def __init__(self, config, progress, restart):
self.logger = logging.getLogger(self.__class__.__name__)
self.progress = progress
self.basedir = None
self.random = config.get('randomization', False)
if 'devices' not in config:
raise ConfigError('"device" is required in the configuration')
adb_path = config.get('adb_path', 'adb')
self.devices = Devices(config['devices'],
adb_path=adb_path,
devices_spec=config.get('devices_spec'))
self.replications = Tests.is_integer(config.get('replications', 1))
self.paths = config.get('paths', [])
self.profilers = Profilers(config.get('profilers', {}), config)
monkeyrunner_path = config.get('monkeyrunner_path', 'monkeyrunner')
self.scripts = Scripts(config.get('scripts', {}),
monkeyrunner_path=monkeyrunner_path)
self.time_between_run = Tests.is_integer(
config.get('time_between_run', 0))
Tests.check_dependencies(self.devices, self.profilers.dependencies())
self.output_root = paths.OUTPUT_DIR
self.result_file_structure = None
if restart:
for device in self.devices:
self.prepare_device(device, restart=True)
def __init__(self, config, progress, restart):
super(WebExperiment, self).__init__(config, progress, restart)
self.browsers = [
BrowserFactory.get_browser(b)(config)
for b in config.get('browsers', ['chrome'])
]
Tests.check_dependencies(self.devices,
[b.package_name for b in self.browsers])
self.duration = Tests.is_integer(config.get('duration', 0)) / 1000
def __init__(self, path, timeout=0, logcat_regex=None):
self.logger = logging.getLogger(self.__class__.__name__)
self.path = path
self.filename = op.basename(path)
if not op.isfile(path):
raise FileNotFoundError(self.filename)
self.timeout = float(Tests.is_integer(timeout)) / 1000
self.logcat_event = logcat_regex
if logcat_regex is not None:
self.logcat_event = Tests.is_string(logcat_regex)
def cross_validate_parameters(dataset_name, train_set, test_set):
dims = [i for i in range(1, 7)]
sigmas = [0.001, 0.01, 0.1, 1, 2, 5]
accuracies = []
best_accu_and_dim = 0, 0
max = 0
for dim in dims:
clf_poly = Perceptron.Perceptron(dataset_name,
train_set[:, :-1],
train_set[:, -1],
_kernel_=2, epochs=10, _dim_=dim)
accuracy, accuracy_index = tests.best_epoch(clf_poly, test_set, 10)
# clf_poly.fit()
# predicted = clf_poly.predict_set(test_set[:, :-1], test_set[:, -1])
# accuracy = clf_poly.accuracy(test_set[:, -1], predicted)
accuracies.append((accuracy, dim))
for accu, dim in accuracies:
if accu > max:
max = accu
best_accu_and_dim = accu, dim
accuracies = []
best_accu_and_sigma = 0, 0
max = 0
for sigma in sigmas:
clf_gaussian = Perceptron.Perceptron(dataset_name,
train_set[:, :-1],
train_set[:, -1],
_kernel_=3, epochs=10, _sigma_=sigma)
accuracy, accuracy_index = tests.best_epoch(clf_gaussian, test_set, 10)
# clf_gaussian.fit()
# predicted = clf_gaussian.predict_set(test_set[:, :-1], test_set[:, -1])
# accuracy = clf_gaussian.accuracy(test_set[:, -1], predicted)
accuracies.append((accuracy, sigma))
for accu, sigma in accuracies:
if accu > max:
max = accu
best_accu_and_sigma = accu, sigma
print("Best accuracy with associated dim: ", best_accu_and_dim, "\n",
"Best accuracy with associated sigma :", best_accu_and_sigma)
return best_accu_and_dim, best_accu_and_sigma
def __init__(self, config):
self.package = None
self.duration = Tests.is_integer(config.get('duration', 0)) / 1000
super(NativeExperiment, self).__init__(config)
for apk in config.get('paths', []):
if not op.isfile(apk):
raise ConfigError('File %s not found' % apk)
def OnLoad():
MessageWindow = GemRB.LoadWindow(0, GUICommon.GetWindowPack(), WINDOW_BOTTOM|WINDOW_HCENTER)
MessageWindow.SetFlags (WF_BORDERLESS|IE_GUI_VIEW_IGNORE_EVENTS, OP_OR)
MessageWindow.AddAlias("MSGWIN")
MessageWindow.AddAlias("HIDE_CUT", 0)
# set up some *initial* text (UpdateControlStatus will get called several times)
TMessageTA = MessageWindow.GetControl(0)
TMessageTA.SetFlags (IE_GUI_TEXTAREA_AUTOSCROLL|IE_GUI_TEXTAREA_HISTORY)
TMessageTA.SetResizeFlags(IE_GUI_VIEW_RESIZE_ALL)
TMessageTA.AddAlias("MsgSys", 0)
TMessageTA.AddAlias("MTA", 0)
TMessageTA.SetColor({'r' : 255, 'g' : 0, 'b' : 0}, TA_COLOR_OPTIONS)
TMessageTA.SetColor({'r' : 255, 'g' : 255, 'b' : 255}, TA_COLOR_HOVER)
results = Tests.RunTests ()
TMessageTA.SetText ("[cap]D[/cap]emo " + "DEMO "*40 + "\n" + results)
PauseButton = MessageWindow.GetControl (2)
PauseButton.SetEvent (IE_GUI_BUTTON_ON_PRESS, lambda: GemRB.GamePause (2, 0))
PauseButton.SetAnimation ("loading")
PauseButton.SetFlags (IE_GUI_BUTTON_PICTURE|IE_GUI_BUTTON_NORMAL, OP_SET)
MapButton = MessageWindow.GetControl (3)
MapButton.SetText ("M")
MapButton.SetEvent (IE_GUI_BUTTON_ON_PRESS, GUIMA.OpenMapWindow)
MapButton.SetEvent (IE_GUI_BUTTON_ON_RIGHT_PRESS, lambda: GemRB.MoveToArea ("ar0110"))
CenterButton = MessageWindow.GetControl (4)
CenterButton.SetText ("C")
CenterButton.SetEvent (IE_GUI_BUTTON_ON_PRESS, lambda: GemRB.GameControlSetScreenFlags (SF_CENTERONACTOR, OP_OR))
InventoryButton = MessageWindow.GetControl (5)
InventoryButton.SetText ("I")
InventoryButton.SetEvent (IE_GUI_BUTTON_ON_PRESS, GUIINV.OpenInventoryWindow)
def __init__(self, config):
self.logger = logging.getLogger(self.__class__.__name__)
self.basedir = None
if 'devices' not in config:
raise ConfigError('"device" is required in the configuration')
adb_path = config.get('adb_path', 'adb')
self.devices = Devices(config['devices'], adb_path=adb_path)
self.replications = Tests.is_integer(config.get('replications', 1))
self.paths = config.get('paths', [])
self.profilers = Profilers(config.get('profilers', {}))
monkeyrunner_path = config.get('monkeyrunner_path', 'monkeyrunner')
self.scripts = Scripts(config.get('scripts', {}),
monkeyrunner_path=monkeyrunner_path)
self.time_between_run = Tests.is_integer(
config.get('time_between_run', 0))
Tests.check_dependencies(self.devices, self.profilers.dependencies())
self.output_root = paths.OUTPUT_DIR
def long_task(self):
"""Background task that runs a long function with progress reports."""
