def massDensity(numDeps, temp, press, mmw, zScale):
"""Solves the equation of state (EOS) for the mass density (rho) given total
* pressure from HSE solution, for a mixture of ideal gas particles and photons
*
* Need to assume a mean molecular weight structure, mu(Tau)
"""
logE = math.log10(math.e) #// for debug output
#//press is a 4 x numDeps array:
#// rows 0 & 1 are linear and log *gas* pressure, respectively
#// rows 2 & 3 are linear and log *radiation* pressure
#// double c = 9.9989E+10; // light speed in vaccuum in cm/s
#// double sigma = 5.670373E-5; //Stefan-Boltzmann constant ergs/s/cm^2/K^4
#//Row 0 of mmwNe is Mean molecular weight in amu
k = Useful.k()
logK = Useful.logK()
amu = Useful.amu()
logAmu = Useful.logAmu()
#double logMuAmu
#//System.out.println("STATE: logK " + logK + " logMuAmu " + logMuAmu);
rho = [[0.0 for i in range(numDeps)] for j in range(2)]
#// Declare scatch variables:
#// double logPrad, pRad, pGas, logPgas;
for i in range(numDeps):
logMuAmu = math.log(mmw[i]) + logAmu
#// Compute LTE bolometric radiation contribution to total HSE pressure
#//logPrad = radFac + 4.0*temp[1][i] ;
#//pRad = Math.exp(logPrad);
#//pGas = press[0][i] - pRad;
#//logPgas = Math.log(pGas);
rho[1][i] = press[1][i] - temp[1][i] + (logMuAmu - logK)
rho[0][i] = math.exp(rho[1][i])
#//System.out.println("i " + i + " press[1] " + logE * press[1][i] + " mmw[i] " + mmw[i] + " rho " + logE * rho[1][i]);
#//System.out.println("temp " + temp[0][i] + " rho " + rho[0][i]);
return rho
def massDensity2(numDeps, nelemAbnd, logNz, cname):
rho = [[0.0 for i in range(numDeps)] for j in range(2)]
#double logAddend, addend;
lAmu = Useful.logAmu()
#//Prepare log atomic masses once for each element:
logAMass = [0.0 for i in range(nelemAbnd)]
for j in range(nelemAbnd):
logAMass[j] = math.log(AtomicMass.getMass(cname[j]))
#//System.out.println("j " + j + " logAMass " + logAMass[j]);
for i in range(numDeps):
rho[0][i] = 0.0
for j in range(nelemAbnd):
logAddend = logNz[j][i] + lAmu + logAMass[j]
rho[0][i] = rho[0][i] + math.exp(logAddend)
rho[1][i] = math.log(rho[0][i])
return rho
def convec(numDeps, tauRos, depths, temp, press, rho, kappa, kappaSun, zScale,
teff, logg, mmw):
logE = math.log10(math.E) #// for debug output
ln10 = math.log(10.0) #//needed to convert logg from base 10 to base e
convTemp = [[0.0 for i in range(numDeps)] for j in range(2)]
#//Schwarzschild criterion for convective instability:
gamma = 5.0 / 3.0 #//adiabatic gamma for ideal monatomic gas - the photon gas is negligible in stars w convection
gammaFac = gamma / (
gamma - 1.0
) #// yeah, yeah - I know it's 2.5, but let's show where it comes from for the record...
invGamFac = 1.0 / gammaFac
#//CHEAT: Set gammaThing to value that makes convection just disappear at bottom of mid-F star (7000 K)
#//double gammaThing = 1.60;
#//double invGamThing = 1.0 / gammaThing;
#double invGamThing;
#//System.out.println("gammaThing " + gammaThing);
#double deltaP, deltaT; //, dlnPdlnT;
#double dlnTdlnP, dlnMudlnP, deltaMu;
#double Hp, logHp;
#//double HpSun = 1.2535465715411615E7; //cm, as computed by GrayStar at depth index=36
HpSun = 2.0e7 #//cm, approximately as computed by GrayStar at depth index=36
logHpSun = math.log(HpSun)
#//Compute the presure scale height as a reality check:
HpRefDep = 36 #//index of reference depth for computing pressure scale height
logHp = press[1][HpRefDep] - rho[1][HpRefDep] - ln10 * logg
Hp = math.exp(logHp)
#//Try scaling gamma to "fix" the convective boundary
#//invGamThing = invGamFac * HpSun/Hp;
#//System.out.println("Hp/HpSun " + Hp/HpSun);
#//double[] mmw = State.mmwFn(numDeps, temp, zScale);
#//Search outward for top of convection zone
isStable = False
iBound = numDeps - 1 #//initialize index of depth where convection begins to bottom of atmosphere
for i in range(numDeps - 2, 0, -1):
#//System.out.println("Hp " + Hp);
#//1st order finite difference - erratic?
