def test_rna_plots(self):
print "test_rna_plots"
RNA.PS_rna_plot(seq1, struct1, "test_ss.ps")
anote = "2 15 1 gmark\n" + "3 cmark\n"
RNA.PS_rna_plot_a(seq1, struct1, "test_ss_a.ps", None, anote)
RNA.PS_dot_plot(seq1, "test_dp.ps")
RNA.ssv_rna_plot(seq1, struct, "test.coord")
print "please check the two postscript files test_ss.ps and test_dp.ps"
RNA.write_parameter_file("test.par")
def rnaplot(seq, struct=None, path='rnaplots', name='temp'):
import RNA
if struct == None:
struct = RNA.fold(seq)[0]
filename = os.path.join(path, name + '.ps')
#RNA.svg_rna_plot(seq,struct,filename)
colors = [" 1. 0. .2", " 0. .9 .5"]
macro = format_cmark_values(range(0, 10), rgb=colors[0])
RNA.PS_rna_plot_a(seq, struct, filename, '', macro)
return filename