Tests.client_code(testOne)
message = ''
total = random.randint(10, 50)
for i in range(total):
self.update_state(state='PROGRESS',
meta={
'current': i,
'total': total,
'status': message
})
time.sleep(1)
return {
'current': 100,
'total': 100,
'status': 'Task completed!',
'result': 42
}
def __init__(self, config):
super(Batterystats, self).__init__(config)
self.profile = False
self.cleanup = config.get('cleanup')
# "config" only passes the fields under "profilers", so config.json is loaded again for the fields below
config_file = load_json(op.join(paths.CONFIG_DIR, 'config.json'))
self.type = config_file['type']
self.systrace = config_file.get('systrace_path', 'systrace')
self.powerprofile = config_file['powerprofile_path']
self.duration = Tests.is_integer(config_file.get('duration', 0)) / 1000
def main(argv):
parser = argparse.ArgumentParser()
parser.add_argument("-t","--translate",type=str,help="translates a Japanese sentence to English and writes it to a file")
parser.add_argument("--batch-translate",action="store_true", help="translates each line in a file and writes translations to a file")
parser.add_argument("--test",type=str, help="tests translation system using file containing test cases")
parser.add_argument("--tt", type=str, help="tests the tokenizing using a file")
parser.add_argument("-v","--verbose", action="store_true")
parser.add_argument("-i", "--interactive", action="store_true", help="run an interactive version of the system")
parser.add_argument("-p", "--paraphrase", action="store_true", help="count translations as correct during testing if they are paraphrases of the gold translation")
parser.add_argument("--input", type=str, help="input file for translation", default=None)
parser.add_argument("--output", type=str, help="output file for translation", default=None)
args = parser.parse_args()
Constants.VERBOSE = args.verbose
Constants.PARAPHRASE = args.paraphrase
if args.interactive:
start_interactive()
if args.translate:
if args.output and args.translate != "":
PrintTools.write_to_file(translate(args.translate), args.output)
else:
print("Please specify text to translate and output file")
elif args.batch_translate:
if args.input and args.output:
batch_translate(args.input, args.output)
else:
print("Please specify input and output files")
elif args.test:
Tests.test_translator(args.test)
elif args.tt:
Tests.test_tokenizer(args.tt)
else:
print("Incorrect arguments")
parser.print_help()
def __init__(self, config):
super(Android, self).__init__(config)
self.profile = False
available_data_points = ['cpu', 'mem']
self.interval = float(
Tests.is_integer(config.get('sample_interval', 0))) / 1000
self.data_points = config['data_points']
invalid_data_points = [
dp for dp in config['data_points']
if dp not in set(available_data_points)
]
if invalid_data_points:
self.logger.warning('Invalid data points in config: {}'.format(
invalid_data_points))
self.data_points = [
dp for dp in config['data_points']
if dp in set(available_data_points)
]
self.data = [['datetime'] + self.data_points]
def OnLoad():
# global PortraitWindow, OptionsWindow
GemRB.GameSetPartySize(MAX_PARTY_SIZE)
GemRB.GameSetProtagonistMode(1)
GemRB.LoadWindowPack(GUICommon.GetWindowPack())
# GUICommonWindows.PortraitWindow = None
# GUICommonWindows.ActionsWindow = None
# GUICommonWindows.OptionsWindow = None
# ActionsWindow = GemRB.LoadWindow(3)
# OptionsWindow = GemRB.LoadWindow(0)
# PortraitWindow = GUICommonWindows.OpenPortraitWindow(1)
# GemRB.SetVar("PortraitWindow", PortraitWindow.ID)
# GemRB.SetVar("ActionsWindow", ActionsWindow.ID)
# GemRB.SetVar("OptionsWindow", OptionsWindow.ID)
GemRB.SetVar("TopWindow", -1)
GemRB.SetVar("OtherWindow", -1)
GemRB.SetVar("FloatWindow", -1)
GemRB.SetVar("PortraitPosition", 2) #Right
GemRB.SetVar("ActionsPosition", 4) #BottomAdded
GemRB.SetVar("OptionsPosition", 0) #Left
GemRB.SetVar("MessagePosition", 4) #BottomAdded
GemRB.SetVar("OtherPosition", 5) #Inactivating
GemRB.SetVar("TopPosition", 5) #Inactivating
# GUICommonWindows.OpenActionsWindowControls (ActionsWindow)
# GUICommonWindows.SetupMenuWindowControls (OptionsWindow, 1, None)
## GUICommon.GameWindow.SetVisible (WINDOW_VISIBLE)
UpdateControlStatus()
# set up some *initial* text (UpdateControlStatus will get called several times)
TMessageTA.SetFlags (IE_GUI_TEXTAREA_AUTOSCROLL|IE_GUI_TEXTAREA_HISTORY)
results = Tests.RunTests ()
TMessageTA.SetText ("[cap]D[/cap]emo " + "DEMO "*40 + "\n" + results)
print results
def test(dtb_url=default_dtb,
schema="Football",
market="1x2",
margin='basic',
csv=True,
csvfile="",
bookmakers=None):
if bookmakers is None:
bookmakers = default_bookmakers
closed, opening, _, _ = load_data(dtb_url=dtb_url,
schema=schema,
market=market,
to_numpy=False,
csv=csv,
csv_file=csvfile)
if closed is None:
return
for bookmaker in bookmakers:
closed_pom = closed[closed['Bookmaker'] == bookmaker]
opening_pom = opening[opening['Bookmaker'] == bookmaker]
closed_odds = to_odds(closed_pom, market=market)
closed_results = closed_pom['results']
opening_odds = to_odds(opening_pom, market=market)
opening_results = opening_pom['results']
test = Tests.Tests(closed_odds=closed_odds,
opening_odds=opening_odds,
market=market,
schema=schema,
margin=margin,
opening_results=opening_results,
closed_results=closed_results,
Bookmaker=bookmaker,
test_list=config.default_list,
txt_path=config.txt_path,
pickle_path=config.pickle_path,
png_path=config.png_path)
test.test()
test.save()
def testme(files=None):
"""
Test function
"""
import Tests
from ROOT import TH1F,TFile
if files != None:
in1 = TFile( files[0] )
in2 = TFile( files[1] )
hname = "Spectra/hProtonSpectrum"
h1=in1.Get( hname )
h2=in2.Get( hname )
print h1,h2
else:
h1 = TH1F("h1","h",100,-10,10)
h2 = TH1F("h2","h",100,-10,10)
h1.FillRandom("gaus")
h2.FillRandom("gaus")
from ROOT import TCanvas
global c
c=TCanvas()
c.Divide(1,2)
c.cd(1)
h1.DrawCopy()
h2.SetLineColor(2)
h2.DrawCopy("same")
from Utils import DataType
#aTest = Tests.KolmogorovSmirnovTest( h1 , h2 , DataType.BINNED1D)
aTest = Tests.Binned1DChi2Test(h1,h2)
#print aTest.pval(),aTest.stat()
aResult = Output("A-Test")
anAlgo = Algorithm( aTest , aResult )
c.cd(2)
anAlgo.test.residuals.Draw()
anAlgo.test.residuals.Draw()
print anAlgo.check()
print aResult
return h1,h2,anAlgo.test.residuals
def deconstruct_field(original_ff_spectral,
kx_array,
kz_array,
Nm,
y,
c,
Re,
baseflow,
mean_profile,
sparse):
'''
Deconstruct given flow field and return the resolvent modes,
forcing modes, singular values and amplitude coefficients
needed to reconstruct it.
=================================================================
INPUTS:
=================================================================
original_ff_spectral: 3D array of flow field to
approximate in xz spectral form
with Chebyshev nodes in
wall-normal direction
(Chebyshev spacing).
Stacked in wall-normal direction:
dimensions: (Nx, Nd*Ny, Nz).
kx_array: 1D array of streamwise Fourier
modes.
kz_array: 1D array of spanwise Fourier
modes.
Nm: Number of interior Chebyshev nodes,
i.e. Ny - 2 (endpoints removed).
y: Grid points in the wall-normal
direction.
c: Wavespeed.
Re: Reynolds number based on laminar
baseflow centreline velocity, i.e.
Re = 1 / nu.
baseflow: Base flow type: [laminar, Couette],
laminar means Plane Poiseuille.
mean_profile: 1D array of streamwise velocity
profile of the turbulent mean in
wall-normal direction,
(endpoints included).
sparse: Boolean that determines whether to
use sparse or full SVD algorithm.
=================================================================
OUTPUTS:
=================================================================
A dictionary named 'deconstructed_dict' which contains:
resolvent_modes: 4D array of resolvent modes
at each Fourier mode combination:
resolvent_modes[mx, mz, :, :] gives
column vectors of given rank, i.e.
rank = resolvent_modes.shape[3].
forcing_modes: 4D array of forcing modes
at each Fourier mode combination:=
resolvent_modes[mx, mz, :, :] gives
column vectors of given rank, i.e.
rank = resolvent_modes.shape[3].
singular_values: 3D array of singular values
at each Fourier mode combination:
singular_values[mx, mz, :] gives
1D array of singular values, where
rank = len(singular_values[mx, mz, :]).
coefficients: 3D array of complex amplitude
coefficients at each
Fourier mode combination:
coefficients[mx, mz, :] gives
1D array of coefficients, where
rank = len(coefficients[mx, mz, :]).
'''
#===============================================================#
#### Store the resolvent modes and amplitude coefficients ####
# at each Fourier mode pair #
#===============================================================#
resolvent_modes_array = np.zeros((len(kx_array), len(kz_array), 3*Nm, 3*Nm), dtype=complex)
forcing_modes_array = np.zeros((len(kx_array), len(kz_array), 3*Nm, 3*Nm), dtype=complex)
coefficients_array = np.zeros((len(kx_array), len(kz_array), 3*Nm), dtype=complex)
sing_vals_array = np.zeros((len(kx_array), len(kz_array), 3*Nm), dtype=float)
#===============================================================#
#### Calculate differentiation matrices and mean flow derivatives
#===============================================================#
chebyshev_differentiation, mean_flow_derivatives = ps.calculate_derivatives(Nm+2, mean_profile, baseflow)
#===============================================================#
#### Loop through wavenumbers ####
#===============================================================#
startTime = datetime.now()
for mx in range(0, len(kx_array)):
kx = kx_array[mx]
# print('\nkx:'+ str(kx))
for mz in range(0, len(kz_array)):
kz = kz_array[mz]