#//double deltaP = press[1][i] - press[1][i-1];
#//double deltaT = temp[1][i] - temp[1][i-1];
#//Try "2nd order" finite difference - non-uniform spacing in deltaT
deltaP = press[1][i + 1] - press[1][i - 1]
deltaT = temp[1][i + 1] - temp[1][i - 1]
deltaMu = (mmw[i + 1] - mmw[i]) * Useful.amu
#//dlnPdlnT = deltaP / deltaT;
dlnTdlnP = deltaT / deltaP
dlnMudlnP = deltaMu / deltaP
#//System.out.format("%12.8f %12.8f%n", logE * tauRos[1][i], dlnPlndT);
#// This can be finicky - let's say we have not found the radiative zone unless two consecutive layers meet the criterion
#//if (dlnPdlnT > gammaThing) {
if (dlnTdlnP < invGamFac + dlnMudlnP):
#//Convectively stable
if (isStable == False):
#//The previous convectively unstable layer was an isolated anomoly - we're have NOT found the zone! Reset:
isStable = true
iBound = i
#//System.out.println("First stable layer was found, tauRos " + logE * tauRos[1][i] + " NOW: isStable " + isStable);
#}
#}
#}
#//System.out.println("Convec: iBound " + iBound);
#//Radiative zone - leave temperatures alone:
for i in range(iBound):
convTemp[0][i] = temp[0][i]
convTemp[1][i] = temp[1][i]
baseTemp = temp[0][iBound]
baseLogTemp = temp[1][iBound]
baseTau = tauRos[0][iBound]
baseLogTau = tauRos[1][iBound]
#//double baseDepth = depths[iBound]
logSigma = Useful.logSigma()
logK = Useful.logK()
logAmu = Useful.logAmu()
mixLSun = 1.0 #// convective mixing length in pressure scale heights (H_P)
betaSun = 0.5 #// factor for square of convective bubble velocity (range: 0.0 - 1.0)
#double Cp, logCp; //Specific heat capacity at constant pressure
mixL = mixLSun #//initialization
beta = betaSun #//initialization
teffSun = 5778.0
loggSun = 4.44
#//Shameless fix:
#//It seems mixL and beta need to be temp and press dependent:
if (teff < teffSun):
mixL = mixLSun * math.pow(
teff / teffSun,
4.0) #//lower teff -> smaller mixL -> steeper SAdGrad
beta = betaSun * math.pow(
teff / teffSun,
4.0) #//lower teff -> smaller beta -> steeper SAdGrad
mixL = mixL * math.pow(
loggSun / logg, 2.0) #// lower logg -> larger mixL -> smaller sAdGrad
beta = beta * math.pow(
loggSun / logg, 2.0) #// lower logg -> larger beta -> smaller sAdGrad
"""/*
//Shameless fix:
beta = betaSun; // no fix?
mixL = mixLSun * Math.pow(Hp / HpSun, 4.0); //lower teff -> smaller Hp -> smaller mixL -> steeper SAdGrad
//mixL = mixL * Math.pow(logg / loggSun, 4.0); // lower logg -> smaller mixL -> larger sAdGrad
*/"""
logMixL = math.log(mixL)
logBeta = math.log(beta)
logFluxSurfBol = logSigma + 4.0 * math.log(teff)
#// This will get hairy when we take it super-adiabatic so let's take it *really* easy and make every factor and term clear:
logInvGamFac = math.log(invGamFac)
#//Get the mean molecular weight in amu from State - Row 0 is "mu" in amu:
#double mu, logMu, logFctr1, logFctr2, logFctr3;
#double nextTemp, lastTemp, nextTemp2;
#//Adiabatic dT/dx gradients in various coordinates
#//tau, logTau space
#double logAdGradTauMag, logAdGradLogTauMag, adGradLogTau;
#//SuperAdiabatic dT/dx gradients in various coordinates
#double deltaTau, logDeltaTau, deltaLogTau, logDeltaLogTau;
#double sAdGradLogTau, logSadGradR, logSadGradTau, logSadGradLogTau;
#double lastLogTau;
#//r space:
#double logAdGradRMag, adGradR;
#//SuperAdiabatic dT/dx gradients in various coordinates
#double deltaR, logDeltaR;
#/*
# double sAdGradR;
# double lastDepth;
# */
lastTemp = baseTemp
lastLogTau = baseLogTau
#//lastDepth = baseDepth;
#//System.out.println(
#// "tauRos[1][i] (tauRos[1][i]-lastLogTau) adGradLogTau rho[1][i] kappa[1][i] lastTemp nextTemp");
for i in range(iBound, numDeps):
mu = mmw[i]
logMu = math.log(mu)
logFctr1 = logMu + logAmu - logK
#//System.out.println("logFactr1 " + logE*logFctr1 + " logInvGamFac " + logE*logInvGamFac + " logg " + logg);
logCp = math.log(
5.0 / 2.0
) - logFctr1 #//ideal monatomic gas - underestimate that neglects partial ionization
#// ** Caution: These are log_e of the *magnitude* of the temperature gradients!
