def default_parameters(cls):
result = Parameters()
result.number1 = 6
result.number2 = 6
result.distance = 0.5
result.bond_type = BOND_SINGLE
return result
def default_parameters(cls):
result = Parameters()
result.number1 = 6
result.number2 = 6
result.distance = 0.5
result.bond_type = BOND_SINGLE
return result
def fn():
context.application.model.file_open("test/input/lau.zml")
context.application.main.select_nodes([context.application.model.universe])
parameters = Parameters()
parameters.number1 = 14
parameters.number2 = 14
parameters.distance = 6.0
parameters.bond_type = BOND_SINGLE
AutoConnectParameters = context.application.plugins.get_action("AutoConnectParameters")
assert AutoConnectParameters.analyze_selection(parameters)
AutoConnectParameters(parameters)
def fn():
context.application.model.file_open("test/input/lau.zml")
context.application.main.select_nodes(
[context.application.model.universe])
parameters = Parameters()
parameters.number1 = 14
parameters.number2 = 14
parameters.distance = 6.0
parameters.bond_type = BOND_SINGLE
AutoConnectParameters = context.application.plugins.get_action(
"AutoConnectParameters")
assert AutoConnectParameters.analyze_selection(parameters)
AutoConnectParameters(parameters)
def fn():
context.application.model.file_open("test/input/tpa.zml")
universe = context.application.model.universe
context.application.main.select_nodes([universe] + universe.children)
parameters = Parameters()
parameters.number1 = 6
parameters.number2 = 6
parameters.distance = 3.0
parameters.bond_type = BOND_SINGLE
AutoConnectParameters = context.application.plugins.get_action("AutoConnectParameters")
assert AutoConnectParameters.analyze_selection(parameters)
AutoConnectParameters(parameters)
Bond = context.application.plugins.get_node("Bond")
num_bonds = sum(isinstance(node,Bond) for node in universe.children)
assert num_bonds == 2*4
def fn():
context.application.model.file_open("test/input/tpa.zml")
universe = context.application.model.universe
context.application.main.select_nodes([universe] + universe.children)
parameters = Parameters()
parameters.number1 = 6
parameters.number2 = 6
parameters.distance = 3.0
parameters.bond_type = BOND_SINGLE
AutoConnectParameters = context.application.plugins.get_action(
"AutoConnectParameters")
assert AutoConnectParameters.analyze_selection(parameters)
AutoConnectParameters(parameters)
Bond = context.application.plugins.get_node("Bond")
num_bonds = sum(isinstance(node, Bond) for node in universe.children)
assert num_bonds == 2 * 4