# sys.stdout.write(".")
# sys.stdout.flush()
if kx == 0 and kz == 0: # Zeroth Fourier modes
resolvent_modes_array[mx, mz, :, 0] = original_ff_spectral[mx, :, mz]
continue # Start the loop again
#--------------------------------------------------------
#### Calculate the state vectors -
#--------------------------------------------------------
omega = kx * c
wegihted_transfer_function, w = ps.calculate_transfer_function(kx, kz, Re, Nm, omega, chebyshev_differentiation, mean_flow_derivatives)
#--------------------------------------------------------
#### Perform SVD -
#--------------------------------------------------------
if sparse:
weighted_resolvent_modes, singular_values, weighted_forcing_modes = svd(wegihted_transfer_function, full_matrices=False)
else:
weighted_resolvent_modes, singular_values, weighted_forcing_modes = svd(wegihted_transfer_function)
#--------------------------------------------------------
#### Test: SVD -
#--------------------------------------------------------
Tests.SVD(weighted_resolvent_modes, singular_values, weighted_forcing_modes, wegihted_transfer_function, sparse)
#--------------------------------------------------------
#### Test: Orthogonality -
#--------------------------------------------------------
Tests.orthogonality(weighted_resolvent_modes)
Tests.orthogonality(weighted_forcing_modes)
#--------------------------------------------------------
#### Test: Invertibility -
#--------------------------------------------------------
Tests.invertible(np.diag(singular_values))
#--------------------------------------------------------
#### Retrieve non-grid-weighted (physical) modes -
#--------------------------------------------------------
weighted_resolvent_modes = np.asmatrix(weighted_resolvent_modes)
weighted_forcing_modes = np.asmatrix(weighted_forcing_modes)
resolvent_modes = np.linalg.solve(w, weighted_resolvent_modes)
forcing_modes = np.linalg.solve(w, weighted_forcing_modes)
#--------------------------------------------------------
#### Tests: Continuity condition -
#--------------------------------------------------------
Tests.continuity(resolvent_modes, np.diag(singular_values), kx, kz, Nm, chebyshev_differentiation['D1'])
#--------------------------------------------------------
#### Fix phase of resolvent modes -
# based on critical layer or centreline -
#--------------------------------------------------------
phase_shift = np.zeros((resolvent_modes.shape[1], resolvent_modes.shape[1]), dtype=np.complex128)
ind0 = Nm/2 + 1 # Use centreline, unless
if c < 1.0:
inds = Tests.indices(mean_flow_derivatives['U'].diagonal(), lambda x: x > c)
if len(inds) > 0:
ind0 = inds[0]
np.fill_diagonal(phase_shift, np.exp(-1j * np.angle(resolvent_modes[ind0,:])))
resolvent_modes *= phase_shift
#--------------------------------------------------------
#### Project resolvent modes to get coefficients -
#--------------------------------------------------------
# Initialize amplitude coefficients vector
xi = np.zeros((3*Nm, 1), dtype=complex)
# Projection
xi = inv(np.diag(singular_values)) * resolvent_modes.H * w.H * w * np.asmatrix(original_ff_spectral[mx, :, mz]).T
Tests.projection(xi, np.diag(singular_values), resolvent_modes, np.asmatrix(original_ff_spectral[mx, :, mz]).T, 1e-10)
#--------------------------------------------------------
#### Store resolvent modes, singular values and coeffs. -
#--------------------------------------------------------
resolvent_modes_array[mx, mz, :, :] = resolvent_modes
forcing_modes_array[mx, mz, :, :] = forcing_modes
coefficients_array[mx, mz, :] = np.squeeze(np.asarray(xi))
sing_vals_array[mx, mz, :] = singular_values
calcTime = datetime.now() - startTime
# print("\n\n\n")
# print(calcTime)
# print("\n\n\n")
deconstructed_dict = {}
deconstructed_dict['resolvent_modes'] = resolvent_modes_array
deconstructed_dict['forcing_modes'] = forcing_modes_array
deconstructed_dict['singular_values'] = sing_vals_array
deconstructed_dict['coefficients'] = coefficients_array
return deconstructed_dict
ff.x, ff.y, ff.velocityField[i, :, :, j].T,
":", ":", format(ff.z[j], '.2f'),
ff.Re,
"-", "-", str(j),
ff.velocityField[m, :, :, j].T,
ff.velocityField[p, :, :, j].T,
"x", "y", velName,
vl_max, vl_min, args.Quiver, contour_levels,
printFullTitle, args.Small, args.Type)
#===================================================================#
#### If Co-Ordinate given ####
#===================================================================#
printFullTitle = True
if args.Coordinate:
if n == 0:
coords = Tests.indices(ff.x, lambda m: m > float(args.Coordinate))
x_coord = coords[0]
x_directory = ut.make_Folder(images_directory, "x", False)
ut.plot_Contour(x_directory, str(args.File[:-3]),
ff.z, ff.y, ff.velocityField[i, x_coord, :, :],
format(ff.x[x_coord], '.2f'), ":", ":",
ff.Re,
str(x_coord), "-", "-",
ff.velocityField[m, x_coord, :, :],
ff.velocityField[p, x_coord, :, :],
"z", "y", velName,
vl_max, vl_min, args.Quiver, contour_levels,
printFullTitle, args.Small, args.Type)
elif n == 1:
coords = Tests.indices(ff.y, lambda m: m > float(args.Coordinate))
y_coord = coords[-1]
def test(self):
r = jsonpickle.encode(Tests.testear(), unpicklable=False)
return json.loads(r)
def OnTest(self, event):
import Tests
Tests.test_wxFrame(self)
def resolvent_formulation(ff):
#===============================================================#
#### Initialize 3D array to store approximated velocity field ###
#===============================================================#
# Velocity field is stacked in the wall-normal direction.
tmp = np.zeros((ff.Nx, ff.Nd*ff.Nm, ff.Nz), dtype=complex)
# Note that the number of gridpoints in the wall-normal direction
# are equal to the number of interior Chebyshev nodes. This is
# becasue when reshaped, the velocity field is missing its
# wall-boundaries, i.e. top and bottom xz-planes.
#===============================================================#
#### Calculate differentiation matrices and mean flow derivatives
#===============================================================#
chebyshev_differentiation, mean_flow_derivatives = ps.calculate_derivatives(ff.Ny, [], ff.baseflow)
#===============================================================#
#### Loop through Wavepacket ####
#===============================================================#
for triplet in range(0, len(ff.kx)):
#===========================================================#
#### Get fundamental wavenumbers from Wavepacket ####
#===========================================================#
fund_alpha = ff.kx[triplet]
fund_beta = ff.kz[triplet]
amplitude = ff.chi_tilde[triplet]
#===========================================================#
#### Calculate first Fourier modes ####
#===========================================================#
kx_array = fund_alpha * ff.Mx
kz_array = fund_beta * ff.Mz
#===========================================================#
#### Loop through the Fourier modes ####
#===========================================================#
for mx in range(0, len(kx_array)):
kx = kx_array[mx] # Streamwise Fourier mode
for mz in range(0, len(kz_array)):
kz = kz_array[mz] # Spanwise Fourier mode
if kx == 0 or kz == 0:
continue
print('kx:\t'+ str(kx) + "\tkz:\t" + str(kz))
#----------------------------------------------------
#### Calculate the state vectors -
#----------------------------------------------------
omega = kx * ff.c
wegihted_transfer_function, w = ps.calculate_transfer_function(kx, kz, ff.Re, ff.Nm, omega, chebyshev_differentiation, mean_flow_derivatives)
#----------------------------------------------------
#### Perform SVD -
#----------------------------------------------------
weighted_resolvent_modes, singular_values, weighted_forcing_modes = svd(wegihted_transfer_function)
#----------------------------------------------------
#### Test: SVD -
#----------------------------------------------------
Tests.SVD(weighted_resolvent_modes, singular_values, weighted_forcing_modes, wegihted_transfer_function, False)
#----------------------------------------------------
#### Test: Orthogonality -
#----------------------------------------------------
Tests.orthogonality(weighted_resolvent_modes)
Tests.orthogonality(weighted_forcing_modes)
#----------------------------------------------------
#### Test: Invertibility -
#----------------------------------------------------
Tests.invertible(np.diag(singular_values))
#----------------------------------------------------
#### Retrieve non-grid-weighted (physical) modes -
#----------------------------------------------------
weighted_resolvent_modes = np.asmatrix(weighted_resolvent_modes)
weighted_forcing_modes = np.asmatrix(weighted_forcing_modes)
resolvent_modes = np.linalg.solve(w, weighted_resolvent_modes)
forcing_modes = np.linalg.solve(w, weighted_forcing_modes)
#----------------------------------------------------
#### Test: Continuity condition -
#----------------------------------------------------
Tests.continuity(resolvent_modes, np.diag(singular_values), kx, kz, ff.Nm, chebyshev_differentiation['D1'])
#----------------------------------------------------
#### Fix phase of resolvent modes -
# based on critical layer or centreline -
#----------------------------------------------------
phase_shift = np.zeros((resolvent_modes.shape[1], resolvent_modes.shape[1]), dtype=np.complex128)
ind0 = ff.Nm/2 + 1 # Use centreline, unless
if ff.c < 1.0:
inds = Tests.indices(mean_flow_derivatives['U'].diagonal(), lambda x: x > ff.c)
if len(inds) > 0:
ind0 = inds[0]
np.fill_diagonal(phase_shift, np.exp(-1j * np.angle(resolvent_modes[ind0,:])))
resolvent_modes *= phase_shift
# Alternative Method:
# # Non-weighted forcing modes (physical forcing modes)
# unweighted_forcing_modes = np.linalg.solve(state_vecs['w'], forcing_modes_h.conjugate().T)
# unweighted_forcing_modes *= phase_shift
# unweighted_H = np.linalg.inv(state_vecs['w']) * state_vecs['H'] * state_vecs['w']
# unweighted_vel_modes = unweighted_H * unweighted_forcing_modes * np.diag(1.0/singular_values)
# delta_r = unweighted_vel_modes.real - resolvent_modes.real
# delta_i = unweighted_vel_modes.imag - resolvent_modes.imag
#----------------------------------------------------
#### Calculate spectral velocity vector -
# u_tilde = psi * sigma * xi -
# u_tilde = psi * chi -
#----------------------------------------------------
u_tilde = resolvent_modes[:, 0] * amplitude # Rank 1
#----------------------------------------------------
# Inverse fourier transform -
#----------------------------------------------------
u_tilde = np.asmatrix(u_tilde)
physical_ff = np.zeros((ff.Nx, ff.Nd*ff.Nm, ff.Nz), dtype=complex)
physical_ff = ps.my_ifft(u_tilde, kx, kz, ff)
tmp += physical_ff
return tmp
print("COMMON: ")
print(common)
print("UNCOMMON: ")
print(uncommon)
print("ZEROS: ")
print(zeros)
analyzeKenoData.checkNums(testFile, maxDraw, 10, uncommon[:3])
#Run test proven in 3 with
if trigger == 4:
testFolder = 'kenoData/kenoNum01-2015'
print("Testing with " + testFolder)
#f_count = 0
#t_count = 0
for filename in os.listdir(testFolder):
fullPath = (testFolder+'/'+filename)
earnings = Tests.test4(fullPath, 4)
print("EARNINGS: " + str(earnings))
'''
if(Tests.test3(fullPath)):
t_count+=1
else:
f_count+=1
print("TRUE: "+ str(t_count))
print("FALSE: " + str(f_count))
'''
#Step 1: Get Data from MA Keno site
#Get Yesterday's URL
'''
today = date.today()
def run():
""" Get Test suite and run it """
suite = Tests.suite()
TextTestRunner(verbosity = 2 ).run(suite)
#================================================================
ff_original = ffClass.FlowFieldChannelFlow( file_info['Nd'],
file_info['Nx'],
file_info['Ny'],
file_info['Nz'],
file_info['Lx'],
file_info['Lz'],
file_info['alpha'],
file_info['beta'],
details['c'],
details['bf'],
details['Re'],
file_info['ff'],
"pp")
Tests.fft_ifft(ff_original)
#================================================================
#### Check velocity profile
#================================================================
# Create empty 4D array to store mean flow field
mean = np.zeros((file_info['Nd'], file_info['Nx'], file_info['Ny'], file_info['Nz']))
mean_profile = []
if args.MeanProfile: # Velocity profile given
#------------------------------------------------
#### Read velocity profile
vel_profile = ut.read_Vel_Profile(parent_directory, args.MeanProfile)
# Check to see if it is a mean profile or a deviation profile.
deviation = any(n < 0 for n in vel_profile)
def main(File, Details, VelComponent, SpatialComponent, Coordinate,
Full, SpatiallyAveraged, Quiver, Levels):
#===================================================================#
#### Format current directory path ####
#===================================================================#
pwd = ut.format_Directory_Path(os.getcwd())
#===================================================================#
#### Read file and details file ####
#===================================================================#
file_info, original_attrs = ut.read_H5(File)
details = ut.read_Details(Details)
#===================================================================#
#### Make output directory for images and change into it ####
#===================================================================#
images_directory = ut.make_Folder(pwd, "images_" + str(File)[:-3], False)
os.chdir(images_directory)
#===================================================================#
#### Initialise flow field class with given file ####
#===================================================================#
ff = ffClass.FlowFieldChannelFlow( file_info['Nd'],
file_info['Nx'],
file_info['Ny'],
file_info['Nz'],
file_info['Lx'],
file_info['Lz'],
file_info['alpha'],
file_info['beta'],
details['c'],
details['bf'],
details['Re'],
file_info['ff'],
"pp")
#===================================================================#
#### Set velocity and spatial components ####
#===================================================================#
i = VelComponent
n = SpatialComponent
m=n+1; p=n-1
if m==3:
m=0
if p==-1:
p=2
velName = ""
if i==0:
velName = "u"
elif i==1:
velName = "v"
elif i==2:
velName = "w"
#===================================================================#
#### Start plotting ####
#===================================================================#
print("Plotting...")
