def calcAnovaIS(self):
"""TODO: implement the checks for rerun"""
# calculates Anova on inverse space (IS)
if self.AnovaCheck:
self.IS = Stat.Anova(self.H5, self.Mainframe)
# Parametric Analysis
if self.AnovaParam:
if self.doAnovaParamIS:
self.IS.Param()
self.progressTxt.append('Parametric Anova (IS) : %s' %
self.IS.elapsedTime)
# Non Parametric Analysis
else:
if self.doAnovaNonParamIS:
self.IS.NonParam(self.AnovaIteration)
self.progressTxt.append('Non-Parametric Anova (IS) : %s' %
self.IS.elapsedTime)
# Makes sure that the h5 files are always closed at the end
self.IS.file.close()
self.cancel = self.IS.cancel
# calculates PostHoc on inverse space (IS)
if self.PostHocCheck:
self.ISPostHoc = Stat.PostHoc(self.H5, self.Mainframe)
# Parametric Analysis
if self.PostHocParam:
if self.doPostHocParamIS:
self.ISPostHoc.Param()
self.progressTxt.append('Parametric PostHoc (IS) : %s' %
self.ISPostHoc.elapsedTime)
# Non Parametric Analysis
else:
if self.doPostHocNonParamIS:
self.ISPostHoc.NonParam(self.PostHocIteration)
self.progressTxt.append(
'Non-Parametric PostHoc (IS) : %s' %
self.ISPostHoc.elapsedTime)
# Makes sure that the h5 files are always closed at the end
self.ISPostHoc.file.close()
self.cancel = self.ISPostHoc.cancel
# Multiple testing and writing Data, Post Stat Analysis - i.e Mathematical Morphology, write
if self.SpaceFile == '':
self.SpaceFile = None
Correction = PostStat.MultipleTestingCorrection(
self.H5,
self.Mainframe,
TF=self.PtsConsec,
Alpha=self.Alpha,
SpaceCont=self.Clust,
SpaceFile=self.SpaceFile)
Correction.Calculation()
self.Param = {'Anova': self.AnovaParam, 'PostHoc': self.PostHocParam}
Writing = PostStat.WriteData(self.PathResult,
self.H5,
self.Param,
DataGFP=False)
Writing.StatistcalData(Correction.CorrectedMask)
Writing.IntermediateResult()
Writing.file.close()
def calcAnovaWave(self):
# calculates Anova on wave and/or GFP
if self.AnovaCheck:
self.Wave = Stat.Anova(self.H5, self.Mainframe)
# Parametric Analysis
if self.AnovaParam:
if self.AnalyseType in ["GFP Only", "Both"] \
and self.doAnovaParamGFP:
self.Wave.Param(DataGFP=True)
self.progressTxt.append('Parametric Anova (GFP) : %s' %
self.Wave.elapsedTime)
if self.AnalyseType in ["All Electrodes", "Both"] \
and self.doAnovaParamElect:
self.Wave.Param()
self.progressTxt.append(
'Parametric Anova (All Electrodes) : %s' %
self.Wave.elapsedTime)
# Non Parametric Analysis
else:
if self.AnalyseType in ["GFP Only", "Both"] \
and self.doAnovaNonParamGFP:
self.Wave.NonParam(self.AnovaIteration, DataGFP=True)
self.progressTxt.append('Non-Parametric Anova (GFP) : %s' %
self.Wave.elapsedTime)
if self.AnalyseType in ["All Electrodes", "Both"] \
and self.doAnovaNonParamElect:
self.Wave.NonParam(self.AnovaIteration)
self.progressTxt.append(
'Non-Parametric Anova (All Electrodes) : %s' %
self.Wave.elapsedTime)
# Makes sure that the h5 files are always closed at the end
self.cancel = self.Wave.cancel
self.Wave.file.close()
# calculates PostHoc on wave and/or GFP
if self.PostHocCheck:
self.WavePostHoc = Stat.PostHoc(self.H5, self.Mainframe)
# Parametric
if self.PostHocParam:
if self.AnalyseType in ["GFP Only", "Both"] \
and self.doPostHocParamGFP:
self.WavePostHoc.Param(DataGFP=True)
self.progressTxt.append('Parametric PostHoc (GFP) : %s' %
self.WavePostHoc.elapsedTime)
if self.AnalyseType in ["All Electrodes", "Both"] \
and self.doPostHocParamElect:
self.WavePostHoc.Param()
self.progressTxt.append(
'Parametric PostHoc (All Electrodes) : %s' %
self.WavePostHoc.elapsedTime)
# Non Parametric
else:
if self.AnalyseType in ["GFP Only", "Both"] \
and self.doPostHocNonParamGFP:
self.WavePostHoc.NonParam(self.PostHocIteration,
DataGFP=True)
self.progressTxt.append(
'Non-Parametric PostHoc (GFP) : %s' %
self.WavePostHoc.elapsedTime)
if self.AnalyseType in ["All Electrodes", "Both"] \
and self.doPostHocNonParamElect:
self.WavePostHoc.NonParam(self.PostHocIteration)
self.progressTxt.append(
'Non-Parametric PostHoc (All Electrodes) : %s' %
self.WavePostHoc.elapsedTime)
# Makes sure that the h5 files are always closed at the end
self.cancel = self.WavePostHoc.cancel
self.WavePostHoc.file.close()
# Multiple testing and writing Data
if self.SpaceFile == '':
self.SpaceFile = None
Correction = PostStat.MultipleTestingCorrection(
self.H5,
self.Mainframe,
TF=self.PtsConsec,
Alpha=self.Alpha,
SpaceCont=self.Clust,
SpaceFile=self.SpaceFile)
Correction.Calculation()
self.Param = {'Anova': self.AnovaParam, 'PostHoc': self.PostHocParam}
if self.AnalyseType in ["GFP Only", "Both"]:
Writing = PostStat.WriteData(self.PathResult,
self.H5,
self.Param,
DataGFP=True)
Writing.StatistcalData(Correction.CorrectedMask)
Writing.IntermediateResult()
Writing.file.close()
if self.AnalyseType in ["All Electrodes", "Both"]:
Writing = PostStat.WriteData(self.PathResult,
self.H5,
self.Param,
DataGFP=False)
Writing.StatistcalData(Correction.CorrectedMask)
Writing.IntermediateResult()
Writing.file.close()