#//The adiabatic dT/dTau in r space
logAdGradRMag = logInvGamFac + logFctr1 + ln10 * logg #//logg is in base 10
#//This is baaad stuff - remember our tuaRos scale has *nothing* to do with our kappa values!
#//The adiabatic dT/dTau in tau space - divide dT/dr by rho and kappa and make it +ve becasue we're in tau-space:
#//Bad fake to fix artificially small dT/dr at low Teff - use kappaSun instead of kappa
logAdGradTauMag = logAdGradRMag - rho[1][i] - kappa[1][i]
#//The adiabatic dT/dLnTau in log_e(tau) space
logAdGradLogTauMag = tauRos[1][i] + logAdGradTauMag
#//Build the T(tau) in the convection zone:
#// Work in logTau space - numerically safer??
adGradLogTau = math.exp(
logAdGradLogTauMag) #//No minus sign - logTau increases inward...
nextTemp = lastTemp + adGradLogTau * (tauRos[1][i] - lastLogTau)
#//System.out.format("%12.8f %12.8f %12.8f %12.8f %12.8f %7.1f %7.1f%n", logE * tauRos[1][i], logE * (tauRos[1][i] - lastLogTau), adGradLogTau, logE * rho[1][i], logE * kappa[1][i], lastTemp, nextTemp);
"""/*
// Do in geometric depth space
adGradR = Math.exp(logAdGradRMag); // no minus sign - our depths *increase* inwards (they're NOT heights!)
nextTemp = lastTemp + adGradR * (depths[i] - lastDepth);
//System.out.format("%12.8f %12.8f %12.8f %7.1f %7.1f%n", logE*tauRos[1][i], (depths[i] - lastDepth), adGradR, lastTemp, nextTemp);
*/"""
#//Okay - now the difference between the superadiabatic and adiabatic dT/dr:
logFctr2 = rho[1][i] + logCp + 2.0 * logMixL
#// ** NOTE ** Should temp in the following line be the *convective* temp of the last depth???
#// logg is in base 10 - convert to base e
logFctr3 = 3.0 * (ln10 * logg - math.log(lastTemp)) / 2.0
#//Difference between SuperAdibatic dT/dr and Adiabtic dT/dr in r-space - Carroll & Ostlie 2nd Ed. p. 328
#//System.out.println("logFluxSurfBol " + logE * logFluxSurfBol + " logFctr2 " + logE * logFctr2 + " logFctr1 " + logE * logFctr1 + " logFctr3 " + logE * logFctr3 + " logBeta " + logE * logBeta);
logDeltaR = logFluxSurfBol - logFctr2 + 2.0 * logFctr1 + logFctr3 - 0.5 * logBeta
logDeltaR = 2.0 * logDeltaR / 3.0 #//DeltaR is above formula to the 2/3 power
#//This is baaad stuff - remember our tuaRos scale has *nothing* to do with our kappa values!
#//Bad fake to fix artificially small dT/dr at low Teff - use kappaSun instead of kappa
logDeltaTau = logDeltaR - rho[1][i] - kappa[1][i]
logDeltaLogTau = tauRos[1][i] + logDeltaTau
sAdGradLogTau = adGradLogTau + math.exp(logDeltaLogTau)
#//System.out.format("%12.8f %12.8f %12.8f %12.8f%n", logE*tauRos[1][i], logE*logDeltaR, logE*logDeltaTau, logE*logDeltaLogTau);
nextTemp2 = lastTemp + sAdGradLogTau * (tauRos[1][i] - lastLogTau)
"""/*
// Do in geometric depth space
sAdGradR = adGradR + Math.exp(logDeltaR);
nextTemp2 = lastTemp + sAdGradR * (depths[i] - lastDepth);
*/"""
#// set everything to nextTemp2 for superadibatic dT/dr, and to nexTemp for adiabatic dT/dr
convTemp[0][i] = nextTemp2
convTemp[1][i] = math.log(nextTemp2)
lastTemp = nextTemp2
lastLogTau = tauRos[1][i]
#//lastDepth = depths[i]
#}
return convTemp