vl_max = np.amax(ff.velocityField[i, :, :, :])
vl_min = np.amin(ff.velocityField[i, :, :, :])
printFullTitle = True
if Levels:
contour_levels = Levels
else:
contour_levels = 20
#===================================================================#
#### If Full selected ####
#===================================================================#
if Full:
if n == 0:
x_directory = ut.make_Folder(images_directory, "x", False)
for j in range(0, ff.Nx):
ut.plot_Contour(x_directory, str(File[:-3]),
ff.z, ff.y, ff.velocityField[i, j, :, :],
format(ff.x[j], '.2f'), ":", ":",
ff.Re,
str(j), "-", "-",
ff.velocityField[m, j, :, :],
ff.velocityField[p, j, :, :],
"z", "y", velName,
vl_max, vl_min, Quiver, contour_levels,
printFullTitle)
elif n == 1:
y_directory = ut.make_Folder(images_directory, "y", False)
for j in range(0, ff.Ny):
ut.plot_Contour(y_directory, str(File[:-3]),
ff.z, ff.x, ff.velocityField[i, :, j, :],
":", format(ff.y[j], '.2f'), ":",
ff.Re,
"-", str(j), "-",
ff.velocityField[m, :, j, :],
ff.velocityField[p, :, j, :],
"z", "x", velName,
vl_max, vl_min, Quiver, contour_levels,
printFullTitle)
elif n == 2:
z_directory = ut.make_Folder(images_directory, "z", False)
for j in range(0, ff.Nz):
ut.plot_Contour(z_directory, str(File[:-3]),
ff.x, ff.y, ff.velocityField[i, :, :, j].T,
":", ":", format(ff.z[j], '.2f'),
ff.Re,
"-", "-", str(j),
ff.velocityField[m, :, :, j].T,
ff.velocityField[p, :, :, j].T,
"x", "y", velName,
vl_max, vl_min, Quiver, contour_levels,
printFullTitle)
#===================================================================#
#### If Co-Ordinate given ####
#===================================================================#
printFullTitle = True
if Coordinate:
if n == 0:
coords = Tests.indices(ff.x, lambda m: m > float(Coordinate))
x_coord = coords[0]
x_directory = ut.make_Folder(images_directory, "x", False)
ut.plot_Contour(x_directory, str(File[:-3]),
ff.z, ff.y, ff.velocityField[i, x_coord, :, :],
format(ff.x[x_coord], '.2f'), ":", ":",
ff.Re,
str(x_coord), "-", "-",
ff.velocityField[m, x_coord, :, :],
ff.velocityField[p, x_coord, :, :],
"z", "y", velName,
vl_max, vl_min, Quiver, contour_levels,
printFullTitle)
elif n == 1:
coords = Tests.indices(ff.y, lambda m: m > float(Coordinate))
y_coord = coords[-1]
y_directory = ut.make_Folder(images_directory, "y", False)
ut.plot_Contour(y_directory, str(File[:-3]),
ff.z, ff.x, ff.velocityField[i, :, y_coord, :],
":", format(ff.y[y_coord], '.2f'), ":",
ff.Re,
"-", str(y_coord), "-",
ff.velocityField[m, :, y_coord, :],
ff.velocityField[p, :, y_coord, :],
"z", "x", velName,
vl_max, vl_min, Quiver, contour_levels,
printFullTitle)
elif n == 2:
coords = Tests.indices(ff.z, lambda m: m > float(Coordinate))
z_coord = coords[0]
z_directory = ut.make_Folder(images_directory, "z", False)
ut.plot_Contour(z_directory, str(File[:-3]),
ff.x, ff.y, ff.velocityField[i, :, :, z_coord].T,
":", ":", format(ff.z[z_coord], '.2f'),
ff.Re,
"-", "-", str(z_coord),
ff.velocityField[m, :, :, z_coord].T,
ff.velocityField[p, :, :, z_coord].T,
"x", "y", velName,
vl_max, vl_min, Quiver, contour_levels,
printFullTitle)
#===================================================================#
#### If Spatially averaging selected ####
#===================================================================#
printFullTitle = False
if SpatiallyAveraged:
if n == 0:
# Average the flow field in teh streamwise direction.
x_averaged_ff = np.zeros((ff.Nd, ff.Ny, ff.Nz))
for nd in range(0, ff.Nd):
for nx in range(0, ff.Nx):
x_averaged_ff[nd, :, :] += ff.velocityField[nd, nx, :, :]
x_averaged_ff *= (1.0 / ff.Nx)
vl_max = np.amax(x_averaged_ff[i, :, :])
vl_min = np.amin(x_averaged_ff[i, :, :])
fileName = str(File)[:-3] + "_x_avgd_"
ut.plot_Contour(images_directory, fileName,
ff.z, ff.y, x_averaged_ff[i, :, :],
"avg", ":", ":",
ff.Re,
"x-avg", "-", "-",
x_averaged_ff[m, :, :],
x_averaged_ff[p, :, :],
"z", "y", velName,
vl_max, vl_min, Quiver, contour_levels,
printFullTitle)
elif n == 1:
# Average the flow field in teh streamwise direction.
y_averaged_ff = np.zeros((ff.Nd, ff.Nx, ff.Nz))
for nd in range(0, ff.Nd):
for ny in range(0, ff.Ny):
y_averaged_ff[nd, :, :] += ff.velocityField[nd, :, ny, :]
y_averaged_ff *= (1.0 / ff.Ny)
vl_max = np.amax(y_averaged_ff[i, :, :])
vl_min = np.amin(y_averaged_ff[i, :, :])
fileName = str(File)[:-3] + "_y_avgd_"
ut.plot_Contour(images_directory, fileName,
ff.z, ff.x, y_averaged_ff[i, :, :],
":", "avg", ":",
ff.Re,
"-", "y-avg", "-",
y_averaged_ff[m, :, :],
y_averaged_ff[p, :, :],
"z", "x", velName,
vl_max, vl_min, Quiver, contour_levels,
printFullTitle)
elif n == 2:
# Average the flow field in teh streamwise direction.
z_averaged_ff = np.zeros((ff.Nd, ff.Nx, ff.Ny))
for nd in range(0, ff.Nd):
for nz in range(0, ff.Nz):
z_averaged_ff[nd, :, :] += ff.velocityField[nd, :, :, nz]
z_averaged_ff *= (1.0 / ff.Nz)
vl_max = np.amax(z_averaged_ff[i, :, :])
vl_min = np.amin(z_averaged_ff[i, :, :])
fileName = str(File)[:-3] + "_z_avgd_"
ut.plot_Contour(images_directory, fileName,
ff.x, ff.y, z_averaged_ff[i, :, :].T,
":", ":", "avg",
ff.Re,
"-", "-", "z-avg",
z_averaged_ff[m, :, :].T,
z_averaged_ff[p, :, :].T,
"x", "y", velName,
vl_max, vl_min, Quiver, contour_levels,
printFullTitle)
ut.print_EndMessage()
'switches': SYS.BPM.switches,
'switch_val': SYS.BPM.switch_val,
'attenuation': SYS.BPM.attn,
'dsc': SYS.BPM.dsc,
'kx': SYS.BPM.kx,
'ky': SYS.BPM.ky
}
with open(subdirectory + "initial_BPM_state.json", 'w') as write_file:
json.dump(data_out, write_file)
Tests.beam_position_equidistant_grid_raster_scan_test(
test_system_object=SYS,
rf_frequency=dls_RF_frequency,
power_level=-40,
nominal_attenuation=10,
x_points=3,
y_points=3,
settling_time=settling_time,
sub_directory=subdirectory)
Tests.beam_power_dependence(test_system_object=SYS,
frequency=dls_RF_frequency,
power_levels=np.arange(-40, -100, -10),
settling_time=settling_time,
sub_directory=subdirectory)
# Tests.fixed_voltage_amplitude_fill_pattern_test(test_system_object=SYS,
# frequency=dls_RF_frequency,
# max_power=-40,
# duty_cycles=np.arange(1, 0, -0.1),
def main(File, Rank, Directory, MeanProfile, Sparse, Testing):
#================================================================
#### Check file type
#================================================================
if File[-3:] == ".h5":
print("HDF5 file given.")
#------------------------------------------------------------
#### Read the HDF5 and details file
#------------------------------------------------------------
file_info, original_attrs = ut.read_H5(File)
details = ut.read_Details("eq1_Details.txt")
#------------------------------------------------------------
#### Copy geometry file into rank-temp
#------------------------------------------------------------
command = "field2ascii ../" + str(File) + " " + str(File)[:-3]
os.system(command)
elif File[-3:] == ".ff":
#------------------------------------------------------------
#### Convert the binary file to ascii
#------------------------------------------------------------
command = "field2ascii -p ../" + str(File) + " " + str(File)[:-3]
print(command)
os.system(command)
#------------------------------------------------------------
#### Read ASCII file and details file
#------------------------------------------------------------
file_info = ut.read_ASC_channelflow("", str(File)[:-3])
details = ut.read_Details("", "u0_Details.txt")
elif File[-3:] == "asc":
#------------------------------------------------------------
#### Read ASCII file and details file
#------------------------------------------------------------
file_info = ut.read_ASC_PP("", str(File)[:-7])
details = ut.read_Details("", "u0_Details.txt")
else: # No file type given.
ut.error("Invalid file given.")
