def fitness(self, basepairs):
bs = basepairs
bs = [a for a in bs if a != []]
f = hm.fitness(bs)
f += self.add
for seq in bs:
a_sum = sum([s[0] for s in seq])
if a_sum > 180:
return 0.00001
return (100000 / f)**10
def bestRemaining(self, remaining, times):
min = [None, None]
for _ in range(times):
random.shuffle(remaining)
new = FindBestSequence(remaining).finalSequence
v = hm.fitness(new)
if min[0] == None or v <= min[0]:
min[0] = v
min[1] = new
return min[1]