.extract_rows(xls_reader, 'Sample', 'data/T2D_xls2xml_v1.schema', rows)
input_xml = utils.rows_to_xml(rows, 'Sample')
output_xml = utils.transform_xml(input_xml, 'data/T2D_xls2xml_v1.xslt')
with open('data/example_samples.xml') as example_xml:
assert example_xml.readline() == "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n"
assert etree.tostring(output_xml, pretty_print=True) == example_xml.read()
def test_save_xml():
rows = []
xls_reader = XLSReader('data/example_AMP_T2D_Submission_form_V2.xlsx', 'data/T2D_xls2xml_v1.conf')
assert utils.extract_rows(xls_reader, 'Sample', 'data/T2D_xls2xml_v1.schema', rows)
input_xml = utils.rows_to_xml(rows, 'Sample')
transformed_xml = utils.transform_xml(input_xml, 'data/T2D_xls2xml_v1.xslt')
io_stream = StringIO()
utils.save_xml(transformed_xml, io_stream)
io_stream.seek(0)
assert io_stream.read() == open('data/example_samples.xml').read()
io_stream.close()