#================================================================
#### Initialise flow field object for field (to approximate)
#================================================================
ff_original = ffClass.FlowFieldChannelFlow( file_info['Nd'],
file_info['Nx'],
file_info['Ny'],
file_info['Nz'],
file_info['Lx'],
file_info['Lz'],
file_info['alpha'],
file_info['beta'],
details['c'],
details['bf'],
details['Re'],
file_info['ff'],
"pp")
Tests.fft_ifft(ff_original)
#================================================================
#### Check velocity profile
#================================================================
# Create empty 4D array to store mean flow field
mean = np.zeros((file_info['Nd'], file_info['Nx'], file_info['Ny'], file_info['Nz']))
mean_profile = []
if MeanProfile: # Velocity profile given
#------------------------------------------------------------
#### Read velocity profile
#------------------------------------------------------------
vel_profile = ut.read_Vel_Profile("", MeanProfile)
# Check to see if it is a mean profile or a deviation profile.
deviation = any(n < 0 for n in vel_profile)
if deviation: # Deviation profile given
# Add baseflow to deviation
baseflow = []
if details['bf'] == "lam": # Laminary base flow
baseflow = 1.0 - ff_original.y**2.0
elif details['bf'] == "cou": # Couette base flow
baseflow = ff_original.y
# Add baseflow to deviation to get turbulent mean profile
mean_profile = vel_profile + np.asarray(baseflow)
else: # Turbulent mean profile given
mean_profile = vel_profile
#------------------------------------------------------------
#### Construct 4D array from mean_profile
#------------------------------------------------------------
mean = ut.make_ff_from_profile(vel_profile,
ff_original.Nd,
ff_original.Nx,
ff_original.Nz)
else:
#------------------------------------------------------------
#### Use base flow only
#------------------------------------------------------------
# Add baseflow to deviation
baseflow = []
if details['bf'] == "lam": # Laminary base flow
baseflow = 1.0 - ff_original.y**2.0
elif details['bf'] == "cou": # Couette base flow
baseflow = ff_original.y
#------------------------------------------------------------
#### Construct 4D array from mean_profile
#------------------------------------------------------------
mean = ut.make_ff_from_profile(np.asarray(baseflow), ff_original.Nd, ff_original.Nx, ff_original.Nz)
#================================================================
#### Initialize mean flow field object
#================================================================
ff_mean = ffClass.FlowFieldChannelFlow( file_info['Nd'],
file_info['Nx'],
file_info['Ny'],
file_info['Nz'],
file_info['Lx'],
file_info['Lz'],
file_info['alpha'],
file_info['beta'],
details['c'],
details['bf'],
details['Re'],
mean,
"pp")
#================================================================
#### ---- Remove the wall boundaries
#================================================================
# Removing the xz-planes at y=1 and y=-1,
# so that the chebyshev nodes can be used to construct
# the transfer function.
ff_original.remove_wall_boundaries()
ff_mean.remove_wall_boundaries()
#================================================================
#### ---- Fourier transform in xz directions
#================================================================
ff_original.make_xz_spectral()
ff_mean.make_xz_spectral()
#================================================================
#### ---- Stack velocity fields in the wall-normal direction
#================================================================
ff_original.stack_ff_in_y()
ff_mean.stack_ff_in_y()
#================================================================
#### Create arrays of Fourier modes to use
#================================================================
# Modes multiplied with fundamental wavenumbers
#(Modes: the physical modes, i.e. the grid points)
kx_array = ff_original.Mx * ff_original.alpha
kz_array = ff_original.Mz * ff_original.beta
# Tests.checkHermitianSymmetry(ff_original.velocityField[:,0:ff_original.numModes,:],
# ff_original.Nx,
# ff_original.Nz)
# Tests.checkHermitianSymmetry(ff_original.velocityField[:,ff_original.numModes:ff_original.numModes*2,:],
# ff_original.Nx,
# ff_original.Nz)
# Tests.checkHermitianSymmetry(ff_original.velocityField[:,2*ff_original.numModes:ff_original.numModes*3,:],
# ff_original.Nx,
# ff_original.Nz)
#================================================================
#### Ensure valid rank is specified
#================================================================
rank = min(Rank, 3*ff_original.numModes)
#### -!-!- TESTING -!-!-: Zeroth mode differences
if MeanProfile:
spectral_mean_profile = np.zeros((3*ff_original.numModes),dtype=complex)
mean_profile_sp = np.fft.fft(mean_profile)
spectral_mean_profile[1:ff_original.numModes] = mean_profile_sp[1:ff_original.numModes]
origFF = ff_original.velocityField[0, :, 0]
diffs = spectral_mean_profile - origFF
diffsn = np.linalg.norm(diffs)
# print("%.2E" % diffsn)
#### -!-!- TESTING -!-!-: Synthesizing a Fourier domain flow field
# fake_field = ff_original.velocityField
## fake_field *= 0.0+0.0j
## fake_field[1,:,1] += 1.0+2.0j
## fake_field[1,:,-1] += 1.0-2.0j
#
#================================================================
#### Deconstruct original flow field
#================================================================
deconstructed_field = cr.test_deconstruct_field(ff_original.velocityField,
kx_array,
kz_array,
ff_original.numModes,
ff_original.y,
ff_original.c,
ff_original.Re,
ff_original.baseflow,
mean_profile,
Sparse)
#================================================================
#### Reconstruct approximated flow field
#================================================================
approximated_ff_spectral = cr.test_construct_field(deconstructed_field['resolvent_modes'],
deconstructed_field['singular_values'],
deconstructed_field['coefficients'],
kx_array,
kz_array,
ff_original.numModes,
rank,
mean_profile,
ff_original.baseflow,
ff_original.y)
#### -!-!- TESTING -!-!-: Synthesizing a Fourier domain flow field
# The retrieved field should be the same as the fak_field...
retrieved_difference = approximated_ff_spectral - ff_original.velocityField
retrieved_difference_n = np.linalg.norm(retrieved_difference)
#================================================================
#### Initialize approximated flow field object
#================================================================
ff_approximated = ffClass.FlowFieldChannelFlow( file_info['Nd'],
file_info['Nx'],
ff_original.numModes, # the velocity field is missing wall boundaries
file_info['Nz'],
file_info['Lx'],
file_info['Lz'],
file_info['alpha'],
file_info['beta'],
details['c'],
details['bf'],
details['Re'],
approximated_ff_spectral,
"sp")
# If not symmetric: you need to filter the negative frequencies in the approximated result.
# This will introduce hermitian symmetry.
#================================================================
#### ---- Unstack velocity fields in the wall-normal direction
#================================================================
ff_approximated.unstack_ff()
ff_mean.unstack_ff()
ff_original.unstack_ff()
#================================================================
#### ---- Inverse Fourier transform approximated and mean velocity fields in xz directions
#================================================================
ff_approximated.make_xz_physical()
ff_mean.make_xz_physical()
ff_original.make_xz_physical()
#================================================================
#### ---- Add wall boundaries
#================================================================
ff_approximated.add_wall_boundaries()
ff_mean.add_wall_boundaries()
ff_original.add_wall_boundaries()
#================================================================
#### Remove mean flow from approximated field (if mean used to reconstruct)
#================================================================
# approximated_field = ff_approximated.velocityField.real - ff_mean.velocityField.real
# ff_approximated.set_ff(approximated_field, "pp")
#
# difference = np.linalg.norm(approximated_field - ff_approximated.velocityField)
#### -!-!- TESTING -!-!-: Full-Rank decomposition and recomposition: (Real Domain)
u_a = ff_approximated.velocityField[0,:,:,:].real
u_o = ff_original.velocityField[0,:,:,:].real
difference = np.linalg.norm(ff_original.velocityField.real - ff_approximated.velocityField.real)
print("")
print("The norm of the difference is " + str(difference))
print("")
#### -!-!- TESTING -!-!-: Projections
if Testing:
#### Remove boundaries
ff_approximated.remove_wall_boundaries()
#### FFT
ff_approximated.make_xz_spectral()
#### stack in y
ff_approximated.stack_ff_in_y()
#### Deconstruct the approximated flow field.
deconstructed_approximated = cr.deconstruct_field(ff_approximated.velocityField,
kx_array,
kz_array,
ff_approximated.numModes,
ff_approximated.c,
ff_approximated.Re,
ff_approximated.baseflow,
rank,
mean_profile,
Sparse,
False)
#### Reconstruct projected approximated flow field.
doubly_approximated_ff_spectral = cr.construct_field( deconstructed_approximated['resolvent_modes'],
deconstructed_approximated['singular_values'],
deconstructed_approximated['coefficients'],
# ff_mean.velocityField,
kx_array,
kz_array,
ff_approximated.numModes)
#### Initialize projected approximated flow field object.
ff_doubly_approximated = ffClass.FlowFieldChannelFlow( file_info['Nd'],
file_info['Nx'],
ff_approximated.numModes, # the velocity field is missing wall boundaries
file_info['Nz'],
file_info['Lx'],
file_info['Lz'],
file_info['alpha'],
file_info['beta'],
details['c'],
details['bf'],
details['Re'],
doubly_approximated_ff_spectral,
"sp")
#### unstack
ff_doubly_approximated.unstack_ff()
ff_approximated.unstack_ff()
#### IFFT
ff_doubly_approximated.make_xz_physical()
ff_approximated.make_xz_physical()
#### add wall boundaries
ff_doubly_approximated.add_wall_boundaries()
ff_approximated.add_wall_boundaries()
#### check differences between modes/sing vals/coeffs
del_sigma = deconstructed_approximated['singular_values'] - deconstructed_field['singular_values']
del_sigmaR = del_sigma.real
del_sigmaI = del_sigma.imag
del_sigma_n = np.linalg.norm(del_sigma)
print("\n\n||sigma_tilde - sigma|| = " + str(del_sigma_n))
del_psi = deconstructed_approximated['resolvent_modes'] - deconstructed_field['resolvent_modes']
del_psiR = del_psi.real
del_psiI = del_psi.imag
del_psi_n = np.linalg.norm(del_psi)
print("\n\n||psi_tilde - psi|| = " + str(del_psi_n))
del_xi = deconstructed_approximated['coefficients'] - deconstructed_field['coefficients']
del_xiR = del_xi.real
del_xiI = del_xi.imag
del_xi_n = np.linalg.norm(del_xi)
print("\n\n||xi_tilde - xi|| = " + str(del_xi_n))
del_ff = ff_doubly_approximated.velocityField.real - ff_approximated.velocityField.real
dim_a = ff_approximated.velocityField.shape
print("\nDimension of approximated ff: " + str(dim_a))
dim_da = ff_doubly_approximated.velocityField.shape
print("\nDimension of doubly approximated ff: " + str(dim_da))
del_ff_n = np.linalg.norm(del_ff)
print("\n\n||u_tilde_tilde - u_tilde|| = " + str(del_ff_n))
#================================================================
#### Create a folder to store the approximated velocity field in
#================================================================
os.chdir(parent_directory) # Go up one directory
rank_folder = File[:-3]+"_rank_" + str(rank) + "/"
rank_folder = parent_directory + rank_folder
#if a rank directory does exist, delete it:
if os.path.exists(rank_folder):
command = "rm -rf " + rank_folder
os.system(command)
#if a rank directory doesn't exist, create one:
if not os.path.exists(rank_folder):
os.mkdir(rank_folder)
# Change into the new rank directory
os.chdir(rank_folder)
#================================================================
#### Save flow field to file
#================================================================
# Check file type
if File[-3:] == ".h5":
#------------------------------------------------------------
# Write the file to disk in H5 format
#------------------------------------------------------------
fileName = File[:-3] + "_rnk_" + str(rank)
ut.write_ASC(ff_approximated, rank_folder, fileName)
#------------------------------------------------------------
# Write binary file
#------------------------------------------------------------
command = "ascii2field -p false -ge ../rank-temp/" + str(File)[:-3] + ".geom " + fileName + ".asc " + fileName + ".h5"
print(command)
os.system(command)
elif File[-3:] == ".ff":
#------------------------------------------------------------
# Write physical ascii file
#------------------------------------------------------------
fileName = File[:-3] + "_rnk_" + str(rank)
ut.write_ASC(ff_approximated, rank_folder, fileName)
#------------------------------------------------------------
# Write binary file
#------------------------------------------------------------
command = "ascii2field -p false -ge ../rank-temp/" + str(File)[:-3] + ".geom " + fileName + ".asc " + fileName + ".ff"
print(command)
os.system(command)
elif File[-3:] == "asc":
#------------------------------------------------------------
# Write physical ascii file
#------------------------------------------------------------
fileName = File[:-3] + "_rnk_" + str(rank)
ut.write_ASC_Py(ff_approximated, rank_folder, fileName)
#================================================================
#### Write decomposed flow field to HDF5 object.
#================================================================
fileName = File[:-3] + "_coeffs"
ut.write_amplitude_coefficients(ff_approximated, rank_folder, fileName, deconstructed_field['coefficients'])
ut.write_Deconstructed_Field(deconstructed_field, ff_approximated, parent_directory, File[:-3])
#================================================================
# Remove ascii file and temporary folder
#================================================================
# os.system("rm *.asc")
os.chdir(parent_directory)
# command = "rm -rf " + temp_rank_folder
# os.system(command)
print("\nFinished")
from scripts import PharaohConvert
from src import Constants
import Tests
import PrintTools
convert = PharaohConvert.get_alignments()
sentences = Tests.read_test_data(
r"/home/nikolaj/PycharmProjects/LitteralJapaneseTranslation/data/sentences_dev.txt"
)
sentences = Tests.merge_word_endings(sentences)
scores = []
i = 1
for sentence in sentences:
system = [(k, v) for k, v in convert.get(i).items()]
gold = sentence.tokens
score = Tests.translation_sentence_score(gold, system)
PrintTools.print_translated_sentence(sentence, system, gold, score)
scores.append(Tests.TranslationScore(len(gold), score))
i += 1
avg = Tests.TranslationScore.make_average(scores)
print("#### average result (Levenshtein distance) ####")
avg.print()
data = client.post(request, headers)
# print(json.dumps(data, indent=4))
return data
################
# Main Program
################
if __name__ == "__main__":
# check program usage
if len(sys.argv) < 2:
print("Usage: Bitfinex.py key.txt\n")
print("key.txt format:")
print("LINE 1: public key")
print("LINE 2: private key")
exit()
# TICKER: get IOTA/USD pair state
#data = b.get(url)
#print(json.dumps(data, indent=4))
# passing bitfinex obj to test module
T.run_tests()
import pygame
import Tests as RN
import variables as var
import numpy as np
ancho = 700
alto = 500
if __name__ == "__main__":
#----------------Inicio----------------
pygame.init()
RN.iniciar()
pantalla = pygame.display.set_mode([ancho, alto])
fin = False
#------------------------------------------------
Tancho = ancho / 2
en_x = 85
en_y = 150
for elemento_vertical in range(len(var.segmentos_verticales)):
var.segmentos_verticales[elemento_vertical].rect.x = en_x
var.segmentos_verticales[elemento_vertical].rect.y = en_y
if elemento_vertical < 1:
en_y += 105
elif (elemento_vertical >= 1 and elemento_vertical < 2):
en_x += 120
else:
en_y -= 105
#-----------------------------------------------------
import LiteralJapanese
import Tests
from Similarity import init_similarity
import Dictionary
import Equality
import Translator
from Grammar import Grammar
sentences = Tests.read_test_data(
r"C:\Users\Nikolaj\PycharmProjects\LitteralJapaneseTranslation\data\sentences_dev.txt"
)
init_similarity()
wrong_def = 0
wrong_word = 0
particle_error = 0
other = 0
for sentence in sentences:
system = LiteralJapanese.translate(sentence.japanese,
translation=sentence.english)
gold = sentence.tokens
min_len = min(len(system), len(gold))
for i in range(min_len - 1):
s_token = system[i]
g_token = gold[i]
if s_token.japanese == g_token.japanese:
is_particle = False
if s_token.token.grammar == Grammar.PARTICLE:
is_particle = True
if not Equality.equals(
ff1.make_xz_spectral()
ff2.make_xz_spectral()
#===================================================================#
#### ---- Stack velocity fields in the wall-normal direction ####
#===================================================================#
ff1.stack_ff_in_y()
ff2.stack_ff_in_y()
#===================================================================#
#### Calculate amplitude/phase difference ####
#===================================================================#
tolerance = 1e-9
print("==========================================")
print("Differences between " + args.File1[:-3] + " and " + args.File2[:-3])
print("==========================================")
message = "Amplitude difference between " + args.File1[:-3] + " and " + args.File2[:-3]
diff_A = Tests.difference(abs(ff1.velocityField), abs(ff2.velocityField), tolerance, message)
diff_P = mean(angle(ff1.velocityField,deg=True) - angle(ff2.velocityField,deg=True))
print("Amplitude diff \t\t%.2E" % diff_A)
print("")
print("Field 1 (deg) \t\t%.6f (avg)" % mean(angle(ff1.velocityField,deg=True)))
print("Field 2 (deg) \t\t%.6f (avg)" % mean(angle(ff2.velocityField,deg=True)))
print("Phase diff (deg) \t%.6f (avg)" % diff_P)
print("")
#===================================================================#
#### Euler form of Fourier transformed field ####
#===================================================================#
print("==========================================")
print("Reconstructed using Euler formula")
print("==========================================")
test_ff1 = abs(ff1.velocityField) * exp(1j * angle(ff1.velocityField))
test_ff2 = abs(ff2.velocityField) * exp(1j * angle(ff2.velocityField))
import Constants
import logging
import time
# Instantiate objects.
constant = Constants.ConstantsHandle()
# Set logger configuration.
logging.basicConfig(filename=constant.log_file_location +
time.strftime("%Y-%m-%d", time.localtime()) + '.log',
format="%(asctime)s:%(levelname)s:%(message)s",
level=logging.DEBUG)
# Instantiate logger.
log = logging.getLogger(__name__)
# Instantiate objects.
test = Tests.TestHandle()
# Log event.
log.info('Starting DQSEGDB Regression Test Suite (' + constant.app_version +
')...')
# Init.
loop = True
try:
# Loop.
while loop:
# Begin attempt.
try:
test.run_test_suite()
# If user stops server.
# Author: Gavrila Andrei
# Scope: Fundamentals of Programming homework
import Tests
import App
Tests.run()
App.run()
print("Come again!")
def test_deconstruct_field(original_ff_spectral,
kx_array,
kz_array,
Nm,
y,
c,
Re,
baseflow,
mean_profile,
sparse):
#===============================================================#
#### Store the resolvent modes and amplitude coefficients ####
# at each Fourier mode pair #
#===============================================================#
resolvent_modes_array = np.zeros((len(kx_array), len(kz_array), 3*Nm, 3*Nm), dtype=np.complex128)
forcing_modes_array = np.zeros((len(kx_array), len(kz_array), 3*Nm, 3*Nm), dtype=np.complex128)
coefficients_array = np.zeros((len(kx_array), len(kz_array), 3*Nm), dtype=np.complex128)
sing_vals_array = np.zeros((len(kx_array), len(kz_array), 3*Nm), dtype=np.float64)
#================================================================
#### Loop through wavenumbers
#================================================================
chebyshev_differentiation, mean_flow_derivatives = ps.calculate_derivatives(Nm+2, mean_profile, baseflow)
#================================================================
#### FFT mean profile
#================================================================
spectral_deviation_profile = np.zeros((3*Nm),dtype=complex)
if len(mean_profile) == 0:
spectral_deviation_profile = original_ff_spectral[0,:,0]
else:
# Remove baseflow from turbulent mean profile
baseflow_profile = []
if baseflow == "lam": # Laminary base flow
baseflow_profile = 1.0 - y**2.0
elif baseflow == "cou": # Couette base flow
baseflow_profile = y
# Remove baseflow from mean to get turbulent deviation profile
vel_profile = mean_profile - np.asarray(baseflow_profile)
deviation_profile_sp = np.fft.fft(vel_profile)
spectral_deviation_profile[1:Nm] = deviation_profile_sp[1:Nm]
#================================================================
#### Loop through wavenumbers
#================================================================
startTime = datetime.now()
for mx in range(0, len(kx_array)):
kx = kx_array[mx]
print('\n\nkx:'+ str(kx))
for mz in range(0, len(kz_array)):
kz = kz_array[mz]
sys.stdout.write(".")
sys.stdout.flush()
if kx == 0 and kz == 0: # Zeroth Fourier modes
resolvent_modes_array[mx, mz, :, 0] = spectral_deviation_profile
continue # Start the loop again
#--------------------------------------------------------
#### Calculate the state vectors
#--------------------------------------------------------
omega = kx * c
wegihted_transfer_function, w = ps.calculate_transfer_function(kx, kz, Re, Nm, omega, chebyshev_differentiation, mean_flow_derivatives)
#--------------------------------------------------------
#### Perform SVD
#--------------------------------------------------------
if sparse:
weighted_resolvent_modes, singular_values, weighted_forcing_modes = svd(wegihted_transfer_function, full_matrices=False)
else:
weighted_resolvent_modes, singular_values, weighted_forcing_modes = svd(wegihted_transfer_function)
#--------------------------------------------------------
#### Test: SVD
#--------------------------------------------------------
Tests.SVD(weighted_resolvent_modes, singular_values, weighted_forcing_modes, wegihted_transfer_function, sparse)
#--------------------------------------------------------
#### Test: Orthogonality
#--------------------------------------------------------
Tests.orthogonality(weighted_resolvent_modes)
Tests.orthogonality(weighted_forcing_modes)
#--------------------------------------------------------
#### Test: Invertibility
#--------------------------------------------------------
Tests.invertible(np.diag(singular_values))
#--------------------------------------------------------
#### Retrieve non-grid-weighted (physical) modes
#--------------------------------------------------------
weighted_resolvent_modes = np.asmatrix(weighted_resolvent_modes)
weighted_forcing_modes = np.asmatrix(weighted_forcing_modes)
resolvent_modes = np.linalg.solve(w, weighted_resolvent_modes)
forcing_modes = np.linalg.solve(w, weighted_forcing_modes)
#--------------------------------------------------------
#### Check that the continuity condition is satisfied
#--------------------------------------------------------
Tests.continuity(resolvent_modes, np.diag(singular_values), kx, kz, Nm, chebyshev_differentiation['D1'])
#--------------------------------------------------------
#### Fix phase of resolvent modes based on critical layer or centreline
#--------------------------------------------------------
phase_shift = np.zeros((resolvent_modes.shape[1], resolvent_modes.shape[1]), dtype=np.complex128)
ind0 = Nm/2 + 1 # Use centreline, unless
if c < 1.0:
inds = Tests.indices(mean_flow_derivatives['U'].diagonal(), lambda x: x > c)
if len(inds) > 0:
ind0 = inds[0]
np.fill_diagonal(phase_shift, np.exp(-1j * np.angle(resolvent_modes[ind0,:])))
resolvent_modes *= phase_shift
#--------------------------------------------------------
#### Project resolvent modes to get amplitude coefficients
#--------------------------------------------------------
# Initialize amplitude coefficients vector
ampl_coeffs = np.zeros((3*Nm, 1), dtype=np.complex128)
# Projection
ampl_coeffs = inv(np.diag(singular_values)) * resolvent_modes.H * w.H * w * np.asmatrix(original_ff_spectral[mx, :, mz]).T
Tests.projection(ampl_coeffs, np.diag(singular_values), resolvent_modes, np.asmatrix(original_ff_spectral[mx, :, mz]).T, 1e-10)
# phase_test = False
# norm_test = False
# xi_norm = np.linalg.norm(xi)
# if kz == 2.0 or kz == -2.0:
# #xi_norm >= 1e-10:
# # Phase test
# if phase_test:
# print("\nApplying phase shift at: " + str(kz) + "\n ")
# # shift the field by pi/3
# xi += 1.0j*(np.pi/3.0)
#
# # Norm test
# if norm_test:
# print("\nApplying norm doubling.")
# # Double the energy of the field
# xi *= np.sqrt(2.0) + 1.0j*np.sqrt(2.0)
#
# # Fix xi to see if same coefficients are retrieved from projection
# if fixXi:
# xi[0] = 1.0
# xi[1] = 0.0
# print("\nXI:")
# print("norm: " + str(xi_norm))
# print(xi)
# print("")
# print(xi)
#--------------------------------------------------------
#### Store resolvent modes, singular values and amplitude coeffs.
#--------------------------------------------------------
resolvent_modes_array[mx, mz, :, :] = resolvent_modes
forcing_modes_array[mx, mz, :, :] = forcing_modes
coefficients_array[mx, mz, :] = np.squeeze(np.asarray(ampl_coeffs))
sing_vals_array[mx, mz, :] = singular_values
calcTime = datetime.now() - startTime
print("\n\n\n")
print(calcTime)
print("\n\n\n")
deconstructed_dict = {}
deconstructed_dict['resolvent_modes'] = resolvent_modes_array
deconstructed_dict['forcing_modes'] = forcing_modes_array
deconstructed_dict['singular_values'] = sing_vals_array
deconstructed_dict['coefficients'] = coefficients_array
return deconstructed_dict
def tests_for_single_bpm(test_sys,
data_location,
rf_frequency,
settling_time=0.1):
root_path = '/'.join(
(data_location, test_sys.BPM.mac_address.replace(':', '-'),
time.strftime("%d-%m-%Y_T_%H-%M")))
if not os.path.exists(root_path):
os.makedirs(root_path)
subdirectory = ''.join((root_path, '/'))
data_out = {
'epics_id': test_sys.BPM.epics_id,
'rf_id': test_sys.rf_id,
'prog_atten_id': test_sys.prog_atten_id,
'mac_address': test_sys.BPM.mac_address,
'first_turn': test_sys.BPM.ft,
'agc': test_sys.BPM.agc,
'delta': test_sys.BPM.delta,
'switches': test_sys.BPM.switches,
'switch_val': test_sys.BPM.switch_val,
'attenuation': test_sys.BPM.attn,
'dsc': test_sys.BPM.dsc,
'kx': test_sys.BPM.kx,
'ky': test_sys.BPM.ky,
'bpm_spec': test_sys.BPM.spec
}
with open(subdirectory + "initial_BPM_state.json", 'w') as write_file:
json.dump(data_out, write_file)
Tests.adc_test(test_system_object=test_sys,
frequency=rf_frequency,
output_power_level=-4,
settling_time=settling_time,
sub_directory=subdirectory)
Tests.adc_int_atten_sweep_test(test_system_object=test_sys,
frequency=rf_frequency,
output_power_level=-4,
settling_time=settling_time,
sub_directory=subdirectory)
Tests.beam_power_dependence(test_system_object=test_sys,
frequency=rf_frequency,
output_power_levels=range(-4, -30, -5),
settling_time=settling_time,
samples=100,
sub_directory=subdirectory)
Tests.beam_position_equidistant_grid_raster_scan_test(
test_system_object=test_sys,
rf_frequency=rf_frequency,
output_power_level=-6,
x_points=3,
y_points=3,
settling_time=settling_time,
samples=100,
sub_directory=subdirectory)
print '\nData stored in ', subdirectory
return subdirectory
import Tests
if __name__ == '__main__':
print "WoWLootSimulator::Begin"
numberOfFreshGearingRuns = 10000
numberOfRaidWeeks = 40
lootSimulationTest = Tests.Tests(numberOfFreshGearingRuns,
numberOfRaidWeeks)
#lootSimulationTest.Test_Realistic()
lootSimulationTest.Test_Realistic_BalancedRoster()
#lootSimulationTest.Test_PerfectLootCouncil_BalancedRoster()
#lootSimulationTest.Test_NoPersonalLootItemTrading()
print "WoWLootSimulator::End"
import pyglet
from pyglet.gl import gl
import Tests
import os
import qatrack
import copy
# copies files from qa folder and puts it in our directory
os.system("del_copy.bat")
# get all our test names and get unique parent tests (i.e ML11 from ML11_e and ML11_p)
tests = Tests.tests()
unique_tests = list(set([t.split('_')[0] for t in tests.test_info.keys()]))
unique_tests.sort()
organized_tests = {}
for t in tests.test_info:
parent_test = t.split('_')[0]
if parent_test not in organized_tests:
organized_tests[parent_test] = [t]
else:
organized_tests[parent_test].append(t)
print organized_tests
background_color = (0.98, 0.98, 0.98, 1)
class Rectangle(object):
'''Draws a rectangle into a batch.'''
" State: " + str(self.state) + "\n" +
" Country: " + str(self.country) + "\n")
def delLastName(self):
# TODO this is broken because dict key
self.lastname = ''
# testing
if __name__ == '__main__':
# Book class
bookobj = Book('jfb_000')
# add first contact
Tests.testbook(bookobj=bookobj, firstname='Jesse', lastname='Bowman',
phonenumber='423.555.3443', emailaddress='*****@*****.**',
street='1506 12th Ave Unit 420', city='Seattle', state='WA',
country='USA')
# add second contact
Tests.testbook(bookobj=bookobj, firstname='Clandor', lastname='Dinkles', phonenumber='555.341.3443',
emailaddress='*****@*****.**', street='1414', city='Bristol', state='TN', country='USA')
# add third contact with shared values
Tests.testbook(bookobj=bookobj, firstname='Jesse\'s', lastname='GF', phonenumber='205.555.1123',
emailaddress='*****@*****.**', street='', city='Seattle', state='WA',
country='USA')
# add a fourth contact with different shared values (want to test searching by some matches and some not)
Tests.testbook(bookobj=bookobj, firstname='Jesse', lastname='Other', phonenumber='423.555.3443',
emailaddress='*****@*****.**', street='1506 12th Ave Unit 421', city='Seattle', state='WA',
country='USA')
import generadores as gn
import Tests as ts
import numpy.matlib as np
import random
gen = gn.ranGen()
testers = ts.tests()
nrosRandomLFG = gen.randLFG(6,7,100)
nrosRandomGLC = gen.randGCL(15,100)
nrosRandomPy = []
for i in range(100):
nrosRandomPy.append(random.random())
#testers.testCorridas(nrosRandom)
print('------------------------------------------------------------------------------')
print('| Generadores \ Test | Chi Cuadrado | Kolmogorov-Smirnov | Corridas | Series |')
print('|--------------------|--------------|--------------------|----------|--------|')
print('| GLC | '+testers.chiSqTest(nrosRandomGLC)+' | '+testers.testKS(nrosRandomGLC)+' | '+testers.testCorridas(nrosRandomGLC)+' | '+testers.series(nrosRandomGLC)+'|')
print('|--------------------|--------------|--------------------|----------|--------|')
print('| LFG | '+testers.chiSqTest(nrosRandomLFG)+' | '+testers.testKS(nrosRandomLFG)+' | '+testers.testCorridas(nrosRandomLFG)+' | '+testers.series(nrosRandomLFG)+'|')
print('|--------------------|--------------|--------------------|----------|--------|')
print('| randrange | '+testers.chiSqTest(nrosRandomPy)+' | '+testers.testKS(nrosRandomPy)+' | '+testers.testCorridas(nrosRandomPy)+' | '+testers.series(nrosRandomPy)+'|')
print('------------------------------------------------------------------------------')
#for i in nrosRandom:
# print(i)
def OnTest(self, event):
import Tests
Tests.test_wxFrame(self)
def debug(self):
r = jsonpickle.encode(Tests.test_puntuacion(), unpicklable=False)
return json.loads(r)
def main(File, Details, MeanProfile, Sparse):
#================================================================
#### Format the output directory
#================================================================
if File[-3:] == ".h5":
# print("HDF5 file given.")
#------------------------------------------------------------
#### Read the HDF5 and details file
#------------------------------------------------------------
file_info, original_attrs = ut.read_H5(File)
details = ut.read_Details(Details)
elif File[-3:] == ".ff":
# print("Channelflow binary file given.")
#------------------------------------------------------------
#### Convert from .ff to .h5
#------------------------------------------------------------
command = "fieldconvert " + File + " " + File[:-3] + ".h5"
#------------------------------------------------------------
#### Read the HDF5 and details file
#------------------------------------------------------------
file_info = ut.read_H5(File)
details = ut.read_Details(Details)
else: # No file type given.
ut.error("Invalid file given.")
field_u = file_info['ff'][0,:,:,:]
field_v = file_info['ff'][1,:,:,:]
field_w = file_info['ff'][2,:,:,:]
#================================================================
#### Initialise flow field object for field (to approximate)
#================================================================
ff_original = ffClass.FlowFieldChannelFlow( file_info['Nd'],
file_info['Nx'],
file_info['Ny'],
file_info['Nz'],
file_info['Lx'],
file_info['Lz'],
file_info['alpha'],
file_info['beta'],
details['c'],
details['bf'],
details['Re'],
file_info['ff'],
"pp")
Tests.fft_ifft(ff_original)
#================================================================
#### Check velocity profile
#================================================================
# Create empty 4D array to store mean flow field
mean = np.zeros((file_info['Nd'], file_info['Nx'], file_info['Ny'], file_info['Nz']))
mean_profile = []
if MeanProfile: # Velocity profile given
#------------------------------------------------------------
#### Read velocity profile
#------------------------------------------------------------
vel_profile = ut.read_Vel_Profile(MeanProfile)
# Check to see if it is a mean profile or a deviation profile.
deviation = any(n < 0 for n in vel_profile)
if deviation: # Deviation profile given
# Add baseflow to deviation
baseflow = []
if details['bf'] == "lam": # Laminary base flow
baseflow = 1.0 - ff_original.y**2.0
elif details['bf'] == "cou": # Couette base flow
baseflow = ff_original.y
# Add baseflow to deviation to get turbulent mean profile
mean_profile = vel_profile + np.asarray(baseflow)
else: # Turbulent mean profile given
mean_profile = vel_profile
#================================================================
#### ---- Remove the wall boundaries
#================================================================
# Removing the xz-planes at y=1 and y=-1,
# so that the chebyshev nodes can be used to construct
# the transfer function.
ff_original.remove_wall_boundaries()
#================================================================
#### ---- Fourier transform in xz directions
#================================================================
ff_original.make_xz_spectral()
#================================================================
#### ---- Stack velocity fields in the wall-normal direction
#================================================================
ff_original.stack_ff_in_y()
#================================================================
#### Create arrays of Fourier modes to use
#================================================================
# Modes multiplied with fundamental wavenumbers
#(Modes: the physical modes, i.e. the grid points)
kx_array = ff_original.Mx * ff_original.alpha
kz_array = ff_original.Mz * ff_original.beta
#================================================================
#### Deconstruct original flow field
#================================================================
deconstructed_field = cr.deconstruct_field(ff_original.velocityField,
kx_array,
kz_array,
ff_original.numModes,
ff_original.y,
ff_original.c,
ff_original.Re,
ff_original.baseflow,
mean_profile,
Sparse)
#================================================================
#### Write decomposed flow field to disk as an HDF5 file
#================================================================
ut.write_H5_Deconstructed(deconstructed_field, original_attrs, ff_original, File[:-3])
time.sleep(2)
TCP_IP = '10.42.0.10'
TCP_PORT = 5000
BUFFER_SIZE = 1024
s = socket.socket(socket.AF_INET,socket.SOCK_STREAM)
s.connect((TCP_IP,TCP_PORT))
s.close()
s = socket.socket(socket.AF_INET,socket.SOCK_STREAM)
s.connect((TCP_IP,TCP_PORT))
passed = Tests.test0(s)
print ('0: ' + str(passed))
if (passed == False):
exit()
print ('1: ' + str(Tests.test1(s)))
print ('2: ' + str(Tests.test2(s)))
print ('3: ' + str(Tests.test3(s)))
print ('4: ' + str(Tests.test4(s)))
print ('5: ' + str(Tests.test5(s)))
print ('6: ' + str(Tests.test6(s)))
def main(repo,
repourl,
build,
branch,
buildtype,
url=None,
profile="minimal",
readonlymode=""):
# We need to iterate through the options in the map and find the right host based on
# whether the repo name matches any of the options, as they may not be exactly identical
if config.has_section(buildtype):
for option in config.options(buildtype):
line = config.get(buildtype, option)
line = line.split(',')
for entry in line:
if option.strip() in repo:
env.host = entry.strip()
print "===> Host is %s" % env.host
break
# Didn't find any host in the map for this project.
if env.host is None:
raise ValueError(
"===> You wanted to deploy a build but we couldn't find a host in the map file for repo %s so we're aborting."
% repo)
user = "******"
# Set our host_string based on user@host
env.host_string = '%s@%s' % (user, env.host)
# Set SSH key if needed
ssh_key = None
if "*****@*****.**" in repourl:
ssh_key = "/var/lib/jenkins/.ssh/id_rsa_github"
# Set a URL if one wasn't already provided
if url is None:
url = "%s.%s.%s" % (repo, branch, env.host)
# Run the tasks.
# --------------
# If this is the first build, attempt to install the site for the first time.
with settings(warn_only=True):
if run('drush sa | grep \'^@\?%s_%s$\' > /dev/null' %
(repo, branch)).failed:
fresh_install = True
else:
fresh_install = False
if fresh_install == True:
print "===> Looks like the site %s doesn't exist. We'll try and install it..." % url
try:
common.Utils.clone_repo(repo, repourl, branch, build, None,
ssh_key)
InitialBuild.initial_build(repo, url, branch, build, profile)
AdjustConfiguration.adjust_drushrc_php(repo, branch, build)
common.Services.clear_php_cache()
common.Services.clear_varnish_cache()
common.Services.reload_webserver()
InitialBuild.generate_drush_alias(repo, url, branch)
Drupal.generate_drush_cron(repo, branch)
except:
e = sys.exc_info()[1]
raise SystemError(e)
else:
print "===> Looks like the site %s exists already. We'll try and launch a new build..." % url
# Grab some information about the current build
previous_build = common.Utils.get_previous_build(
repo, cleanbranch, build)
previous_db = common.Utils.get_previous_db(repo, cleanbranch, build)
Drupal.backup_db(repo, branch, build)
common.Utils.clone_repo(repo, repourl, branch, build, None, ssh_key)
Updates.merge_prod(repo, branch, build)
AdjustConfiguration.adjust_settings_php(repo, branch, build,
previous_build, buildtype)
AdjustConfiguration.adjust_drushrc_php(repo, branch, build)
AdjustConfiguration.adjust_files_symlink(repo, branch, build)
Drupal.drush_status(repo, branch, build)
Drupal.go_offline(repo, branch, build, readonlymode)
# No need for this, drush_up does it later
# drush_updatedb(repo, branch, build) # This will revert the database if it fails
common.Utils.adjust_live_symlink(
repo, branch, build) # This will revert the database if it fails
Updates.drush_up(repo, branch)
Drupal.drush_status(
repo, branch, build, revert=True
) # This will revert the database if it fails (maybe hook_updates broke ability to bootstrap)
Updates.add_push_updates(repo, branch, build)
Drupal.go_online(
repo, branch, build, previous_build, readonlymode
) # This will revert the database and switch the symlink back if it fails
common.Services.clear_php_cache()
common.Services.clear_varnish_cache()
Drupal.generate_drush_cron(repo, branch)
Tests.run_tests(repo, branch, build)
#run_behat_tests(repo, branch, build)
#commit_new_db(repo, repourl, url, build, branch)
common.Utils.remove_old_builds(repo, branch)
Updates.send_update_notification(repo, branch)
script_dir = os.path.dirname(os.path.realpath(__file__))
if put(script_dir + '/../util/revert', '/home/jenkins',
mode=0755).failed:
print "####### BUILD COMPLETE. Could not copy the revert script to the application server, revert will need to be handled manually"
else:
print "####### BUILD COMPLETE. If you need to revert this build, run the following command: sudo /home/jenkins/revert -b %s -d %s -s /var/www/live.%s.%s -a %s_%s" % (
previous_build, previous_db, repo, branch, repo, branch)